Guide to the Human Genome
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Name: C18orf34 Sequence: fasta or formatted (867aa) NCBI GI: 157671919
Description:

hypothetical protein LOC374864 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {829aa} hypothetical protein LOC374864 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         48           2
 C cysteine            1.3         11           1
 D aspartate           5.8         50           2
 E glutamate          12.1        105           3
 F phenylalanine       3.0         26           2
 G glycine             2.0         17           1
 H histidine           2.5         22           1
 I isoleucine          6.2         54           2
 K lysine             12.1        105           3
 L leucine            10.0         87           2
 M methionine          2.5         22           1
 N asparagine          4.8         42           2
 P proline             1.0          9           1
 Q glutamine           6.2         54           2
 R arginine            4.8         42           2
 S serine              6.6         57           4
 T threonine           5.4         47           2
 V valine              4.2         36           2
 W tryptophan          1.0          9           1
 Y tyrosine            2.8         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC374864 isoform 1 
C18orf34              0.946   hypothetical protein LOC374864 isoform 2 
SYCP1                 0.041   synaptonemal complex protein 1 
MYH1                  0.040   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH4                  0.040   myosin, heavy polypeptide 4, skeletal muscle 
MYH13                 0.039   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH2                  0.039   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.039   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH9                  0.037   myosin, heavy polypeptide 9, non-muscle 
ROCK1                 0.037   Rho-associated, coiled-coil containing protein kinase...
MYH7                  0.037   myosin, heavy chain 7, cardiac muscle, beta 
MYH6                  0.037   myosin heavy chain 6 
MYH3                  0.037   myosin, heavy chain 3, skeletal muscle, embryonic [H...
EEA1                  0.036   early endosome antigen 1, 162kD 
HMMR                  0.036   hyaluronan-mediated motility receptor isoform c [Ho...
CENPE                 0.036   centromere protein E 
CEP250                0.035   centrosomal protein 2 
CEP110                0.035   centrosomal protein 110kDa 
AKAP9                 0.035   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.035   A-kinase anchor protein 9 isoform 3 
GCC2                  0.034   GRIP and coiled-coil domain-containing 2 
MYH10                 0.034   myosin, heavy polypeptide 10, non-muscle 
MYH15                 0.034   myosin, heavy polypeptide 15 
HMMR                  0.034   hyaluronan-mediated motility receptor isoform d [Ho...
MYH11                 0.034   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.034   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GOLGA4                0.033   golgi autoantigen, golgin subfamily a, 4 
MYH8                  0.033   myosin, heavy chain 8, skeletal muscle, perinatal [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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