Guide to the Human Genome
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Name: PLAGL1 Sequence: fasta or formatted (463aa) NCBI GI: 27894293
Description:

pleiomorphic adenoma gene-like 1 isoform 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [463aa] pleiomorphic adenoma gene-like 1 isoform 2
alt mRNA [463aa] pleiomorphic adenoma gene-like 1 isoform 2
alt mRNA [463aa] pleiomorphic adenoma gene-like 1 isoform 2
alt mRNA [463aa] pleiomorphic adenoma gene-like 1 isoform 2
alt prot [411aa] pleiomorphic adenoma gene-like 1 isoform 1
alt prot [411aa] pleiomorphic adenoma gene-like 1 isoform 1
alt prot [411aa] pleiomorphic adenoma gene-like 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         35           3
 C cysteine            3.9         18           1
 D aspartate           3.2         15           1
 E glutamate           4.5         21           2
 F phenylalanine       4.5         21           1
 G glycine             6.0         28           1
 H histidine           6.3         29           2
 I isoleucine          1.3          6           1
 K lysine              6.9         32           2
 L leucine            12.7         59           2
 M methionine          1.7          8           1
 N asparagine          3.2         15           1
 P proline             9.9         46           4
 Q glutamine           5.4         25           4
 R arginine            3.2         15           2
 S serine              8.2         38           2
 T threonine           6.5         30           2
 V valine              2.8         13           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                1.000   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                1.000   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                1.000   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                1.000   pleiomorphic adenoma gene-like 1 isoform 2 
PLAGL1                0.881   pleiomorphic adenoma gene-like 1 isoform 1 
PLAGL1                0.881   pleiomorphic adenoma gene-like 1 isoform 1 
PLAGL1                0.881   pleiomorphic adenoma gene-like 1 isoform 1 
PLAG1                 0.369   pleiomorphic adenoma gene 1 isoform a 
PLAG1                 0.369   pleiomorphic adenoma gene 1 isoform a 
PLAGL2                0.350   pleiomorphic adenoma gene-like 2 
PLAG1                 0.288   pleiomorphic adenoma gene 1 isoform b 
ZFP62                 0.118   zinc finger protein 62 homolog 
LOC100287429          0.118   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.118   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.118   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.118   zinc finger protein 84 
ZNF84                 0.118   zinc finger protein 84 
ZNF333                0.118   zinc finger protein 333 
ZBTB24                0.117   zinc finger and BTB domain containing 24 
ZNF543                0.116   zinc finger protein 543 
ZNF93                 0.115   zinc finger protein 93 
ZBTB17                0.115   zinc finger and BTB domain containing 17 
ZNF430                0.115   zinc finger protein 430 
ZNF805                0.114   zinc finger protein 805 isoform 2 
ZNF805                0.114   zinc finger protein 805 isoform 1 
ZNF98                 0.114   zinc finger protein 98 
ZNF264                0.114   zinc finger protein 264 
ZNF582                0.114   zinc finger protein 582 
LOC388559             0.113   PREDICTED: similar to hCG1778601 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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