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Search of human proteins with 5803040
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo
sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo ... 449 e-127
gi|19923442 transmembrane emp24 protein transport domain contain... 241 5e-64
gi|32996709 transmembrane emp24 protein transport domain contain... 106 1e-23
gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens] 100 1e-21
gi|5803149 coated vesicle membrane protein [Homo sapiens] 75 5e-14
gi|21389573 transmembrane emp24 protein transport domain contain... 60 1e-09
gi|33457308 transmembrane emp24 protein transport domain contain... 47 1e-05
gi|39725636 transmembrane emp24 protein transport domain contain... 47 2e-05
gi|98986464 transmembrane emp24 domain-containing protein 10 pre... 45 5e-05
gi|219521893 coiled-coil transcriptional coactivator isoform 2 [... 32 0.45
gi|212549536 regulator of G-protein signaling like 1 [Homo sapiens] 31 0.99
gi|162809334 pregnancy-zone protein [Homo sapiens] 30 1.3
gi|22758136 MAP7 domain containing 2 [Homo sapiens] 30 1.7
gi|157671919 hypothetical protein LOC374864 isoform 1 [Homo sapi... 30 2.2
gi|157671917 hypothetical protein LOC374864 isoform 2 [Homo sapi... 30 2.2
gi|12597655 centromere protein H [Homo sapiens] 29 2.9
gi|85067499 arachidonate 15-lipoxygenase, second type isoform a ... 29 2.9
gi|85067501 arachidonate 15-lipoxygenase, second type isoform d ... 29 2.9
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 28 4.9
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 28 6.4
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 28 6.4
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 28 6.4
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 28 6.4
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 28 6.4
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 28 6.4
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 28 6.4
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 28 6.4
gi|4557325 apolipoprotein E precursor [Homo sapiens] 28 8.4
gi|27923592 SEC14-like 3 [Homo sapiens] 28 8.4
gi|38044112 restin isoform b [Homo sapiens] 28 8.4
>gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo
sapiens]
Length = 227
Score = 449 bits (1156), Expect = e-127
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MMAAGAALALALWLLMPPVEVGGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEY 60
MMAAGAALALALWLLMPPVEVGGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEY
Sbjct: 1 MMAAGAALALALWLLMPPVEVGGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEY 60
Query: 61 QVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVF 120
QVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVF
Sbjct: 61 QVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVF 120
Query: 121 FELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEA 180
FELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEA
Sbjct: 121 FELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEA 180
Query: 181 RDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT 227
RDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT
Sbjct: 181 RDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT 227
>gi|19923442 transmembrane emp24 protein transport domain containing
5 [Homo sapiens]
Length = 229
Score = 241 bits (614), Expect = 5e-64
Identities = 121/210 (57%), Positives = 158/210 (75%), Gaps = 3/210 (1%)
Query: 16 MPPVEV-GGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTL 74
+PPV + G AG P D +FTF LPAG+K+CFYQ P ASLE EYQV+ GAGLD+DF L
Sbjct: 17 LPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHL 76
Query: 75 ESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSL-QDDEE 133
SP+G LV E RK+DGVHTVE TE GDY CFDN+FSTISEK++FFELI D++ + +E
Sbjct: 77 ASPEGKTLVFEQRKSDGVHTVE-TEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQE 135
Query: 134 VEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERV 193
E W + + ++LD+K+EDI ESI ++++RL +S + LLRAFEARDRN+QE N +RV
Sbjct: 136 QEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQILLRAFEARDRNIQESNFDRV 195
Query: 194 NFWSAVNVAVLLLVAVLQVCTLKRFFQDKR 223
NFWS VN+ V+++V+ +QV LK F+DKR
Sbjct: 196 NFWSMVNLVVMVVVSAIQVYMLKSLFEDKR 225
>gi|32996709 transmembrane emp24 protein transport domain containing
7 [Homo sapiens]
Length = 224
Score = 106 bits (265), Expect = 1e-23
Identities = 75/218 (34%), Positives = 100/218 (45%), Gaps = 19/218 (8%)
Query: 10 LALWLLMPPVEVGGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLD 69
LAL LL+P GGA E TF LP KQCFY+ E+QVI G D
Sbjct: 22 LALLLLVPGP--GGAS-------EITFELPDNAKQCFYEDIAQGTKCTLEFQVITGGHYD 72
Query: 70 VDFTLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQ 129
VD LE P G +L E +K T ++ G YK CF N FST + K V+F+
Sbjct: 73 VDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDF------ 126
Query: 130 DDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGN 189
G + P E + ++ + ++ L+ I T R EA+ R+ E
Sbjct: 127 ----QVGEDPPLFPSENRVSALTQMESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDL 182
Query: 190 LERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT 227
RV +WS +LL+V++ QV LK FF DKR T
Sbjct: 183 NTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKRTTTT 220
>gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]
Length = 217
Score = 100 bits (248), Expect = 1e-21
Identities = 64/193 (33%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Query: 33 EFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGV 92
E TF LP KQCF++ +YQVI G DVD +E PQG + E++K
Sbjct: 28 ELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPQGNTIYRETKKQYDS 87
Query: 93 HTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKME 152
T G Y+ CF N FST S K V+F+ F + + V ++
Sbjct: 88 FTYRAEVKGVYQFCFSNEFSTFSHKTVYFD--FQVGDEPPILPDMGNRVTALTQMESACV 145
Query: 153 DIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQV 212
I E+++T+ I T R EA+DR E RV++WS L +V+ QV
Sbjct: 146 TIHEALKTV-------IDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQV 198
Query: 213 CTLKRFFQDKRPV 225
LK FF +KRP+
Sbjct: 199 LLLKSFFTEKRPI 211
>gi|5803149 coated vesicle membrane protein [Homo sapiens]
Length = 201
Score = 75.1 bits (183), Expect = 5e-14
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 38 LPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEP 97
+ A ++CF++ + + ++V G LD+D + P + R++ G +T
Sbjct: 25 IDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAA 84
Query: 98 TEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLD---VKMEDI 154
G YK CF N ST++ K+V F + +++E A + EEM++ V M +
Sbjct: 85 HMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAV 144
Query: 155 KESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCT 214
K E M R E R + + RV WS VL+ + + Q+
Sbjct: 145 KHEQEYMEVR--------------ERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYY 190
Query: 215 LKRFFQDKRPV 225
LKRFF+ +R V
Sbjct: 191 LKRFFEVRRVV 201
>gi|21389573 transmembrane emp24 protein transport domain containing
6 [Homo sapiens]
Length = 240
Score = 60.5 bits (145), Expect = 1e-09
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 22/217 (10%)
Query: 21 VGGAGPPPIQDG----EFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVD----F 72
+ G+G P+ G +F ++P G +CF+Q A +V G+ D
Sbjct: 27 LSGSGDQPLFRGADRYDFAIMIPPGGTECFWQFAHQTGYFYFSCEVQRTVGMSHDRHVAA 86
Query: 73 TLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVF--FELIFDSLQD 130
T +PQG L+ S+ G E G Y+LC N + V+ F + ++ +
Sbjct: 87 TAHNPQG-FLIDTSQGVRGQINFSTQETGFYQLCLSNQHNHFGSVQVYLNFGVFYEGPET 145
Query: 131 DEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNL 190
D + + + L+ ++ I++ + ++ + + R + D L + N
Sbjct: 146 DHKQK-------ERKQLNDTLDAIEDGTQKVQNNIFHMWRYYNFARMRKMADFFLIQSNY 198
Query: 191 ERVNFWSAVNVAVLLLVAVLQVCTLKRFFQDKRPVPT 227
VN+WS V++L +LQ+ LKR F VPT
Sbjct: 199 NYVNWWSTAQSLVIILSGILQLYFLKRLFN----VPT 231
>gi|33457308 transmembrane emp24 protein transport domain containing
4 [Homo sapiens]
Length = 227
Score = 47.0 bits (110), Expect = 1e-05
Identities = 40/198 (20%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 43 KQCFYQSAPANASLETEYQ-----------VIGGAGLDVDFTLESPQGVLLVSESRKADG 91
K+CF + P + Y+ + GL + ++ P G +++S ++G
Sbjct: 39 KRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVVLSRQYGSEG 98
Query: 92 VHTVEPTEAGDYKLCFDNSFSTISEKLVFFE----LIFDSLQDDEEVEGWAEAVEPEEML 147
T GD+++C ++ S ++ F + +Q E + E +++
Sbjct: 99 RFTFTSHTPGDHQICLHSN----STRMALFAGGKLRVHLDIQVGEHANNYPEIAAKDKLT 154
Query: 148 DVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLV 207
++++ + + + + E+ Q R E R R E +RV +WS +L+L
Sbjct: 155 ELQLRARQLLDQVEQIQKEQDYQ-----RYREERFRLTSESTNQRVLWWSIAQTVILILT 209
Query: 208 AVLQVCTLKRFFQDKRPV 225
+ Q+ LK FF+ K+ V
Sbjct: 210 GIWQMRHLKSFFEAKKLV 227
>gi|39725636 transmembrane emp24 protein transport domain containing
9 [Homo sapiens]
Length = 235
Score = 46.6 bits (109), Expect = 2e-05
Identities = 42/197 (21%), Positives = 86/197 (43%), Gaps = 22/197 (11%)
Query: 43 KQCFYQSAPANASL------------ETEYQVIGGAGLDVDFTLESPQGVLLVSESRKAD 90
K+CF + P + EYQ GL + ++ P+ ++++ ++
Sbjct: 47 KKCFIEEIPDETMVIGNYRTQLYDKQREEYQP-ATPGLGMFVEVKDPEDKVILARQYGSE 105
Query: 91 GVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEM--LD 148
G T G++++C ++ + S + +Q E +AE +++ L
Sbjct: 106 GRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQ 165
Query: 149 VKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVA 208
+++ + E +E ++ E++ Q R E R R E +RV +WS + +L+ +
Sbjct: 166 LRVRQLVEQVEQIQK--EQNYQ-----RWREERFRQTSESTNQRVLWWSILQTLILVAIG 218
Query: 209 VLQVCTLKRFFQDKRPV 225
V Q+ LK FF+ K+ V
Sbjct: 219 VWQMRHLKSFFEAKKLV 235
>gi|98986464 transmembrane emp24 domain-containing protein 10
precursor [Homo sapiens]
Length = 219
Score = 45.1 bits (105), Expect = 5e-05
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 35 TFLLPAGRKQCFYQSAPANASLETEYQVI----GGAGLDVDFTLESPQGVLLVSESRKAD 90
+F LP ++C + + + Y++ G GL + G +L S+
Sbjct: 33 SFHLPINSRKCLREEIHKDLLVTGAYEISDQSGGAGGLRSHLKITDSAGHILYSKEDATK 92
Query: 91 GVHTVEPTEAGDYKLCFDNSFS-TISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDV 149
G + +++CF++ + I ++LV ++ + E E ++P E+
Sbjct: 93 GKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELR 152
Query: 150 KMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAV 209
++ED+ ESI +++ R E RD N E RV ++S ++ L+ +A
Sbjct: 153 RLEDLSESIVNDFAYMKK--------REEEMRDTN--ESTNTRVLYFSIFSMFCLIGLAT 202
Query: 210 LQVCTLKRFFQDKR 223
QV L+RFF+ K+
Sbjct: 203 WQVFYLRRFFKAKK 216
>gi|219521893 coiled-coil transcriptional coactivator isoform 2
[Homo sapiens]
Length = 606
Score = 32.0 bits (71), Expect = 0.45
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 108 DNSFSTISEKLVFFELIFDSLQD--------DEEVEGWAEAVEPE-EMLDVKMEDIKESI 158
++ TISEK++ E+ D L+D E++ G + V+ + E + ++E +KE +
Sbjct: 201 EDDIQTISEKVLTKEVELDRLRDTVKALTREQEKLLGQLKEVQADKEQSEAELEPLKEQL 260
Query: 159 ETMRTRLERSIQMLTLL-----RAFEARDRNLQEGNLERV 193
+ S Q TLL A ARDR + E + R+
Sbjct: 261 RGAQELAASSQQKATLLGEELASAAAARDRTIAELHRSRL 300
>gi|212549536 regulator of G-protein signaling like 1 [Homo sapiens]
Length = 1076
Score = 30.8 bits (68), Expect = 0.99
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 111 FSTISEKLVFFELIFDS-------LQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRT 163
F T K+ F EL + + + DD ++ E +D KME IKE+ R+
Sbjct: 570 FLTDITKMSFEELCYKNPKMAIQKISDDYKIY-----CEKAPKIDFKMEIIKETKTVSRS 624
Query: 164 RLERSIQMLTLLRAFEARDRNLQE 187
+ S+ TL+R R RNL E
Sbjct: 625 NRKMSLLKRTLVRKPSMRPRNLTE 648
>gi|162809334 pregnancy-zone protein [Homo sapiens]
Length = 1482
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 91 GVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVK 150
G HT+ P E+GD K F SF S+ + ++ D EV G +E E E L K
Sbjct: 505 GTHTL-PVESGDMKGSFALSFPVESDVAPIARMFIFAILPDGEVVGDSEKFEIENCLANK 563
Query: 151 ME 152
++
Sbjct: 564 VD 565
>gi|22758136 MAP7 domain containing 2 [Homo sapiens]
Length = 732
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 128 LQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARDRNLQE 187
LQ ++E + E VE EE ++ E++K E R RLE + R + ++ QE
Sbjct: 413 LQKEQEEQ---ERVEKEEQDRLEREELKRKAEEERLRLEEEARKQEEERKRQEEEKKKQE 469
Query: 188 GNLER 192
G +R
Sbjct: 470 GEEKR 474
>gi|157671919 hypothetical protein LOC374864 isoform 1 [Homo
sapiens]
Length = 867
Score = 29.6 bits (65), Expect = 2.2
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 112 STISEKLVFFELIFDS---------LQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMR 162
S I E L FE F+ L++D V + V+P E D K ++K+ +ET+
Sbjct: 108 SKIQEHLKRFETSFEEWSRTSSTKDLKEDWSVTTPVKEVKPGEKRDEKCPELKQEMETLL 167
Query: 163 TRLERSIQMLTLLRA 177
+ R I+ L RA
Sbjct: 168 SEAIRLIKSLETDRA 182
>gi|157671917 hypothetical protein LOC374864 isoform 2 [Homo
sapiens]
Length = 829
Score = 29.6 bits (65), Expect = 2.2
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 112 STISEKLVFFELIFDS---------LQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMR 162
S I E L FE F+ L++D V + V+P E D K ++K+ +ET+
Sbjct: 108 SKIQEHLKRFETSFEEWSRTSSTKDLKEDWSVTTPVKEVKPGEKRDEKCPELKQEMETLL 167
Query: 163 TRLERSIQMLTLLRA 177
+ R I+ L RA
Sbjct: 168 SEAIRLIKSLETDRA 182
>gi|12597655 centromere protein H [Homo sapiens]
Length = 247
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 123 LIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLRAFEARD 182
L + S+ D E E E + E+ ++ K+ED++ IE ++ E L +R A
Sbjct: 55 LEYKSMVDASE-EKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALK 113
Query: 183 RNLQE 187
+NL++
Sbjct: 114 KNLEK 118
>gi|85067499 arachidonate 15-lipoxygenase, second type isoform a
[Homo sapiens]
Length = 647
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 114 ISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLT 173
+SE + + +S+QDD E++ W + + L+ + I S+ET E +Q +T
Sbjct: 459 VSEIIGIYYPSDESVQDDRELQAWVREIFSKGFLNQESSGIPSSLETR----EALVQYVT 514
Query: 174 LL 175
++
Sbjct: 515 MV 516
>gi|85067501 arachidonate 15-lipoxygenase, second type isoform d
[Homo sapiens]
Length = 676
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 114 ISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLT 173
+SE + + +S+QDD E++ W + + L+ + I S+ET E +Q +T
Sbjct: 488 VSEIIGIYYPSDESVQDDRELQAWVREIFSKGFLNQESSGIPSSLETR----EALVQYVT 543
Query: 174 LL 175
++
Sbjct: 544 MV 545
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapiens]
Length = 1478
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 101 GDYKLCFDNSFSTISEKLVFFELIFD 126
G Y L FDN+FS K VF+ L D
Sbjct: 1442 GIYMLIFDNTFSRFVSKKVFYHLTVD 1467
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 28.1 bits (61), Expect = 6.4
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 103 YKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMR 162
+KL F S + + + ++ D E E W++ VE D +++E +
Sbjct: 1064 FKLMFIQSQGQVQLTIELLDTEEENSDDPVEAERWSDYVERYMNSDTTSPELREHLAQKP 1123
Query: 163 TRLERSIQML-TLLRAFEARDRNLQEGNLER 192
L R+++ + R E +++ +EGN ++
Sbjct: 1124 VFLPRNLRRIRKCQRGREQQEKEGKEGNSKK 1154
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 28.1 bits (61), Expect = 6.4
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 103 YKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMR 162
+KL F S + + + ++ D E E W++ VE D +++E +
Sbjct: 1064 FKLMFIQSQGQVQLTIELLDTEEENSDDPVEAERWSDYVERYMNSDTTSPELREHLAQKP 1123
Query: 163 TRLERSIQML-TLLRAFEARDRNLQEGNLER 192
L R+++ + R E +++ +EGN ++
Sbjct: 1124 VFLPRNLRRIRKCQRGREQQEKEGKEGNSKK 1154
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 28.1 bits (61), Expect = 6.4
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 103 YKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKMEDIKESIETMR 162
+KL F S + + + ++ D E E W++ VE D +++E +
Sbjct: 1064 FKLMFIQSQGQVQLTIELLDTEEENSDDPVEAERWSDYVERYMNSDTTSPELREHLAQKP 1123
Query: 163 TRLERSIQML-TLLRAFEARDRNLQEGNLER 192
L R+++ + R E +++ +EGN ++
Sbjct: 1124 VFLPRNLRRIRKCQRGREQQEKEGKEGNSKK 1154
>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4470
Score = 28.1 bits (61), Expect = 6.4
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 170 QMLTLLRAFEARDRNLQ--EGNLERVNFWSAVNVAVLLLVAVLQV-----CTLKRFFQDK 222
Q++ + R F + + L+ +G +E V S +++AV +L + Q +K FF+DK
Sbjct: 344 QIIEMTRTFLSPEEVLKGLQGEIEEV--LSGISLAVNVLKELYQTYDFCCVNMKLFFKDK 401
Query: 223 RPVP 226
PVP
Sbjct: 402 EPVP 405
>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 28.1 bits (61), Expect = 6.4
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 170 QMLTLLRAFEARDRNLQ--EGNLERVNFWSAVNVAVLLLVAVLQV-----CTLKRFFQDK 222
Q++ + R F + + L+ +G +E V S +++AV +L + Q +K FF+DK
Sbjct: 344 QIIEMTRTFLSPEEVLKGLQGEIEEV--LSGISLAVNVLKELYQTYDFCCVNMKLFFKDK 401
Query: 223 RPVP 226
PVP
Sbjct: 402 EPVP 405
>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 28.1 bits (61), Expect = 6.4
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 170 QMLTLLRAFEARDRNLQ--EGNLERVNFWSAVNVAVLLLVAVLQV-----CTLKRFFQDK 222
Q++ + R F + + L+ +G +E V S +++AV +L + Q +K FF+DK
Sbjct: 344 QIIEMTRTFLSPEEVLKGLQGEIEEV--LSGISLAVNVLKELYQTYDFCCVNMKLFFKDK 401
Query: 223 RPVP 226
PVP
Sbjct: 402 EPVP 405
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 28.1 bits (61), Expect = 6.4
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 149 VKMEDIKESIETMRTRLERSI--QMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLL 206
V+++ ++ S+E R +L+R + Q+ + + E + L+E +A+NV L
Sbjct: 441 VEIKSVRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEEK-------AALNVK--LQ 491
Query: 207 VAVLQVCTLKRFFQDKRPVPT 227
++L+V L+ F Q + PT
Sbjct: 492 NSLLEVLRLEEFIQQNKTRPT 512
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 28.1 bits (61), Expect = 6.4
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 3 AAGAALALAL-WLLMPPVEVGGAGPP----PIQDG 32
AAG A+ LAL LL+P V VG + PP P+Q G
Sbjct: 9 AAGRAVVLALVLLLLPAVPVGASVPPRPLLPLQPG 43
>gi|4557325 apolipoprotein E precursor [Homo sapiens]
Length = 317
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 132 EEVEGWAEAVEP--EEM---LDVKMEDIKESIETMRTRLERSIQMLTL-LRAFEAR 181
E + W E + EEM +++++KE + +R +LE Q + L AF+AR
Sbjct: 223 ERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQAR 278
>gi|27923592 SEC14-like 3 [Homo sapiens]
Length = 400
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 98 TEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEP 143
+EAG Y L FDN++S + K V F + + L DE ++ + + + P
Sbjct: 356 SEAGVYVLRFDNTYSFVHAKKVSFTV--EVLLPDEGMQKYDKELTP 399
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 27.7 bits (60), Expect = 8.4
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 73 TLESPQGVLLVSESRKADGVHTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDE 132
T E ++ K + + ++E T+ + KL N T+ E ++L++ E
Sbjct: 1041 TAEDAMQIMEQMTKEKTETLASLEDTKQTNAKL--QNELDTLKE---------NNLKNVE 1089
Query: 133 EVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERSIQMLTLLR 176
E+ E + E KME+ ++ IET++ + Q L+ L+
Sbjct: 1090 ELNKSKELLTVENQ---KMEEFRKEIETLKQAAAQKSQQLSALQ 1130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,836,316
Number of Sequences: 37866
Number of extensions: 394573
Number of successful extensions: 1281
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 35
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.