Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 58219008
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58219008 RAD26L hypothetical protein [Homo sapiens]
(712 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 1441 0.0
gi|4557565 excision repair cross-complementing rodent repair def... 287 2e-77
gi|6912622 RAD54 homolog B [Homo sapiens] 252 7e-67
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 248 1e-65
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 243 4e-64
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 240 4e-63
gi|216548193 RAD54-like protein [Homo sapiens] 236 4e-62
gi|216548186 RAD54-like protein [Homo sapiens] 236 4e-62
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 236 7e-62
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 233 6e-61
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 229 9e-60
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 228 2e-59
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 227 3e-59
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 226 6e-59
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 225 1e-58
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 225 1e-58
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 225 1e-58
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 225 1e-58
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 225 1e-58
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 225 1e-58
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 225 1e-58
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 225 1e-58
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 224 2e-58
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 224 2e-58
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 224 2e-58
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 219 7e-57
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 219 9e-57
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 219 9e-57
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 219 9e-57
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 215 1e-55
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 1441 bits (3731), Expect = 0.0
Identities = 712/712 (100%), Positives = 712/712 (100%)
Query: 1 MQPGSAPPPGRMDPSAPQPRAETSGKDIWHPGERCLAPSPDNGKLCEASIKSITVDENGK 60
MQPGSAPPPGRMDPSAPQPRAETSGKDIWHPGERCLAPSPDNGKLCEASIKSITVDENGK
Sbjct: 1 MQPGSAPPPGRMDPSAPQPRAETSGKDIWHPGERCLAPSPDNGKLCEASIKSITVDENGK 60
Query: 61 SFAVVLYADFQERKIPLKQLQEVKFVKDCPRNLIFDDEDLEKPYFPNRKFPSSSVAFKLS 120
SFAVVLYADFQERKIPLKQLQEVKFVKDCPRNLIFDDEDLEKPYFPNRKFPSSSVAFKLS
Sbjct: 61 SFAVVLYADFQERKIPLKQLQEVKFVKDCPRNLIFDDEDLEKPYFPNRKFPSSSVAFKLS 120
Query: 121 DNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKK 180
DNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKK
Sbjct: 121 DNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKK 180
Query: 181 GTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHG 240
GTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHG
Sbjct: 181 GTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHG 240
Query: 241 NRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMK 300
NRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMK
Sbjct: 241 NRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMK 300
Query: 301 ALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRE 360
ALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRE
Sbjct: 301 ALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRE 360
Query: 361 LATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 420
LATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV
Sbjct: 361 LATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 420
Query: 421 TLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSK 480
TLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSK
Sbjct: 421 TLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSK 480
Query: 481 QQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLL 540
QQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLL
Sbjct: 481 QQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLL 540
Query: 541 FSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLG 600
FSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLG
Sbjct: 541 FSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLG 600
Query: 601 LNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQ 660
LNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQ
Sbjct: 601 LNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQ 660
Query: 661 QLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRSQGSCLTKDILEV 712
QLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRSQGSCLTKDILEV
Sbjct: 661 QLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRSQGSCLTKDILEV 712
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 287 bits (735), Expect = 2e-77
Identities = 190/566 (33%), Positives = 296/566 (52%), Gaps = 69/566 (12%)
Query: 121 DNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKK 180
D G +P + + L YQ+ G R+L+ + G ILGD+MGLGKT+Q+I+FLA + + K
Sbjct: 494 DEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSK 553
Query: 181 -GTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGY-FRVTVL 238
TR + + E L T +IV P +V++ W E TW FRV +L
Sbjct: 554 IRTRGS-----------NYRFEGLGPT-----VIVCPTTVMHQWVKEFHTWWPPFRVAIL 597
Query: 239 HGN----RKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAR 294
H K +LIR I +T+Y +RL D+++ +W VI+DE H+I+NP A
Sbjct: 598 HETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAA 657
Query: 295 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRH 354
VT K + RI L+G+ +QNN++ELW + D+ PG LG+ F +QFS P+ G
Sbjct: 658 VTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYS 717
Query: 355 TATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKD--QLPKKEDRMVYCSLTDFQKAVYQ 412
A+ ++ T K L ++ + LRR K+ +K LP K +++++C LTD Q VYQ
Sbjct: 718 NASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQ 777
Query: 413 TVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVAL 472
+++++V IL + S L L+K+ NH L
Sbjct: 778 NFVDSKEVYRILNG--------------------------EMQIFSGLIALRKICNHPDL 811
Query: 473 LQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCR 532
+ +K + D D +++ + + K SGKM V++ LL
Sbjct: 812 FSGGPKN------LKGLPD-------DELEEDQFGYW------KRSGKMIVVESLLKIWH 852
Query: 533 KNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLV 592
K +VLLFS S ++LD+L+ + A Y ++DG+T R ++ +N + + L+
Sbjct: 853 KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLL 912
Query: 593 STMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652
+T GGLG+N GAN VV++DP WNP+ D QA +RA+RIGQ + V V RL++ GT+EE +
Sbjct: 913 TTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 972
Query: 653 YLRQIYKQQLHCVVVGSENAKRYFEA 678
Y RQI+KQ L V+ +R+F++
Sbjct: 973 YHRQIFKQFLTNRVLKDPKQRRFFKS 998
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 252 bits (644), Expect = 7e-67
Identities = 190/601 (31%), Positives = 298/601 (49%), Gaps = 78/601 (12%)
Query: 127 PYTINRYLRDYQREGTRFLY----GHYIHGG-GCILGDDMGLGKTVQVISFLAAVLHKKG 181
PY + +LR +Q+EG FLY G ++G G IL D+MGLGKT+Q IS +
Sbjct: 290 PYLVY-HLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLI-------- 340
Query: 182 TREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHG 240
+ L+ KK LIV P S++ NWK E W G R+ +
Sbjct: 341 -----------WTLQCQGPYGGKPVIKKT-LIVTPGSLVNNWKKEFQKWLGSERIKIFTV 388
Query: 241 NRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMK 300
++ +K + + +YE L LD++ ++++ +I DE HR+KN + T +
Sbjct: 389 DQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALI 448
Query: 301 ALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRE 360
+L C RI LTGT +QN+++E + ++D+ PG+LGS + ++K + +P+ + +A++ E
Sbjct: 449 SLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEE 508
Query: 361 LATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 420
G + L + LRRT+ +I LP K + +V+C Q +Y+ +L ++ V
Sbjct: 509 KELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVV 568
Query: 421 TLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL------- 473
LQ G + +L + L+K+ NH LL
Sbjct: 569 RFCLQ-----------------------GLLENSPHLICIGALKKLCNHPCLLFNSIKEK 605
Query: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLN--HC 531
+ +ST + E K + + S FP L K SGK++VL +LL H
Sbjct: 606 ECSSTCDKNEE--KSLYKGLLSVFPADYN-------PLLFTEKESGKLQVLSKLLAVIHE 656
Query: 532 RKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNIC 590
+ +KV+L S T+ L++LQ+ C G Y RLDG T +R +IV FNS I
Sbjct: 657 LRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIF 716
Query: 591 LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEE 650
L+S+ AGG+GLN +G + ++L+D WNPA D+QA+ R +R GQ V + RL++ GT+EE
Sbjct: 717 LLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEE 776
Query: 651 IMYLRQIYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRSQGSCLTKDIL 710
+Y RQI KQ L VV + + E +Q S E + NLF C+T D+L
Sbjct: 777 KIYQRQISKQGLCGAVV---DLTKTSEHIQFSVEE------LKNLFTLHESSDCVTHDLL 827
Query: 711 E 711
+
Sbjct: 828 D 828
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 248 bits (634), Expect = 1e-65
Identities = 178/577 (30%), Positives = 277/577 (48%), Gaps = 96/577 (16%)
Query: 96 DDEDLEKPYFPNRKFPSSSVAFKLSDNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGC 155
+ E+ E+ +RK + + F++S + Y LRDYQ G +L Y +G
Sbjct: 150 EQEEDEELLSESRKTSNVCIRFEVSPS-----YVKGGPLRDYQIRGLNWLISLYENGVNG 204
Query: 156 ILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVA 215
IL D+MGLGKT+Q I+ L + H + N+P +++
Sbjct: 205 ILADEMGLGKTLQTIALLGYLKHYR--------NIPG-----------------PHMVLV 239
Query: 216 PLSVLYNWKDELDTWGYFRVTVLHGNRKDNELIRVKQR----KCEIALTTYETLRLCLDE 271
P S L+NW +E W + KD ++ + ++ +T+YE +
Sbjct: 240 PKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSV 299
Query: 272 LNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVP 331
W +++DEAHRIKN K++++E+++ K R+ LTGT LQNN+ ELW ++++ +P
Sbjct: 300 FKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLP 359
Query: 332 GLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQL 391
+ S F F TK L +K ++RL + + LRR KT ++ L
Sbjct: 360 DVFNSADDFDSWFD-----------TKNCLGD-QKLVERLHAVLKPFLLRRIKTDVEKSL 407
Query: 392 PKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGET 451
P K++ +Y L+ Q+ Y +L +D+ ++ NS G+
Sbjct: 408 PPKKEIKIYLGLSKMQREWYTKIL-MKDIDVL----------------------NSSGKM 444
Query: 452 VKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFET 511
K L+ L L+K NH L A T + + S
Sbjct: 445 DKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTT-----DEHIVSN--------------- 484
Query: 512 LSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKS 571
SGKM VL +LL ++ +VL+FS T+LLD+L+ YCM G +Y RLDG T
Sbjct: 485 ------SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPH 538
Query: 572 EERLKIVKEFNSTQDVN-ICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYR 630
EER + ++ FN+ I ++ST AGGLG+N A+VV+L+D WNP DLQA+DRA+R
Sbjct: 539 EEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHR 598
Query: 631 IGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVV 667
IGQ + V+V RLI+ TVEE + R K +L +V+
Sbjct: 599 IGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 635
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 243 bits (620), Expect = 4e-64
Identities = 201/674 (29%), Positives = 308/674 (45%), Gaps = 120/674 (17%)
Query: 80 LQEVKFVKDCPRNLIFDDE----DLEKPYFPNRKFPS-----SSVAFKLSDNGDS----- 125
L+ VK K+ +N ++ +L K FPN K S +L++ GD
Sbjct: 22 LRYVKEAKEATKNGDLEEAFKLFNLAKDIFPNEKVLSRIQKIQEALEELAEQGDDEFTDV 81
Query: 126 ------IPYTINRYLRDYQREGTRFLYGHYIHGG-GCILGDDMGLGKTVQVISFLAAVLH 178
+ ++ L ++Q+EG FLY Y G G IL DDMGLGKTVQ+I+FL+ +
Sbjct: 82 CNSGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGM-- 139
Query: 179 KKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTV 237
++ L++ P +++ W E W RV
Sbjct: 140 ------------------------FDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKT 175
Query: 238 LHGNRKD---NELIRVKQRKCEIALTTYETLRLCLDELNSLE-----WSAVIVDEAHRIK 289
HG KD L R++QR + +TTY+ L +L+S W VI+DEAH+IK
Sbjct: 176 FHGPSKDERTRNLNRIQQRN-GVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIK 234
Query: 290 NPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPG-LLGSGTYFKKQFSDPV 348
+ +A+ + R+ LTGT +QNN++ELW + D+A G LLG+ FK ++ +P+
Sbjct: 235 TSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPI 294
Query: 349 EHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQ------------------ 390
+ AT E A G K + L + +FLRRTK ++ +
Sbjct: 295 TRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDA 354
Query: 391 ------LPKKEDRMVYCSLTDFQKAVYQTVLETEDV-TLILQSSEPCTCRSGQKRRNCCY 443
L +K D +++ L Q+ +Y+ + + + L++++ P
Sbjct: 355 ICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSP-------------- 400
Query: 444 KTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQK 503
L+ L VL+K+ +H LL A + PD V
Sbjct: 401 -------------LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPD-VDH 446
Query: 504 SKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYR 563
+TL + SGKM L LL R + L+FS S ++L+++++
Sbjct: 447 IDQVTDDTLMEE--SGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTL 504
Query: 564 RLDGS-TKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDL 622
R+DG+ T ER K + F +D ++ L++T GG+GL A VV+FDP+WNPA D
Sbjct: 505 RIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDA 564
Query: 623 QAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVG-SENAKRYFEAVQG 681
QA+DR YRIGQ +V V RLI+ GTVEE +Y RQ++K L G +N RYF
Sbjct: 565 QAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYF----- 619
Query: 682 SKEHQGELFGIHNL 695
SK+ ELF I +L
Sbjct: 620 SKQELRELFTIEDL 633
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 240 bits (612), Expect = 4e-63
Identities = 178/589 (30%), Positives = 277/589 (47%), Gaps = 108/589 (18%)
Query: 96 DDEDLEKPYFPNRKFPSSSVAFKLSDNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGC 155
+ E+ E+ +RK + + F++S + Y LRDYQ G +L Y +G
Sbjct: 150 EQEEDEELLSESRKTSNVCIRFEVSPS-----YVKGGPLRDYQIRGLNWLISLYENGVNG 204
Query: 156 ILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVA 215
IL D+MGLGKT+Q I+ L + H + N+P +++
Sbjct: 205 ILADEMGLGKTLQTIALLGYLKHYR--------NIPG-----------------PHMVLV 239
Query: 216 PLSVLYNWKDELDTWGYFRVTVLHGNRKDNELIRVKQR----KCEIALTTYETLRLCLDE 271
P S L+NW +E W + KD ++ + ++ +T+YE +
Sbjct: 240 PKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSV 299
Query: 272 LNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVP 331
W +++DEAHRIKN K++++E+++ K R+ LTGT LQNN+ ELW ++++ +P
Sbjct: 300 FKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLP 359
Query: 332 GLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQL 391
+ S F F TK L +K ++RL + + LRR KT ++ L
Sbjct: 360 DVFNSADDFDSWFD-----------TKNCLG-DQKLVERLHAVLKPFLLRRIKTDVEKSL 407
Query: 392 PKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGET 451
P K++ +Y L+ Q+ Y +L +D+ ++ NS G+
Sbjct: 408 PPKKEIKIYLGLSKMQREWYTKIL-MKDIDVL----------------------NSSGKM 444
Query: 452 VKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFET 511
K L+ L L+K NH L A T + + S
Sbjct: 445 DKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTT-----DEHIVSN--------------- 484
Query: 512 LSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKS 571
SGKM VL +LL ++ +VL+FS T+LLD+L+ YCM G +Y RLDG T
Sbjct: 485 ------SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPH 538
Query: 572 EER------------LKIVKEFNSTQDVN-ICLVSTMAGGLGLNFVGANVVVLFDPTWNP 618
EER + ++ FN+ I ++ST AGGLG+N A+VV+L+D WNP
Sbjct: 539 EEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNP 598
Query: 619 ANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVV 667
DLQA+DRA+RIGQ + V+V RLI+ TVEE + R K +L +V+
Sbjct: 599 QVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 647
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 236 bits (603), Expect = 4e-62
Identities = 169/566 (29%), Positives = 284/566 (50%), Gaps = 77/566 (13%)
Query: 130 INRYLRDYQREGTRFLY----GHYIHGG-GCILGDDMGLGKTVQVISFLAAVLHKKGTRE 184
+++ LR +QREG +FL+ I G GCI+ D+MGLGKT+Q I+ + +L
Sbjct: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL------- 201
Query: 185 DIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW--GYFRVTVLHGNR 242
++ P ++V+P S++ NW +E+ W G + + G
Sbjct: 202 --------------RQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGS 247
Query: 243 KDNELIRVK----QRKCEIA----LTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAR 294
KD +++ QR ++ + +YET RL + L VI DE HR+KN + +
Sbjct: 248 KDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQ 307
Query: 295 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRH 354
+ + +L + R+ ++GT +QN++ E + ++ + G+LG+ FKK F P+ G+
Sbjct: 308 TYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDA 367
Query: 355 TATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTV 414
A++ + G + ++ L ++ +RRT ++ LP K +++V C LT Q +Y+
Sbjct: 368 AASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRF 427
Query: 415 L-ETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473
L + + +L+ + LS +T L+K+ NH AL+
Sbjct: 428 LRQAKPAEELLEGK------------------------MSVSSLSSITSLKKLCNHPALI 463
Query: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCR- 532
++ D F A E P+ SGKM VL +L R
Sbjct: 464 YDKCVEEE---------DGFVGALDLFPPGYSSKALE----PQLSGKMLVLDYILAVTRS 510
Query: 533 KNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVN-ICL 591
++ DKV+L S T+ LD+ ++ C A Y RLDG+ ++R K+V+ FNS + + +
Sbjct: 511 RSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFM 570
Query: 592 VSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEI 651
+S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ + + RL+S GT+EE
Sbjct: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEK 630
Query: 652 MYLRQIYKQQL-HCVVVGSENAKRYF 676
++ RQ +K+ L CVV ++ +R+F
Sbjct: 631 IFQRQSHKKALSSCVVDEEQDVERHF 656
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 236 bits (603), Expect = 4e-62
Identities = 169/566 (29%), Positives = 284/566 (50%), Gaps = 77/566 (13%)
Query: 130 INRYLRDYQREGTRFLY----GHYIHGG-GCILGDDMGLGKTVQVISFLAAVLHKKGTRE 184
+++ LR +QREG +FL+ I G GCI+ D+MGLGKT+Q I+ + +L
Sbjct: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL------- 201
Query: 185 DIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW--GYFRVTVLHGNR 242
++ P ++V+P S++ NW +E+ W G + + G
Sbjct: 202 --------------RQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGS 247
Query: 243 KDNELIRVK----QRKCEIA----LTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAR 294
KD +++ QR ++ + +YET RL + L VI DE HR+KN + +
Sbjct: 248 KDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQ 307
Query: 295 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRH 354
+ + +L + R+ ++GT +QN++ E + ++ + G+LG+ FKK F P+ G+
Sbjct: 308 TYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDA 367
Query: 355 TATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTV 414
A++ + G + ++ L ++ +RRT ++ LP K +++V C LT Q +Y+
Sbjct: 368 AASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRF 427
Query: 415 L-ETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473
L + + +L+ + LS +T L+K+ NH AL+
Sbjct: 428 LRQAKPAEELLEGK------------------------MSVSSLSSITSLKKLCNHPALI 463
Query: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCR- 532
++ D F A E P+ SGKM VL +L R
Sbjct: 464 YDKCVEEE---------DGFVGALDLFPPGYSSKALE----PQLSGKMLVLDYILAVTRS 510
Query: 533 KNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVN-ICL 591
++ DKV+L S T+ LD+ ++ C A Y RLDG+ ++R K+V+ FNS + + +
Sbjct: 511 RSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFM 570
Query: 592 VSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEI 651
+S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ + + RL+S GT+EE
Sbjct: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEK 630
Query: 652 MYLRQIYKQQL-HCVVVGSENAKRYF 676
++ RQ +K+ L CVV ++ +R+F
Sbjct: 631 IFQRQSHKKALSSCVVDEEQDVERHF 656
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 236 bits (601), Expect = 7e-62
Identities = 167/549 (30%), Positives = 258/549 (46%), Gaps = 91/549 (16%)
Query: 124 DSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTR 183
DS Y LRDYQ G +L Y +G IL D+MGLGKT+Q IS L + H +
Sbjct: 170 DSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYR--- 226
Query: 184 EDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGNR 242
N+P +++ P S L+NW E W R L G++
Sbjct: 227 -----NIPG-----------------PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDK 264
Query: 243 KDNE-LIR--VKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVM 299
+ +R + + ++ +T+YE L W +++DEAHRIKN K++++E++
Sbjct: 265 EQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIV 324
Query: 300 KALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKR 359
+ K R+ LTGT LQNN+ ELW ++++ +P + S F F
Sbjct: 325 REFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD------------TN 372
Query: 360 ELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETED 419
+K ++RL + + LRR K ++ LP K++ +Y L+ Q+ Y +L +D
Sbjct: 373 NCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL-MKD 431
Query: 420 VTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTS 479
+ ++ NS G+ K L+ L L+K NH L A
Sbjct: 432 IDIL----------------------NSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 469
Query: 480 KQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVL 539
T + + + SGKM VL +LL ++ +VL
Sbjct: 470 PPYTTDMHLVTN--------------------------SGKMVVLDKLLPKLKEQGSRVL 503
Query: 540 LFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVN-ICLVSTMAGG 598
+FS T++LD+L+ YCM +Y RLDG T +ER + +N + ++ST AGG
Sbjct: 504 IFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGG 563
Query: 599 LGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIY 658
LG+N A+VV+L+D WNP DLQA+DRA+RIGQ + V+V R I+ TVEE + R
Sbjct: 564 LGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEM 623
Query: 659 KQQLHCVVV 667
K +L +V+
Sbjct: 624 KLRLDSIVI 632
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 233 bits (593), Expect = 6e-61
Identities = 175/549 (31%), Positives = 260/549 (47%), Gaps = 107/549 (19%)
Query: 134 LRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 193
LRDYQ G +L + G CIL D+MGLGKT+Q ISFL + H+
Sbjct: 481 LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHE-------------- 526
Query: 194 LLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGNRKDNELIR--- 249
FL+V PLS L +W+ E+ TW V G+ +IR
Sbjct: 527 -----------HQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHE 575
Query: 250 -----VKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKC 304
K+ K I LTTYE L L L W+ + VDEAHR+KN + + + + K
Sbjct: 576 WTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKS 635
Query: 305 NVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATG 364
N R+ +TGT LQN++KELW ++ + +P S F++ EHG+ G
Sbjct: 636 NHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE------EHGK-----------G 678
Query: 365 RK-AMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLI 423
R+ L K++ + LRR K ++ LP K ++++ ++ QK Y+ +L
Sbjct: 679 REYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWIL-------- 730
Query: 424 LQSSEPCTCRSGQKRRNCCYKTNSHGETVKTL-YLSYLTVLQKVANHVALLQAASTSK-- 480
RN YK S G T +L+ + L+K NH L++ ++
Sbjct: 731 --------------TRN--YKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFY 774
Query: 481 -QQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVL 539
+QE L I + SGK+ +L +LL R+ ++VL
Sbjct: 775 NKQEALQHLI--------------------------RSSGKLILLDKLLIRLRERGNRVL 808
Query: 540 LFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC-LVSTMAGG 598
+FS ++LD+L +Y ++RLDGS K E R + + FN+ + C L+ST AGG
Sbjct: 809 IFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGG 868
Query: 599 LGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIY 658
LG+N A+ VV+FD WNP NDLQA RA+RIGQ + V + RL++ G+VEE + R
Sbjct: 869 LGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKK 928
Query: 659 KQQLHCVVV 667
K L +V+
Sbjct: 929 KMVLDHLVI 937
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 229 bits (583), Expect = 9e-60
Identities = 172/572 (30%), Positives = 281/572 (49%), Gaps = 70/572 (12%)
Query: 126 IPYTINRYLRDYQREGTR---FLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGT 182
IP IN LR YQ++G FL + +HG IL DDMGLGKT+Q I LA H
Sbjct: 1258 IPVPINAELRKYQQDGVNWLAFLNKYKLHG---ILCDDMGLGKTLQSICILAGD-HCHRA 1313
Query: 183 REDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGN 241
+E + + E + PL S L+V P ++ +W DE+ + + LH
Sbjct: 1314 QEYARSKLAECM-------PLPS------LVVCPPTLTGHWVDEVGKFCSREYLNPLHYT 1360
Query: 242 RKDNELIRVKQ--RKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVM 299
E IR++ ++ + + +Y+ +R +D +++++ I+DE H IKN K ++++ +
Sbjct: 1361 GPPTERIRLQHQVKRHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAV 1420
Query: 300 KALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKR 359
K L N RI L+GT +QNN+ ELW + D+ +PG LG+ F ++ P+ + ++ R
Sbjct: 1421 KQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSR 1480
Query: 360 ELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETED 419
E G AM L +++ + LRR K + LP K + YC+L+ Q +Y+ ++
Sbjct: 1481 EQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRA 1540
Query: 420 VTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTS 479
+ ++ T ++ K H L L+K+ NH AL+
Sbjct: 1541 KCDVDETVSSATLSEETEKPKL--KATGH-------VFQALQYLRKLCNHPALV------ 1585
Query: 480 KQQETLIKRICDQVFSRFPDFVQKSKDAAFE--TLSDPKYSGKMKVLQQLLNHCRKN--- 534
+ + P+F ++ A + +L D +++ K+ L+QLL C
Sbjct: 1586 -------------LTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLLDCGLGNGS 1632
Query: 535 -----------RDKVLLFSFSTKLLDVLQQYCMASGLD---YRRLDGSTKSEERLKIVKE 580
+ ++L+F +LD+++ + L Y RLDGS +R IV
Sbjct: 1633 TSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSR 1692
Query: 581 FNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVL 640
FN+ +++ L++T GGLGLN GA+ VV + WNP DLQA+DRA+RIGQ R V V
Sbjct: 1693 FNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1752
Query: 641 RLISLGTVEEIMYLRQIYKQQLHCVVVGSENA 672
RLI+ GT+EE + Q +K + V+ EN+
Sbjct: 1753 RLITRGTLEEKIMGLQKFKMNIANTVISQENS 1784
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 228 bits (580), Expect = 2e-59
Identities = 161/564 (28%), Positives = 259/564 (45%), Gaps = 96/564 (17%)
Query: 128 YTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIE 187
Y N LR+YQ EG +L ++ + CIL D+MGLGKT+Q I+FL + + KG
Sbjct: 962 YKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEI-YLKGIHGP-- 1018
Query: 188 NNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNEL 247
FL++APLS + NW+ E TW V V HG++
Sbjct: 1019 -----------------------FLVIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRT 1055
Query: 248 IRVKQR--------------KCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKA 293
I++ + K +TT+E + EL ++ W V++DEAHR+KN
Sbjct: 1056 IQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNC 1115
Query: 294 RVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQR 353
++ E +K + ++ LTGT LQN ++EL+ ++ + P S T F ++F D Q
Sbjct: 1116 KLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQ- 1174
Query: 354 HTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQT 413
+Q+L + LRR K ++ L KE+ ++ LT+ QK Y+
Sbjct: 1175 --------------VQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRA 1220
Query: 414 VLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473
+LE +N + + G+ L+ + L+K NH L+
Sbjct: 1221 ILE----------------------KNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1258
Query: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRK 533
A +E +++ + + PDF ++ A +GK+ ++ +LL +
Sbjct: 1259 NGA-----EEKILEEFKETHNAESPDFQLQAMIQA---------AGKLVLIDKLLPKLKA 1304
Query: 534 NRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQ-DVNICLV 592
+VL+FS + LD+L+ Y + Y R+DG + R + F+ D + L+
Sbjct: 1305 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 1364
Query: 593 STMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652
T AGGLG+N A+ ++FD WNP NDLQA R +RIGQ + VK+ RLI+ + E M
Sbjct: 1365 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREM 1424
Query: 653 YLRQIYKQQLHCVVV----GSENA 672
+ + K L V+ G ENA
Sbjct: 1425 FDKASLKLGLDKAVLQSMSGRENA 1448
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 227 bits (578), Expect = 3e-59
Identities = 174/552 (31%), Positives = 261/552 (47%), Gaps = 107/552 (19%)
Query: 131 NRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNM 190
N LRDYQ EG +L + IL D+MGLGKT+Q ISFL+ + H+
Sbjct: 481 NLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQ----------- 529
Query: 191 PEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG-YFRVTVLHGNRKDNELIR 249
FLIV PLS L +W+ E + W V V G+ IR
Sbjct: 530 --------------HQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIR 575
Query: 250 --------VKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA 301
K+ K +TTYE L L S+ W+ + VDEAHR+KN + + + +
Sbjct: 576 EYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLID 635
Query: 302 LKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKREL 361
K N R+ +TGT LQN++KELW ++ + +P F + F + +HG+
Sbjct: 636 FKSNHRLLITGTPLQNSLKELWSLLHFIMP----EKFEFWEDFEE--DHGK--------- 680
Query: 362 ATGRK-AMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 420
GR+ Q L K + + LRR K ++ LP K ++++ ++ QK Y+ +L
Sbjct: 681 --GRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWIL----- 733
Query: 421 TLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTL-YLSYLTVLQKVANHVALLQAASTS 479
RN YK + G T +L+ + L+K NH L++ +
Sbjct: 734 -----------------TRN--YKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEEN 774
Query: 480 KQ---QETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRD 536
++ QE L+ I + SGK+ +L +LL R+ +
Sbjct: 775 ERENGQEILLSLI--------------------------RSSGKLILLDKLLTRLRERGN 808
Query: 537 KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC-LVSTM 595
+VL+FS ++LD+L +Y ++RLDGS K E R + + FN+ + C L+ST
Sbjct: 809 RVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTR 868
Query: 596 AGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLR 655
AGGLG+N A+ VV+FD WNP NDLQA RA+RIGQ + V + RL++ GTVEE + R
Sbjct: 869 AGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIER 928
Query: 656 QIYKQQLHCVVV 667
K L +V+
Sbjct: 929 AKKKMVLDHLVI 940
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 226 bits (576), Expect = 6e-59
Identities = 164/578 (28%), Positives = 269/578 (46%), Gaps = 95/578 (16%)
Query: 111 PSSSVAFKLSDNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVI 170
P S++ K+ + D Y LR+YQ EG +L ++ + CIL D+MGLGKT+Q I
Sbjct: 840 PPSNIWKKIDQSRD---YKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSI 896
Query: 171 SFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW 230
+FL E LL ++ FLI+APLS + NW+ E TW
Sbjct: 897 TFLY-----------------EILLTGIRGP---------FLIIAPLSTIANWEREFRTW 930
Query: 231 GYFRVTVLHGNRKDNELIRVKQR--------------KCEIALTTYETLRLCLDELNSLE 276
V V HG+ ++I+ + + + +TT+E + ELN++E
Sbjct: 931 TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
Query: 277 WSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGS 336
W VI+DEAHR+KN ++ E +K + ++ LTGT LQN ++EL+ ++ + P S
Sbjct: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPS 1050
Query: 337 GTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKED 396
+ F ++F D Q +Q+L + LRR K ++ +L KE+
Sbjct: 1051 ESTFMQEFGDLKTEEQ---------------VQKLQAILKPMMLRRLKEDVEKKLAPKEE 1095
Query: 397 RMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLY 456
++ LT+ QK Y+ +LE +N + + G+T
Sbjct: 1096 TIIEVELTNIQKKYYRAILE----------------------KNFSFLSKGAGQTNVPNL 1133
Query: 457 LSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPK 516
++ + L+K NH L++ A +++ F D + + F + +
Sbjct: 1134 VNTMMELRKCCNHPYLIKGAE-------------EKILGEFRDTYNPAA-SDFHLQAMIQ 1179
Query: 517 YSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLK 576
+GK+ ++ +LL + KVL+FS + LD+L+ Y + Y R+DG + R
Sbjct: 1180 SAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQA 1239
Query: 577 IVKEFNSTQ-DVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCR 635
+ F+ D + L+ T AGGLG+N A+ ++FD WNP NDLQA R +RIGQ +
Sbjct: 1240 AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNK 1299
Query: 636 DVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAK 673
VKV RL++ + E M+ R K L V+ S + +
Sbjct: 1300 AVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 225 bits (574), Expect = 1e-58
Identities = 168/536 (31%), Positives = 263/536 (49%), Gaps = 70/536 (13%)
Query: 130 INRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 189
+N L+ YQ +G +L Y + IL D+MGLGKT+Q I+ + ++ K N
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK------RIN 803
Query: 190 MPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGN---RKDNE 246
P FLI+ PLS L NW E D W V V + +
Sbjct: 804 GP-------------------FLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF 844
Query: 247 LIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-LKCN 305
+ +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 845 VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 904
Query: 306 VRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDP-VEHGQRHTATKRELATG 364
R+ LTGT LQN + ELW ++++ +P + S + F++ F+ P G++ + E
Sbjct: 905 RRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL- 963
Query: 365 RKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLIL 424
++RL K + + LRR K ++ QLP+K + ++ C ++ Q+ +Y+ ++ + V L
Sbjct: 964 --IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTD 1020
Query: 425 QSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET 484
S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 1021 GSEKDKKGKGG----------------TKTL-MNTIMQLRKICNHPYMFQHIEES----- 1058
Query: 485 LIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFS 544
FS F + L + SGK ++L ++L R KVLLF
Sbjct: 1059 ---------FSEHLGFT----GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQM 1105
Query: 545 TKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLGLNF 603
T L+ +++ Y G Y RLDG+TK+E+R ++K FN + I L+ST AGGLGLN
Sbjct: 1106 TSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNL 1165
Query: 604 VGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYK 659
A+ V++FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1166 QSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 225 bits (574), Expect = 1e-58
Identities = 168/536 (31%), Positives = 263/536 (49%), Gaps = 70/536 (13%)
Query: 130 INRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 189
+N L+ YQ +G +L Y + IL D+MGLGKT+Q I+ + ++ K N
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK------RIN 803
Query: 190 MPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGN---RKDNE 246
P FLI+ PLS L NW E D W V V + +
Sbjct: 804 GP-------------------FLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF 844
Query: 247 LIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-LKCN 305
+ +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 845 VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 904
Query: 306 VRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDP-VEHGQRHTATKRELATG 364
R+ LTGT LQN + ELW ++++ +P + S + F++ F+ P G++ + E
Sbjct: 905 RRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL- 963
Query: 365 RKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLIL 424
++RL K + + LRR K ++ QLP+K + ++ C ++ Q+ +Y+ ++ + V L
Sbjct: 964 --IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTD 1020
Query: 425 QSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET 484
S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 1021 GSEKDKKGKGG----------------TKTL-MNTIMQLRKICNHPYMFQHIEES----- 1058
Query: 485 LIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFS 544
FS F + L + SGK ++L ++L R KVLLF
Sbjct: 1059 ---------FSEHLGFT----GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQM 1105
Query: 545 TKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLGLNF 603
T L+ +++ Y G Y RLDG+TK+E+R ++K FN + I L+ST AGGLGLN
Sbjct: 1106 TSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNL 1165
Query: 604 VGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYK 659
A+ V++FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1166 QSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 225 bits (574), Expect = 1e-58
Identities = 168/536 (31%), Positives = 263/536 (49%), Gaps = 70/536 (13%)
Query: 130 INRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 189
+N L+ YQ +G +L Y + IL D+MGLGKT+Q I+ + ++ K N
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK------RIN 803
Query: 190 MPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGN---RKDNE 246
P FLI+ PLS L NW E D W V V + +
Sbjct: 804 GP-------------------FLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF 844
Query: 247 LIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-LKCN 305
+ +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 845 VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 904
Query: 306 VRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDP-VEHGQRHTATKRELATG 364
R+ LTGT LQN + ELW ++++ +P + S + F++ F+ P G++ + E
Sbjct: 905 RRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL- 963
Query: 365 RKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLIL 424
++RL K + + LRR K ++ QLP+K + ++ C ++ Q+ +Y+ ++ + V L
Sbjct: 964 --IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTD 1020
Query: 425 QSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET 484
S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 1021 GSEKDKKGKGG----------------TKTL-MNTIMQLRKICNHPYMFQHIEES----- 1058
Query: 485 LIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFS 544
FS F + L + SGK ++L ++L R KVLLF
Sbjct: 1059 ---------FSEHLGFT----GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQM 1105
Query: 545 TKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLGLNF 603
T L+ +++ Y G Y RLDG+TK+E+R ++K FN + I L+ST AGGLGLN
Sbjct: 1106 TSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNL 1165
Query: 604 VGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYK 659
A+ V++FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1166 QSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 225 bits (574), Expect = 1e-58
Identities = 168/536 (31%), Positives = 263/536 (49%), Gaps = 70/536 (13%)
Query: 130 INRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 189
+N L+ YQ +G +L Y + IL D+MGLGKT+Q I+ + ++ K N
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK------RIN 803
Query: 190 MPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGN---RKDNE 246
P FLI+ PLS L NW E D W V V + +
Sbjct: 804 GP-------------------FLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF 844
Query: 247 LIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-LKCN 305
+ +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 845 VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 904
Query: 306 VRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDP-VEHGQRHTATKRELATG 364
R+ LTGT LQN + ELW ++++ +P + S + F++ F+ P G++ + E
Sbjct: 905 RRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL- 963
Query: 365 RKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLIL 424
++RL K + + LRR K ++ QLP+K + ++ C ++ Q+ +Y+ ++ + V L
Sbjct: 964 --IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTD 1020
Query: 425 QSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET 484
S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 1021 GSEKDKKGKGG----------------TKTL-MNTIMQLRKICNHPYMFQHIEES----- 1058
Query: 485 LIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFS 544
FS F + L + SGK ++L ++L R KVLLF
Sbjct: 1059 ---------FSEHLGFT----GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQM 1105
Query: 545 TKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLGLNF 603
T L+ +++ Y G Y RLDG+TK+E+R ++K FN + I L+ST AGGLGLN
Sbjct: 1106 TSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNL 1165
Query: 604 VGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYK 659
A+ V++FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1166 QSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 225 bits (574), Expect = 1e-58
Identities = 168/536 (31%), Positives = 263/536 (49%), Gaps = 70/536 (13%)
Query: 130 INRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 189
+N L+ YQ +G +L Y + IL D+MGLGKT+Q I+ + ++ K N
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK------RIN 803
Query: 190 MPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGN---RKDNE 246
P FLI+ PLS L NW E D W V V + +
Sbjct: 804 GP-------------------FLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF 844
Query: 247 LIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-LKCN 305
+ +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 845 VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 904
Query: 306 VRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDP-VEHGQRHTATKRELATG 364
R+ LTGT LQN + ELW ++++ +P + S + F++ F+ P G++ + E
Sbjct: 905 RRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL- 963
Query: 365 RKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLIL 424
++RL K + + LRR K ++ QLP+K + ++ C ++ Q+ +Y+ ++ + V L
Sbjct: 964 --IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTD 1020
Query: 425 QSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET 484
S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 1021 GSEKDKKGKGG----------------TKTL-MNTIMQLRKICNHPYMFQHIEES----- 1058
Query: 485 LIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFS 544
FS F + L + SGK ++L ++L R KVLLF
Sbjct: 1059 ---------FSEHLGFT----GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQM 1105
Query: 545 TKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLGLNF 603
T L+ +++ Y G Y RLDG+TK+E+R ++K FN + I L+ST AGGLGLN
Sbjct: 1106 TSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNL 1165
Query: 604 VGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYK 659
A+ V++FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1166 QSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 225 bits (574), Expect = 1e-58
Identities = 168/536 (31%), Positives = 263/536 (49%), Gaps = 70/536 (13%)
Query: 130 INRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 189
+N L+ YQ +G +L Y + IL D+MGLGKT+Q I+ + ++ K N
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK------RIN 803
Query: 190 MPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGN---RKDNE 246
P FLI+ PLS L NW E D W V V + +
Sbjct: 804 GP-------------------FLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF 844
Query: 247 LIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-LKCN 305
+ +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 845 VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 904
Query: 306 VRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDP-VEHGQRHTATKRELATG 364
R+ LTGT LQN + ELW ++++ +P + S + F++ F+ P G++ + E
Sbjct: 905 RRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL- 963
Query: 365 RKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLIL 424
++RL K + + LRR K ++ QLP+K + ++ C ++ Q+ +Y+ ++ + V L
Sbjct: 964 --IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTD 1020
Query: 425 QSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET 484
S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 1021 GSEKDKKGKGG----------------TKTL-MNTIMQLRKICNHPYMFQHIEES----- 1058
Query: 485 LIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFS 544
FS F + L + SGK ++L ++L R KVLLF
Sbjct: 1059 ---------FSEHLGFT----GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQM 1105
Query: 545 TKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLGLNF 603
T L+ +++ Y G Y RLDG+TK+E+R ++K FN + I L+ST AGGLGLN
Sbjct: 1106 TSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNL 1165
Query: 604 VGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYK 659
A+ V++FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1166 QSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 225 bits (574), Expect = 1e-58
Identities = 168/536 (31%), Positives = 263/536 (49%), Gaps = 70/536 (13%)
Query: 130 INRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENN 189
+N L+ YQ +G +L Y + IL D+MGLGKT+Q I+ + ++ K N
Sbjct: 750 VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK------RIN 803
Query: 190 MPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGN---RKDNE 246
P FLI+ PLS L NW E D W V V + +
Sbjct: 804 GP-------------------FLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAF 844
Query: 247 LIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-LKCN 305
+ +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 845 VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAP 904
Query: 306 VRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDP-VEHGQRHTATKRELATG 364
R+ LTGT LQN + ELW ++++ +P + S + F++ F+ P G++ + E
Sbjct: 905 RRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETIL- 963
Query: 365 RKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLIL 424
++RL K + + LRR K ++ QLP+K + ++ C ++ Q+ +Y+ ++ + V L
Sbjct: 964 --IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRH-MQAKGVLLTD 1020
Query: 425 QSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET 484
S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 1021 GSEKDKKGKGG----------------TKTL-MNTIMQLRKICNHPYMFQHIEES----- 1058
Query: 485 LIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFS 544
FS F + L + SGK ++L ++L R KVLLF
Sbjct: 1059 ---------FSEHLGFT----GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQM 1105
Query: 545 TKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLGLNF 603
T L+ +++ Y G Y RLDG+TK+E+R ++K FN + I L+ST AGGLGLN
Sbjct: 1106 TSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNL 1165
Query: 604 VGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYK 659
A+ V++FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1166 QSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 225 bits (574), Expect = 1e-58
Identities = 165/568 (29%), Positives = 262/568 (46%), Gaps = 92/568 (16%)
Query: 128 YTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIE 187
Y + LR+YQ EG +L ++ + CIL D+MGLGKT+Q I+FL+
Sbjct: 455 YKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS------------- 501
Query: 188 NNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNEL 247
E LR + FLI+APLS + NW+ E TW V HG++ ++
Sbjct: 502 ----EIFLRGIHGP---------FLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQM 548
Query: 248 IRVKQR--------------KCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKA 293
I+ + K + +TT+E + EL + WS VI+DEAHR+KN
Sbjct: 549 IQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNC 608
Query: 294 RVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQR 353
++ E +K + ++ LTGT LQN+++EL+ ++++ P S T F ++F D
Sbjct: 609 KLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD------- 661
Query: 354 HTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQT 413
T+ ++ K +Q + K M LRR K ++ L K++ ++ LT+ QK Y+
Sbjct: 662 -LKTEEQV----KKLQSILKPM---MLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRA 713
Query: 414 VLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473
+LE +N + T + ++ + L+K NH L+
Sbjct: 714 ILE----------------------KNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
Query: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRK 533
A +E +++ PDF ++ A +GK+ ++ +LL
Sbjct: 752 NGA-----EEKILEDFRKTHSPDAPDFQLQAMIQA---------AGKLVLIDKLLPKLIA 797
Query: 534 NRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEF-NSTQDVNICLV 592
KVL+FS + LD+L+ Y + Y R+DG + R + F D + L+
Sbjct: 798 GGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLL 857
Query: 593 STMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652
T AGGLG+N A+ ++FD WNP NDLQA R +RIGQ + VKV RLI+ + E M
Sbjct: 858 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 917
Query: 653 YLRQIYKQQLHCVVVGSENAKRYFEAVQ 680
+ + K L V+ N K VQ
Sbjct: 918 FDKASLKLGLDKAVLQDINRKGGTNGVQ 945
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 224 bits (572), Expect = 2e-58
Identities = 187/636 (29%), Positives = 299/636 (47%), Gaps = 85/636 (13%)
Query: 72 ERKIPLKQLQEVKFVKDCPRNLIFDDEDLEKPYFPNRKFPSS----SVAFKLSDNGDS-I 126
E KI L E KD + + +D++ Y S +VA +S+ +
Sbjct: 657 EEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQS 716
Query: 127 PYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDI 186
IN L+ YQ +G ++ Y + IL D+MGLGKT+Q I+ + ++ K
Sbjct: 717 ALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRL---- 772
Query: 187 ENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNR---K 243
N P +LI+ PLS L NW E D W V + + +
Sbjct: 773 --NGP-------------------YLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
Query: 244 DNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-L 302
+ + +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 812 RSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 871
Query: 303 KCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH-GQRHTATKREL 361
RI LTGT LQN + ELW ++++ +P + S + F++ F+ P G+R + E
Sbjct: 872 VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET 931
Query: 362 ATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVT 421
++RL K + + LRR K ++ QLP+K + ++ C ++ QK +Y+ ++ + +
Sbjct: 932 IL---IIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGIL 987
Query: 422 LILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQ 481
L S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 988 LTDGSEKDKKGKGG----------------AKTL-MNTIMQLRKICNHPYMFQHIEES-- 1028
Query: 482 QETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLF 541
F + + S + + SGK ++L ++L R +VLLF
Sbjct: 1029 ---------------FAEHLGYS-NGVINGAELYRASGKFELLDRILPKLRATNHRVLLF 1072
Query: 542 SFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLG 600
T L+ +++ Y Y RLDG+TKSE+R ++K+FN I L+ST AGGLG
Sbjct: 1073 CQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLG 1132
Query: 601 LNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQ 660
LN A+ VV+FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1133 LNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1192
Query: 661 QLHCVVV--------GSENAKRYFEAVQGSKEHQGE 688
+ V+ S + +R F +Q EH+ E
Sbjct: 1193 NVDQKVIQAGMFDQKSSSHERRAF--LQAILEHEEE 1226
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 224 bits (572), Expect = 2e-58
Identities = 187/636 (29%), Positives = 299/636 (47%), Gaps = 85/636 (13%)
Query: 72 ERKIPLKQLQEVKFVKDCPRNLIFDDEDLEKPYFPNRKFPSS----SVAFKLSDNGDS-I 126
E KI L E KD + + +D++ Y S +VA +S+ +
Sbjct: 657 EEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQS 716
Query: 127 PYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDI 186
IN L+ YQ +G ++ Y + IL D+MGLGKT+Q I+ + ++ K
Sbjct: 717 ALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRL---- 772
Query: 187 ENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNR---K 243
N P +LI+ PLS L NW E D W V + + +
Sbjct: 773 --NGP-------------------YLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMR 811
Query: 244 DNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKA-L 302
+ + +++ K + LTTYE + L + W +IVDE HR+KN ++T+V+
Sbjct: 812 RSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 871
Query: 303 KCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH-GQRHTATKREL 361
RI LTGT LQN + ELW ++++ +P + S + F++ F+ P G+R + E
Sbjct: 872 VAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEET 931
Query: 362 ATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVT 421
++RL K + + LRR K ++ QLP+K + ++ C ++ QK +Y+ ++ + +
Sbjct: 932 IL---IIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRH-MQAKGIL 987
Query: 422 LILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQ 481
L S + + G KTL ++ + L+K+ NH + Q S
Sbjct: 988 LTDGSEKDKKGKGG----------------AKTL-MNTIMQLRKICNHPYMFQHIEES-- 1028
Query: 482 QETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLF 541
F + + S + + SGK ++L ++L R +VLLF
Sbjct: 1029 ---------------FAEHLGYS-NGVINGAELYRASGKFELLDRILPKLRATNHRVLLF 1072
Query: 542 SFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNST-QDVNICLVSTMAGGLG 600
T L+ +++ Y Y RLDG+TKSE+R ++K+FN I L+ST AGGLG
Sbjct: 1073 CQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLG 1132
Query: 601 LNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQ 660
LN A+ VV+FD WNP DLQA DRA+RIGQ +V+VLRL ++ +VEE + YK
Sbjct: 1133 LNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1192
Query: 661 QLHCVVV--------GSENAKRYFEAVQGSKEHQGE 688
+ V+ S + +R F +Q EH+ E
Sbjct: 1193 NVDQKVIQAGMFDQKSSSHERRAF--LQAILEHEEE 1226
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 224 bits (571), Expect = 2e-58
Identities = 172/546 (31%), Positives = 263/546 (48%), Gaps = 107/546 (19%)
Query: 133 YLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVIS---FLAAVLHKKGTREDIENN 189
+LR YQ EG +L + GCILGD+MGLGKT Q I+ +LA L+ +G
Sbjct: 45 HLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGP------- 97
Query: 190 MPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNELIR 249
FLI+ PLSVL NWK+E+ + V + K+
Sbjct: 98 ---------------------FLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACL 136
Query: 250 VKQRKCE----IALTTYETLRLCLDE---LNSLEWSAVIVDEAHRIKNPKARVTEVMKAL 302
+ K E + LTTYE +CL + L S WS ++VDEAHR+KN + + + +
Sbjct: 137 QQDLKQESRFHVLLTTYE---ICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEF 193
Query: 303 KCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELA 362
+ LTGT +QN+++EL+ ++ + P L + K++ D + QR+ ++E
Sbjct: 194 SVVFSLLLTGTPIQNSLQELYSLLSFVEPDL-----FSKEEVGDFI---QRYQDIEKE-- 243
Query: 363 TGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTL 422
++ L K + + LRR K + +LPKK + ++Y ++ QK Y+ +L +
Sbjct: 244 --SESASELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKD---- 297
Query: 423 ILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYL-SYLTVLQKVANHVALLQAASTSKQ 481
L + E ET K + L + L+ L+K +H L
Sbjct: 298 -LDAFE--------------------NETAKKVKLQNILSQLRKCVDHPYLF-------- 328
Query: 482 QETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLF 541
D V+ + L++ SGK+ +L +LL +VLLF
Sbjct: 329 -----------------DGVEPEPFEVGDHLTEA--SGKLHLLDKLLAFLYSGGHRVLLF 369
Query: 542 SFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGL 601
S T++LD+LQ Y G Y R+DGS + EER +K F Q + + L+ST AGG+G+
Sbjct: 370 SQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQ-QPIFVFLLSTRAGGVGM 428
Query: 602 NFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQ 661
N A+ V+ D +NP NDLQA RA+RIGQ + VKV+RLI TVEEI+Y + K Q
Sbjct: 429 NLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQ 488
Query: 662 LHCVVV 667
L +++
Sbjct: 489 LTNMII 494
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 219 bits (558), Expect = 7e-57
Identities = 157/561 (27%), Positives = 252/561 (44%), Gaps = 92/561 (16%)
Query: 128 YTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIE 187
Y LR+YQ EG +L ++ + CIL D+MGLGKT+Q I+FL V + +
Sbjct: 526 YKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-------VG 578
Query: 188 NNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNEL 247
+ P FL++APLS + NW+ E +TW V HG+ ++
Sbjct: 579 IHGP-------------------FLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQM 619
Query: 248 IRVKQRKC--------------EIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKA 293
I+ + C + +TT+E + EL +EW VI+DEAHR+KN
Sbjct: 620 IQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNC 679
Query: 294 RVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQR 353
++ + +K + ++ LTGT LQN ++EL+ ++ + P S + F K F D Q
Sbjct: 680 KLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQ- 738
Query: 354 HTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQT 413
+Q+L + LRR K ++ L K++ ++ LT+ QK Y+
Sbjct: 739 --------------VQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRA 784
Query: 414 VLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALL 473
+LE +N + + G T L+ + L+K NH L+
Sbjct: 785 ILE----------------------KNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 822
Query: 474 QAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRK 533
A E + C + F + + +GK+ ++ +LL +
Sbjct: 823 NGAEEKILTE--FREACHII------------PHDFHLQAMVRSAGKLVLIDKLLPKLKA 868
Query: 534 NRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQ-DVNICLV 592
KVL+FS + LD+L+ Y + Y R+DG + R + F+ D + L+
Sbjct: 869 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLL 928
Query: 593 STMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652
T AGGLG+N A+ ++FD WNP NDLQA R +RIGQ + VKV RLI+ + E M
Sbjct: 929 CTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREM 988
Query: 653 YLRQIYKQQLHCVVVGSENAK 673
+ + K L V+ S + +
Sbjct: 989 FDKASLKLGLDKAVLQSMSGR 1009
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 219 bits (557), Expect = 9e-57
Identities = 171/604 (28%), Positives = 270/604 (44%), Gaps = 119/604 (19%)
Query: 134 LRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 193
L YQ EG +L + G IL D+MGLGKT+Q I FL + L+K+G
Sbjct: 736 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYS-LYKEGH----------- 783
Query: 194 LLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG---------------------- 231
K FL+ APLS + NW+ E W
Sbjct: 784 -------------TKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830
Query: 232 -YFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKN 290
F + G +K ++ R Q K + LT+YE + + L S+ W+ ++VDEAHR+KN
Sbjct: 831 FSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKN 890
Query: 291 PKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH 350
+++ V+ K + ++ LTGT LQNN++EL+ ++++ P + F ++F+D +
Sbjct: 891 NQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE 950
Query: 351 GQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAV 410
Q +++L + LRR K + +P K + +V L+ QK
Sbjct: 951 DQ---------------IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995
Query: 411 YQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHV 470
Y+ +L L NS G + L+ + L+K NH
Sbjct: 996 YKYILTRNFEAL-----------------------NSRGGGNQVSLLNIMMDLKKCCNHP 1032
Query: 471 ALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNH 530
L A+ K A+E + K SGK+ +LQ++L
Sbjct: 1033 YLFPVAAMES---------------------PKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
Query: 531 CRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC 590
++ +VL+FS TK+LD+L+ + G Y R+DG R + + FN+ C
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 591 -LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVE 649
L+ST AGGLG+N A+ V++FD WNP ND+QA RA+RIGQ V + R ++ +VE
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 650 EIMYLRQIYKQQL---HCVVVGSENAKRYFEAVQGSKEHQGEL--FGIHNLFKFRSQGSC 704
E + Q+ K+++ H VV +K A SK+ ++ FG LFK ++G
Sbjct: 1192 E--RITQVAKRKMMLTHLVVRPGLGSK----AGSMSKQELDDILKFGTEELFKDENEGEN 1245
Query: 705 LTKD 708
+D
Sbjct: 1246 KEED 1249
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 219 bits (557), Expect = 9e-57
Identities = 171/604 (28%), Positives = 270/604 (44%), Gaps = 119/604 (19%)
Query: 134 LRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 193
L YQ EG +L + G IL D+MGLGKT+Q I FL + L+K+G
Sbjct: 736 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYS-LYKEGH----------- 783
Query: 194 LLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG---------------------- 231
K FL+ APLS + NW+ E W
Sbjct: 784 -------------TKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830
Query: 232 -YFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKN 290
F + G +K ++ R Q K + LT+YE + + L S+ W+ ++VDEAHR+KN
Sbjct: 831 FSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKN 890
Query: 291 PKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH 350
+++ V+ K + ++ LTGT LQNN++EL+ ++++ P + F ++F+D +
Sbjct: 891 NQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE 950
Query: 351 GQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAV 410
Q +++L + LRR K + +P K + +V L+ QK
Sbjct: 951 DQ---------------IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995
Query: 411 YQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHV 470
Y+ +L L NS G + L+ + L+K NH
Sbjct: 996 YKYILTRNFEAL-----------------------NSRGGGNQVSLLNIMMDLKKCCNHP 1032
Query: 471 ALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNH 530
L A+ K A+E + K SGK+ +LQ++L
Sbjct: 1033 YLFPVAAMES---------------------PKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
Query: 531 CRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC 590
++ +VL+FS TK+LD+L+ + G Y R+DG R + + FN+ C
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 591 -LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVE 649
L+ST AGGLG+N A+ V++FD WNP ND+QA RA+RIGQ V + R ++ +VE
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 650 EIMYLRQIYKQQL---HCVVVGSENAKRYFEAVQGSKEHQGEL--FGIHNLFKFRSQGSC 704
E + Q+ K+++ H VV +K A SK+ ++ FG LFK ++G
Sbjct: 1192 E--RITQVAKRKMMLTHLVVRPGLGSK----AGSMSKQELDDILKFGTEELFKDENEGEN 1245
Query: 705 LTKD 708
+D
Sbjct: 1246 KEED 1249
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 219 bits (557), Expect = 9e-57
Identities = 171/604 (28%), Positives = 270/604 (44%), Gaps = 119/604 (19%)
Query: 134 LRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEF 193
L YQ EG +L + G IL D+MGLGKT+Q I FL + L+K+G
Sbjct: 795 LHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYS-LYKEGH----------- 842
Query: 194 LLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG---------------------- 231
K FL+ APLS + NW+ E W
Sbjct: 843 -------------TKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 889
Query: 232 -YFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKN 290
F + G +K ++ R Q K + LT+YE + + L S+ W+ ++VDEAHR+KN
Sbjct: 890 FSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKN 949
Query: 291 PKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEH 350
+++ V+ K + ++ LTGT LQNN++EL+ ++++ P + F ++F+D +
Sbjct: 950 NQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE 1009
Query: 351 GQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAV 410
Q +++L + LRR K + +P K + +V L+ QK
Sbjct: 1010 DQ---------------IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 1054
Query: 411 YQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHV 470
Y+ +L L NS G + L+ + L+K NH
Sbjct: 1055 YKYILTRNFEAL-----------------------NSRGGGNQVSLLNIMMDLKKCCNHP 1091
Query: 471 ALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNH 530
L A+ K A+E + K SGK+ +LQ++L
Sbjct: 1092 YLFPVAAMES---------------------PKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
Query: 531 CRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC 590
++ +VL+FS TK+LD+L+ + G Y R+DG R + + FN+ C
Sbjct: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
Query: 591 -LVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVE 649
L+ST AGGLG+N A+ V++FD WNP ND+QA RA+RIGQ V + R ++ +VE
Sbjct: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
Query: 650 EIMYLRQIYKQQL---HCVVVGSENAKRYFEAVQGSKEHQGEL--FGIHNLFKFRSQGSC 704
E + Q+ K+++ H VV +K A SK+ ++ FG LFK ++G
Sbjct: 1251 E--RITQVAKRKMMLTHLVVRPGLGSK----AGSMSKQELDDILKFGTEELFKDENEGEN 1304
Query: 705 LTKD 708
+D
Sbjct: 1305 KEED 1308
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 215 bits (548), Expect = 1e-55
Identities = 179/641 (27%), Positives = 289/641 (45%), Gaps = 136/641 (21%)
Query: 97 DEDLEKPYFPNRKFPSSSVAFKLSDNGDSIPYTINRY---LRDYQREGTRFLYGHYIHGG 153
D+ EKP P+ +V F D P+ I+ L YQ EG +L + G
Sbjct: 668 DDKQEKP--PDTPIVDPTVKF------DKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGT 719
Query: 154 GCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLI 213
IL D+MGLGKTVQ I FL + L+K+G +K +L+
Sbjct: 720 DTILADEMGLGKTVQTIVFLYS-LYKEGH------------------------SKGPYLV 754
Query: 214 VAPLSVLYNWKDELDTWGY-FRVTVLHGNRKDNELIRVK--------------------- 251
APLS + NW+ E + W F V G+++ +IR
Sbjct: 755 SAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKE 814
Query: 252 -QRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGL 310
Q K + LT+YE + + L S+EW+ ++VDEAHR+KN +++ V+ + K + ++ L
Sbjct: 815 VQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874
Query: 311 TGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQR 370
TGT LQNN++EL+ ++++ P + F ++F+D + Q +++
Sbjct: 875 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQ---------------IKK 919
Query: 371 LAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPC 430
L + LRR K + +P K + +V L+ QK Y+ +L L
Sbjct: 920 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEAL-------- 971
Query: 431 TCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRIC 490
NS G + L+ + L+K NH L A+
Sbjct: 972 ---------------NSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE----------- 1005
Query: 491 DQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDV 550
+ +++ S K SGK+ +LQ++L R +VL+FS TK+LD+
Sbjct: 1006 ----------APVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDL 1055
Query: 551 LQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNIC-LVSTMAGGLGLNFVGANVV 609
L+ + G Y R+DG R + + FN+ C L+ST AGGLG+N A+ V
Sbjct: 1056 LEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTV 1115
Query: 610 VLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQL---HCVV 666
+++D WNP ND+QA RA+RIGQ + V + R ++ +VEE + Q+ K+++ H VV
Sbjct: 1116 IIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEE--RITQVAKRKMMLTHLVV 1173
Query: 667 ---VGSENAKRYFEAVQGSKEHQGEL--FGIHNLFKFRSQG 702
+GS++ +K+ ++ FG LFK +G
Sbjct: 1174 RPGLGSKSGSM-------TKQELDDILKFGTEELFKDDVEG 1207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,017,626
Number of Sequences: 37866
Number of extensions: 1220310
Number of successful extensions: 4120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3810
Number of HSP's gapped (non-prelim): 150
length of query: 712
length of database: 18,247,518
effective HSP length: 109
effective length of query: 603
effective length of database: 14,120,124
effective search space: 8514434772
effective search space used: 8514434772
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.