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Search of human proteins with 58331185
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58331185 chaperonin containing TCP1, subunit 7 isoform b
[Homo sapiens]
(339 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58331185 chaperonin containing TCP1, subunit 7 isoform b [Hom... 681 0.0
gi|5453607 chaperonin containing TCP1, subunit 7 isoform a [Homo... 677 0.0
gi|57863259 T-complex protein 1 isoform b [Homo sapiens] 173 2e-43
gi|57863257 T-complex protein 1 isoform a [Homo sapiens] 173 2e-43
gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Hom... 163 2e-40
gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Hom... 163 2e-40
gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Hom... 163 2e-40
gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens] 160 2e-39
gi|38455427 chaperonin containing TCP1, subunit 4 (delta) [Homo ... 150 1e-36
gi|58331171 chaperonin containing TCP1, subunit 6A isoform b [Ho... 133 3e-31
gi|4502643 chaperonin containing TCP1, subunit 6A isoform a [Hom... 133 3e-31
gi|58331173 chaperonin containing TCP1, subunit 6B [Homo sapiens] 132 6e-31
gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Hom... 131 8e-31
gi|48762932 chaperonin containing TCP1, subunit 8 (theta) [Homo ... 119 4e-27
gi|7657253 T-complex protein 1 [Homo sapiens] 77 3e-14
gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III ... 40 0.002
gi|41399285 chaperonin [Homo sapiens] 37 0.019
gi|31542947 chaperonin [Homo sapiens] 37 0.019
gi|9055272 McKusick-Kaufman syndrome protein [Homo sapiens] 33 0.48
gi|25914754 McKusick-Kaufman syndrome protein [Homo sapiens] 33 0.48
gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo s... 31 1.8
gi|5031923 meiotic recombination 11 homolog A isoform 1 [Homo sa... 31 1.8
gi|226437568 apoptosis-inducing factor, mitochondrion-associated... 30 3.1
gi|65787454 apoptosis-inducing factor, mitochondrion-associated,... 30 3.1
gi|21389617 apoptosis-inducing factor, mitochondrion-associated,... 30 3.1
gi|115527120 nebulin [Homo sapiens] 30 4.0
gi|187608809 hypothetical protein LOC23240 isoform 2 [Homo sapiens] 30 4.0
gi|196114949 hypothetical protein LOC23240 isoform 1 [Homo sapiens] 30 4.0
gi|169160654 PREDICTED: similar to small nuclear ribonucleoprote... 29 6.9
gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa ... 29 6.9
>gi|58331185 chaperonin containing TCP1, subunit 7 isoform b [Homo
sapiens]
Length = 339
Score = 681 bits (1756), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MMDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQ 60
MMDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQ
Sbjct: 1 MMDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQ 60
Query: 61 AIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMM 120
AIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMM
Sbjct: 61 AIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMM 120
Query: 121 ACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEE 180
ACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEE
Sbjct: 121 ACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEE 180
Query: 181 TERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEI 240
TERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEI
Sbjct: 181 TERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEI 240
Query: 241 IPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALT 300
IPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALT
Sbjct: 241 IPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALT 300
Query: 301 AASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRPH 339
AASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRPH
Sbjct: 301 AASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRPH 339
>gi|5453607 chaperonin containing TCP1, subunit 7 isoform a [Homo
sapiens]
Length = 543
Score = 677 bits (1746), Expect = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 62
DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI
Sbjct: 207 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 266
Query: 63 VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 122
VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC
Sbjct: 267 VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 326
Query: 123 GGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETE 182
GGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETE
Sbjct: 327 GGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETE 386
Query: 183 RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIP 242
RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIP
Sbjct: 387 RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIP 446
Query: 243 RQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAA 302
RQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAA
Sbjct: 447 RQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAA 506
Query: 303 SEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRPH 339
SEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRPH
Sbjct: 507 SEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGRPH 543
>gi|57863259 T-complex protein 1 isoform b [Homo sapiens]
Length = 401
Score = 173 bits (438), Expect = 2e-43
Identities = 109/338 (32%), Positives = 182/338 (53%), Gaps = 18/338 (5%)
Query: 2 MDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQA 61
M+S L++G A G + PK+ N KIA L+ L+ K ++ + E
Sbjct: 51 MESMLISGYALN---CVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQ 107
Query: 62 IVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMA 121
I E +I ++++KI +GA V+L+ I D+ +YF + RV + DLKR A
Sbjct: 108 IRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 167
Query: 122 CGGSIQTSVNALSAD------VLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAE 175
G +I +++ L + +LG+ + + +I + + + ILRG +
Sbjct: 168 SGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGAND 227
Query: 176 QFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYA 235
+E ERSLHDA+ +V+R +++ SVV GGGA+E LS YL +Y+ ++ ++QL I +A
Sbjct: 228 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFA 287
Query: 236 KALEIIPRQLCDNAGFDATNILNKLRARHAQGGT--------WYGVDINNEDIADNFEAF 287
++L +IP L NA D+T+++ KLRA H + W G+D++N DN +A
Sbjct: 288 RSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAG 347
Query: 288 VWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 324
V+EP +V++ +L A+EAA I+ +D+ IK +P S D
Sbjct: 348 VFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 385
>gi|57863257 T-complex protein 1 isoform a [Homo sapiens]
Length = 556
Score = 173 bits (438), Expect = 2e-43
Identities = 109/338 (32%), Positives = 182/338 (53%), Gaps = 18/338 (5%)
Query: 2 MDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQA 61
M+S L++G A G + PK+ N KIA L+ L+ K ++ + E
Sbjct: 206 MESMLISGYALN---CVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQ 262
Query: 62 IVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMA 121
I E +I ++++KI +GA V+L+ I D+ +YF + RV + DLKR A
Sbjct: 263 IRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 322
Query: 122 CGGSIQTSVNALSAD------VLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAE 175
G +I +++ L + +LG+ + + +I + + + ILRG +
Sbjct: 323 SGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKARTSASIILRGAND 382
Query: 176 QFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYA 235
+E ERSLHDA+ +V+R +++ SVV GGGA+E LS YL +Y+ ++ ++QL I +A
Sbjct: 383 FMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFA 442
Query: 236 KALEIIPRQLCDNAGFDATNILNKLRARHAQGGT--------WYGVDINNEDIADNFEAF 287
++L +IP L NA D+T+++ KLRA H + W G+D++N DN +A
Sbjct: 443 RSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLSNGKPRDNKQAG 502
Query: 288 VWEPAMVRINALTAASEAACLIVSVDETIK-NPRSTVD 324
V+EP +V++ +L A+EAA I+ +D+ IK +P S D
Sbjct: 503 VFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDD 540
>gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Homo
sapiens]
Length = 544
Score = 163 bits (413), Expect = 2e-40
Identities = 104/338 (30%), Positives = 162/338 (47%), Gaps = 7/338 (2%)
Query: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 62
DS ++ GV K ++ K NP+I LL+ LE K + +I + ED+ I
Sbjct: 210 DSCVLRGVMINKDVTHPRMRRYIK---NPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 266
Query: 63 VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 122
+ E + E I VV+++ I D+A Y ++ RV + D R AC
Sbjct: 267 LQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARAC 326
Query: 123 GGSIQTSVNALSADVLGR-CQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEET 181
G I + L D +G + E +IG E + F T C K CT +LRG +++ + E
Sbjct: 327 GARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEV 386
Query: 182 ERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEII 241
ER+L DA+ + R + + +V GGGA EM ++ L + S+ + G +Q A A+ALE+I
Sbjct: 387 ERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVI 446
Query: 242 PRQLCDNAGFDATNILNKLRARHAQGG--TWYGVDINNEDIADNFEAFVWEPAMVRINAL 299
PR L N G +L LRA+H Q TW GV+ + D E +WEP V++
Sbjct: 447 PRTLIQNCGASTIRLLTSLRAKHTQENCETW-GVNGETGTLVDMKELGIWEPLAVKLQTY 505
Query: 300 TAASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGR 337
A E A L++ +D+ + + D + G G+
Sbjct: 506 KTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 543
>gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Homo
sapiens]
Length = 507
Score = 163 bits (413), Expect = 2e-40
Identities = 104/338 (30%), Positives = 162/338 (47%), Gaps = 7/338 (2%)
Query: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 62
DS ++ GV K ++ K NP+I LL+ LE K + +I + ED+ I
Sbjct: 173 DSCVLRGVMINKDVTHPRMRRYIK---NPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 229
Query: 63 VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 122
+ E + E I VV+++ I D+A Y ++ RV + D R AC
Sbjct: 230 LQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARAC 289
Query: 123 GGSIQTSVNALSADVLGR-CQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEET 181
G I + L D +G + E +IG E + F T C K CT +LRG +++ + E
Sbjct: 290 GARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEV 349
Query: 182 ERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEII 241
ER+L DA+ + R + + +V GGGA EM ++ L + S+ + G +Q A A+ALE+I
Sbjct: 350 ERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVI 409
Query: 242 PRQLCDNAGFDATNILNKLRARHAQGG--TWYGVDINNEDIADNFEAFVWEPAMVRINAL 299
PR L N G +L LRA+H Q TW GV+ + D E +WEP V++
Sbjct: 410 PRTLIQNCGASTIRLLTSLRAKHTQENCETW-GVNGETGTLVDMKELGIWEPLAVKLQTY 468
Query: 300 TAASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGR 337
A E A L++ +D+ + + D + G G+
Sbjct: 469 KTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 506
>gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Homo
sapiens]
Length = 545
Score = 163 bits (413), Expect = 2e-40
Identities = 104/338 (30%), Positives = 162/338 (47%), Gaps = 7/338 (2%)
Query: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 62
DS ++ GV K ++ K NP+I LL+ LE K + +I + ED+ I
Sbjct: 211 DSCVLRGVMINKDVTHPRMRRYIK---NPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 267
Query: 63 VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 122
+ E + E I VV+++ I D+A Y ++ RV + D R AC
Sbjct: 268 LQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARAC 327
Query: 123 GGSIQTSVNALSADVLGR-CQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEET 181
G I + L D +G + E +IG E + F T C K CT +LRG +++ + E
Sbjct: 328 GARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEV 387
Query: 182 ERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEII 241
ER+L DA+ + R + + +V GGGA EM ++ L + S+ + G +Q A A+ALE+I
Sbjct: 388 ERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVI 447
Query: 242 PRQLCDNAGFDATNILNKLRARHAQGG--TWYGVDINNEDIADNFEAFVWEPAMVRINAL 299
PR L N G +L LRA+H Q TW GV+ + D E +WEP V++
Sbjct: 448 PRTLIQNCGASTIRLLTSLRAKHTQENCETW-GVNGETGTLVDMKELGIWEPLAVKLQTY 506
Query: 300 TAASEAACLIVSVDETIKNPRSTVDAPTAAGRGRGRGR 337
A E A L++ +D+ + + D + G G+
Sbjct: 507 KTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544
>gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens]
Length = 535
Score = 160 bits (405), Expect = 2e-39
Identities = 93/302 (30%), Positives = 159/302 (52%), Gaps = 2/302 (0%)
Query: 24 QPKKYHNPKIALLNVELEL-KAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGA 82
QPK+ N KI + N ++ K + + +RV + I AE + +K+E+I G
Sbjct: 228 QPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGI 287
Query: 83 KVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQ 142
+++ I + Q F + ++R + GG I ++ + LG C+
Sbjct: 288 NCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCK 347
Query: 143 VFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVV 202
+ EE IG ++ F+G + CT +LRG +Q ++E ERSLHDA+ ++ + +K+ V
Sbjct: 348 LIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTV 407
Query: 203 AGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRA 262
GGG EM ++ + + PGK+ + + +YAKAL ++P + DNAG+D+ +++ +LRA
Sbjct: 408 YGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRA 467
Query: 263 RHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK-NPRS 321
H++G T G+D+ I D + E V+ L +A+EAA +I+ VD IK PR
Sbjct: 468 AHSEGNTTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRK 527
Query: 322 TV 323
V
Sbjct: 528 RV 529
>gi|38455427 chaperonin containing TCP1, subunit 4 (delta) [Homo
sapiens]
Length = 539
Score = 150 bits (380), Expect = 1e-36
Identities = 96/322 (29%), Positives = 167/322 (51%), Gaps = 13/322 (4%)
Query: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELEL-KAEKDNAEIRVHTVEDYQA 61
D +LV G+ + S +G K KI L+ L K + DN +I V
Sbjct: 220 DCELVEGLVLTQKVSNSGITRVEKA----KIGLIQFCLSAPKTDMDN-QIVVSDYAQMDR 274
Query: 62 IVDAEWNILYDKLEKIHHSGAKVVLSKLPI-----GDVATQYFADRDMFCAGRVPEEDLK 116
++ E + + +++I +G V+L + I D+A + + + ED++
Sbjct: 275 VLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIE 334
Query: 117 RTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGE-RYNFFTGCPK-AKTCTFILRGGA 174
G ++ +AD+LG ++ EE + G + TGC KT T ++RG
Sbjct: 335 FICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRGSN 394
Query: 175 EQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAY 234
+ +EE ERS+HDA+ ++R +K +++AGGGA E+EL+ L +YSRT+ G + + A+
Sbjct: 395 KLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAF 454
Query: 235 AKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMV 294
A A+E+IP L +NAG + + + +LR RHAQG G+++ I++ E V +P +V
Sbjct: 455 ADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTAGINVRKGGISNILEELVVQPLLV 514
Query: 295 RINALTAASEAACLIVSVDETI 316
++ALT A+E I+ +D+ +
Sbjct: 515 SVSALTLATETVRSILKIDDVV 536
>gi|58331171 chaperonin containing TCP1, subunit 6A isoform b [Homo
sapiens]
Length = 486
Score = 133 bits (334), Expect = 3e-31
Identities = 83/307 (27%), Positives = 153/307 (49%), Gaps = 9/307 (2%)
Query: 26 KKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKV- 84
K+ + I NV LE + + N+ + E+ + +V AE + D+++KI KV
Sbjct: 178 KRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRKVC 237
Query: 85 --------VLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSAD 136
V+++ I + + + R +++R +ACGG S + LS D
Sbjct: 238 GDSDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPD 297
Query: 137 VLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAI 196
LG + E +G E++ F C ++ T +++G + + + + ++ D + V+ AI
Sbjct: 298 CLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAI 357
Query: 197 KNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNI 256
+ VV G GA+E+ +++ L + ++ G+ QL + A+A AL IIP+ L N+GFD
Sbjct: 358 DDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQET 417
Query: 257 LNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 316
L K++A H++ G GVD+N + E VW+ V+ L + + A I+ VDE +
Sbjct: 418 LVKIQAEHSESGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIM 477
Query: 317 KNPRSTV 323
+ S++
Sbjct: 478 RAGMSSL 484
>gi|4502643 chaperonin containing TCP1, subunit 6A isoform a [Homo
sapiens]
Length = 531
Score = 133 bits (334), Expect = 3e-31
Identities = 83/307 (27%), Positives = 153/307 (49%), Gaps = 9/307 (2%)
Query: 26 KKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKV- 84
K+ + I NV LE + + N+ + E+ + +V AE + D+++KI KV
Sbjct: 223 KRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRKVC 282
Query: 85 --------VLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSAD 136
V+++ I + + + R +++R +ACGG S + LS D
Sbjct: 283 GDSDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPD 342
Query: 137 VLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAI 196
LG + E +G E++ F C ++ T +++G + + + + ++ D + V+ AI
Sbjct: 343 CLGHAGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAI 402
Query: 197 KNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNI 256
+ VV G GA+E+ +++ L + ++ G+ QL + A+A AL IIP+ L N+GFD
Sbjct: 403 DDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQET 462
Query: 257 LNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETI 316
L K++A H++ G GVD+N + E VW+ V+ L + + A I+ VDE +
Sbjct: 463 LVKIQAEHSESGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522
Query: 317 KNPRSTV 323
+ S++
Sbjct: 523 RAGMSSL 529
>gi|58331173 chaperonin containing TCP1, subunit 6B [Homo sapiens]
Length = 530
Score = 132 bits (331), Expect = 6e-31
Identities = 86/330 (26%), Positives = 161/330 (48%), Gaps = 12/330 (3%)
Query: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 62
D++L+ G+ + + K+ + I + NV LE + + N+ T E+ + +
Sbjct: 203 DTKLIQGLVLDHGARHPDMK---KRVEDAFILICNVSLEYEKTEVNSGFFYKTAEEKEKL 259
Query: 63 VDAEWNILYDKLEKIHHSGAKV---------VLSKLPIGDVATQYFADRDMFCAGRVPEE 113
V AE + D+++KI KV V+++ I + A + R
Sbjct: 260 VKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIVALRRAKRR 319
Query: 114 DLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKTCTFILRGG 173
+++R +ACGG S L+ D LG + E +G E++ F C + T +++G
Sbjct: 320 NMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGP 379
Query: 174 AEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGA 233
+ + + + ++ D + ++ AI++ +V G GAIE+ +++ L Y +I G+ +L + A
Sbjct: 380 NKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQA 439
Query: 234 YAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAM 293
+A AL IIP+ L NAG+D L K++A H + GVD+N + +A VW+
Sbjct: 440 FADALLIIPKVLAQNAGYDPQETLVKVQAEHVESKQLVGVDLNTGEPMVAADAGVWDNYC 499
Query: 294 VRINALTAASEAACLIVSVDETIKNPRSTV 323
V+ L + + A I+ VDE ++ S++
Sbjct: 500 VKKQLLHSCTVIATNILLVDEIMRAGMSSL 529
>gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Homo
sapiens]
Length = 541
Score = 131 bits (330), Expect = 8e-31
Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 6/318 (1%)
Query: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 62
D++L+ GV K FS+ PKK + KIA+L E K ++ V +VEDY+A+
Sbjct: 221 DTKLIKGVIVDKDFSHP---QMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKAL 277
Query: 63 VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMAC 122
E + +++I +GA + + + D A ++ V +++ +A
Sbjct: 278 QKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIAT 337
Query: 123 GGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFT--GCPKAKTCTFILRGGAEQFMEE 180
GG I + L+A+ LG + +E G + C ++ T +RGG + +EE
Sbjct: 338 GGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEE 397
Query: 181 TERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEI 240
+RSLHDA+ ++R I+++ VV GGGA E+ + + + P +Q + A+A ALE+
Sbjct: 398 AKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEV 457
Query: 241 IPRQLCDNAGFDATNILNKLRARHA-QGGTWYGVDINNEDIADNFEAFVWEPAMVRINAL 299
IP L +N+G + + ++RAR + G+D ++ D + V E + + +
Sbjct: 458 IPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQI 517
Query: 300 TAASEAACLIVSVDETIK 317
+ A++ +I+ +D+ K
Sbjct: 518 SLATQMVRMILKIDDIRK 535
>gi|48762932 chaperonin containing TCP1, subunit 8 (theta) [Homo
sapiens]
Length = 548
Score = 119 bits (298), Expect = 4e-27
Identities = 81/316 (25%), Positives = 149/316 (47%), Gaps = 8/316 (2%)
Query: 4 SQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIV 63
S ++ G+ FKK E + KIA+ + + + + + T E+
Sbjct: 215 SSVLHGMVFKKET-----EGDVTSVKDAKIAVYSCPFDGMITETKGTVLIKTAEELMNFS 269
Query: 64 DAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACG 123
E N++ +++ I +GA VV++ + D+A Y ++ + DL+R G
Sbjct: 270 KGEENLMDAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLRRLCKTVG 329
Query: 124 GSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPK-AKTCTFILRGGAEQFMEETE 182
+ + + +G C +++G + F + T +LRG + M++ E
Sbjct: 330 ATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIE 389
Query: 183 RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIP 242
R++ D + + ++ +V GGGA E+EL+K + Y T PG +Q I +A+A E IP
Sbjct: 390 RAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIP 449
Query: 243 RQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNE--DIADNFEAFVWEPAMVRINALT 300
R L +N+G A +++KL A H +G G+DI E + D EA + + + + A+
Sbjct: 450 RALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIK 509
Query: 301 AASEAACLIVSVDETI 316
A+ AA ++ VD+ I
Sbjct: 510 LATNAAVTVLRVDQII 525
>gi|7657253 T-complex protein 1 [Homo sapiens]
Length = 557
Score = 76.6 bits (187), Expect = 3e-14
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 3/184 (1%)
Query: 139 GRCQVFEETQIG-GERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIK 197
G+CQ ++G G F C T +LRG Q + E++++ I + +
Sbjct: 345 GKCQRVYRQELGDGLAVVFEWECTGTPALTVVLRGATTQGLRSAEQAVYHGIDAYFQLCQ 404
Query: 198 NDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNIL 257
+ ++ G GA EM L+K L D + G A+A AL+ +P+ L +NAG ++++
Sbjct: 405 DPRLIPGAGATEMALAKMLSDKGSRLEGPSGPAFLAFAWALKYLPKTLAENAGLAVSDVM 464
Query: 258 NKLRARHAQGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 317
++ H G GV E I + + VW+ +V+ A +E +V+VDE +
Sbjct: 465 AEMSGVHQGGNLLMGV--GTEGIINVAQEGVWDTLIVKAQGFRAVAEVVLQLVTVDEIVV 522
Query: 318 NPRS 321
+S
Sbjct: 523 AKKS 526
>gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 2 [Homo sapiens]
Length = 2098
Score = 40.4 bits (93), Expect = 0.002
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 15/179 (8%)
Query: 3 DSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAI 62
DS +V G K ++ K NPKI LL +E ++ + I
Sbjct: 677 DSVVVNGFVCTKNIAHKKMSSCIK---NPKILLLKCSIEYLYREETKFTCI------DPI 727
Query: 63 VDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKR-TMMA 121
V E L + +++I +VL + + +A + + V + L+R + M
Sbjct: 728 VLQEREFLKNYVQRIVDVRPTLVLVEKTVSRIAQDMLLEHGITLVINVKSQVLERISRMT 787
Query: 122 CGGSIQTSVNALSADVLGRC-----QVFEETQIGGERYNFFTGCPKAKTCTFILRGGAE 175
G + + L+ LG C Q+F+ + FF GCP+ CT LRGG++
Sbjct: 788 QGDLVMSMDQLLTKPHLGTCHKFYMQIFQLPNEQTKTLMFFEGCPQHLGCTIKLRGGSD 846
>gi|41399285 chaperonin [Homo sapiens]
Length = 573
Score = 37.4 bits (85), Expect = 0.019
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 169 ILRGGAEQFMEETERS--LHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGK 226
+L+ G +E E+ + DA+ R A++ V+ GG A L + + P
Sbjct: 403 VLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCA----LLRCIPALDSLTPAN 458
Query: 227 QQLLIG--AYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNF 284
+ IG + L+I + NAG + + I+ K+ Q + G D D +
Sbjct: 459 EDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKI----MQSSSEVGYDAMAGDFVNMV 514
Query: 285 EAFVWEPAMVRINALTAASEAACLIVSVDETIKN-PRSTVDAPTAAGRGRGRG 336
E + +P V AL A+ A L+ + + + P+ D A G G G
Sbjct: 515 EKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDPGMGAMGGMGGG 567
>gi|31542947 chaperonin [Homo sapiens]
Length = 573
Score = 37.4 bits (85), Expect = 0.019
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 13/173 (7%)
Query: 169 ILRGGAEQFMEETERS--LHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGK 226
+L+ G +E E+ + DA+ R A++ V+ GG A L + + P
Sbjct: 403 VLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCA----LLRCIPALDSLTPAN 458
Query: 227 QQLLIG--AYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTWYGVDINNEDIADNF 284
+ IG + L+I + NAG + + I+ K+ Q + G D D +
Sbjct: 459 EDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKI----MQSSSEVGYDAMAGDFVNMV 514
Query: 285 EAFVWEPAMVRINALTAASEAACLIVSVDETIKN-PRSTVDAPTAAGRGRGRG 336
E + +P V AL A+ A L+ + + + P+ D A G G G
Sbjct: 515 EKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDPGMGAMGGMGGG 567
>gi|9055272 McKusick-Kaufman syndrome protein [Homo sapiens]
Length = 570
Score = 32.7 bits (73), Expect = 0.48
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 151 GERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEM 210
G ++ F +A C+ +L + +E + + A+ +++ +K + GGG E
Sbjct: 356 GSKHFFHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTET 415
Query: 211 ELSKYLRDYSRTIP-----------GKQQLLIGAYAKALEIIPRQLCDNAG 250
L+ Y+R + P + QL+ A+ ALE + L + G
Sbjct: 416 HLAAYIRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGG 466
>gi|25914754 McKusick-Kaufman syndrome protein [Homo sapiens]
Length = 570
Score = 32.7 bits (73), Expect = 0.48
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 151 GERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEM 210
G ++ F +A C+ +L + +E + + A+ +++ +K + GGG E
Sbjct: 356 GSKHFFHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTET 415
Query: 211 ELSKYLRDYSRTIP-----------GKQQLLIGAYAKALEIIPRQLCDNAG 250
L+ Y+R + P + QL+ A+ ALE + L + G
Sbjct: 416 HLAAYIRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGG 466
>gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo
sapiens]
Length = 680
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 292 AMVRINALTAASEAACLIVSVDETIK---------NPRSTVDAPTAAGRGRGRGR 337
AM R AL + SE + S D+ + + ++ A T GRGRGRGR
Sbjct: 522 AMTRARALRSQSEESASAFSADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGR 576
>gi|5031923 meiotic recombination 11 homolog A isoform 1 [Homo
sapiens]
Length = 708
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 292 AMVRINALTAASEAACLIVSVDETIK---------NPRSTVDAPTAAGRGRGRGR 337
AM R AL + SE + S D+ + + ++ A T GRGRGRGR
Sbjct: 522 AMTRARALRSQSEESASAFSADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGR 576
>gi|226437568 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 3 [Homo sapiens]
Length = 604
Score = 30.0 bits (66), Expect = 3.1
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 116 KRTMMACGGSIQTSVNALSADVLGRCQVFEET-QIGGERYNFFTGC-PKAKTCTFILRGG 173
K A G + T ++ DV + VF++ ++ + G PK +C G
Sbjct: 260 KEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLSCK-----G 314
Query: 174 AEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTI 223
E T R+ DA +VR A + VV G G + ME++ YL + + ++
Sbjct: 315 KEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEKAHSV 364
>gi|65787454 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 2 [Homo sapiens]
Length = 598
Score = 30.0 bits (66), Expect = 3.1
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 116 KRTMMACGGSIQTSVNALSADVLGRCQVFEET-QIGGERYNFFTGC-PKAKTCTFILRGG 173
K A G + T ++ DV + VF++ ++ + G PK +C G
Sbjct: 254 KEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLSCK-----G 308
Query: 174 AEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTI 223
E T R+ DA +VR A + VV G G + ME++ YL + + ++
Sbjct: 309 KEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEKAHSV 358
>gi|21389617 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 1 [Homo sapiens]
Length = 605
Score = 30.0 bits (66), Expect = 3.1
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 116 KRTMMACGGSIQTSVNALSADVLGRCQVFEET-QIGGERYNFFTGC-PKAKTCTFILRGG 173
K A G + T ++ DV + VF++ ++ + G PK +C G
Sbjct: 254 KEFFRAYGIEVLTEAQVVTVDVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLSCK-----G 308
Query: 174 AEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTI 223
E T R+ DA +VR A + VV G G + ME++ YL + + ++
Sbjct: 309 KEVENVFTIRTPEDANRVVRLARGRNVVVVGAGFLGMEVAAYLTEKAHSV 358
>gi|115527120 nebulin [Homo sapiens]
Length = 6669
Score = 29.6 bits (65), Expect = 4.0
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 14 KTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIV---DAEWNIL 70
K + E PK H+ ++A + + E K +N + HT D ++ DA+ NI
Sbjct: 2074 KMVGFRSLEDDPKLVHSMQVAKMQSDREYKKNYENTKTSYHTPADMLSVTAAKDAQANIT 2133
Query: 71 YDKLEKIHH 79
+ + H
Sbjct: 2134 NTNYKHLIH 2142
>gi|187608809 hypothetical protein LOC23240 isoform 2 [Homo sapiens]
Length = 1609
Score = 29.6 bits (65), Expect = 4.0
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 211 ELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTW 270
E+ K + + ++P Q+ G Y K + + C ++ D + +RA G+W
Sbjct: 1266 EVCKADAEIASSLPAAQREAEGYYQKPEKKCVDKFCSDSSSDCGSSSGSVRASRGSWGSW 1325
Query: 271 YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPTAA 329
++ D +A + PA ++ SEA + +++ I NP + P A
Sbjct: 1326 SSTSSSDGDKKPMVDAQHFLPAGDSVSQNDFPSEAP-ISLNLSHNICNPMTVNSLPQYA 1383
>gi|196114949 hypothetical protein LOC23240 isoform 1 [Homo sapiens]
Length = 1610
Score = 29.6 bits (65), Expect = 4.0
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 211 ELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGTW 270
E+ K + + ++P Q+ G Y K + + C ++ D + +RA G+W
Sbjct: 1267 EVCKADAEIASSLPAAQREAEGYYQKPEKKCVDKFCSDSSSDCGSSSGSVRASRGSWGSW 1326
Query: 271 YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPRSTVDAPTAA 329
++ D +A + PA ++ SEA + +++ I NP + P A
Sbjct: 1327 SSTSSSDGDKKPMVDAQHFLPAGDSVSQNDFPSEAP-ISLNLSHNICNPMTVNSLPQYA 1384
>gi|169160654 PREDICTED: similar to small nuclear ribonucleoprotein
D1 polypeptide 16kDa [Homo sapiens]
Length = 119
Score = 28.9 bits (63), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 308 LIVSVDETIKNPRSTVDAPTAAGRGRGRGR 337
L+V V+ +K+ + A GRGRGRGR
Sbjct: 79 LLVDVEPKVKSKKREAVAGRGRGRGRGRGR 108
>gi|5902102 small nuclear ribonucleoprotein D1 polypeptide 16kDa
[Homo sapiens]
Length = 119
Score = 28.9 bits (63), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 308 LIVSVDETIKNPRSTVDAPTAAGRGRGRGR 337
L+V V+ +K+ + A GRGRGRGR
Sbjct: 79 LLVDVEPKVKSKKREAVAGRGRGRGRGRGR 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,762,209
Number of Sequences: 37866
Number of extensions: 468882
Number of successful extensions: 1248
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 80
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.