Search of human proteins with 5802978

Search of human proteins with 5802978

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 2 [Homo sapiens]
         (224 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp...   454   e-128
gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic poly...   119   3e-27
gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic poly...   110   7e-25
gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic pol...   106   1e-23
gi|10190700 activation-induced cytidine deaminase [Homo sapiens]      106   2e-23
gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly...    94   9e-20
gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic poly...    91   8e-19
gi|21955158 phorbolin 1 [Homo sapiens]                                 89   3e-18
gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic poly...    66   2e-11
gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]        64   1e-10
gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic poly...    29   2.8  
gi|17530791 zinc finger protein 354B [Homo sapiens]                    28   4.9  
gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Ho...    28   6.3  
gi|11345454 Fanconi anemia, complementation group E [Homo sapiens]     28   8.3  
gi|106879206 chromosome 14 open reading frame 169 [Homo sapiens]       28   8.3  

>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 2 [Homo sapiens]
          Length = 224

 Score =  454 bits (1169), Expect = e-128
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MAQKEEAAVATEAASQNGEDLENLDDPEKLKELIELPPFEIVTGERLPANFFKFQFRNVE 60
           MAQKEEAAVATEAASQNGEDLENLDDPEKLKELIELPPFEIVTGERLPANFFKFQFRNVE
Sbjct: 1   MAQKEEAAVATEAASQNGEDLENLDDPEKLKELIELPPFEIVTGERLPANFFKFQFRNVE 60

Query: 61  YSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVT 120
           YSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVT
Sbjct: 61  YSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVT 120

Query: 121 WYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMK 180
           WYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMK
Sbjct: 121 WYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMK 180

Query: 181 PQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADILK 224
           PQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADILK
Sbjct: 181 PQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADILK 224


>gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3F isoform a [Homo sapiens]
          Length = 373

 Score =  119 bits (297), Expect = 3e-27
 Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 13/199 (6%)

Query: 30  LKELIELPPFEIVTGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGY 89
           LKE++  P       E +  + F F F+N+  + GRN+++LC+ +E       V   RG 
Sbjct: 184 LKEILRNPM------EAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGV 237

Query: 90  LE---DEHAAAHAEEAFFNTILP-AFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNL 145
                D     HAE  F +        P   Y VTWY S SPC  CA  + + L++  N+
Sbjct: 238 FRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNV 297

Query: 146 RLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPW 205
            L I   RL+ + + + Q  L+ L + G  + IM  +DF+Y W+NFV  ++   + F+PW
Sbjct: 298 NLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD---EPFKPW 354

Query: 206 EDIQENFLYYEEKLADILK 224
           + ++ NFL+ + KL +IL+
Sbjct: 355 KGLKYNFLFLDSKLQEILE 373



 Score =  102 bits (254), Expect = 3e-22
 Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 12/188 (6%)

Query: 43  TGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKG-----GQVQASRGYLEDEHAAA 97
           T ER+  + F + F N    S RN  +LCY V+ +G        ++   + Y + EH   
Sbjct: 8   TVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEH--- 64

Query: 98  HAEEAFFNTILPAFDPALR-YNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFM 156
           HAE  F +       PA + + +TW+VS +PC  C  ++ + L++  N+ L I   RL+ 
Sbjct: 65  HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYY 124

Query: 157 WEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYE 216
           + E + + AL +L +AG +++IM  ++F Y W+NFV     E + F PW    +N+ +  
Sbjct: 125 YWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFV---YSEGQPFMPWYKFDDNYAFLH 181

Query: 217 EKLADILK 224
             L +IL+
Sbjct: 182 RTLKEILR 189


>gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3C [Homo sapiens]
          Length = 190

 Score =  110 bits (276), Expect = 7e-25
 Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 7/177 (3%)

Query: 52  FKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLE---DEHAAAHAEEAFFNTIL 108
           F FQF+N+  ++ RN+T+LC+ VE   +   V    G      D     HAE  F +   
Sbjct: 17  FYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFC 76

Query: 109 P-AFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALK 167
                P  +Y VTWY S SPC  CA  + + L++  N+ L I   RL+ ++ P  Q  L+
Sbjct: 77  DDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLR 136

Query: 168 KLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADILK 224
            L + G  + IM  +DF+Y W+NFV     +++ F+PW+ ++ NF   + +L + L+
Sbjct: 137 SLSQEGVAVEIMDYEDFKYCWENFV---YNDNEPFKPWKGLKTNFRLLKRRLRESLQ 190


>gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3D [Homo sapiens]
          Length = 386

 Score =  106 bits (265), Expect = 1e-23
 Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 13/199 (6%)

Query: 30  LKELIELPPFEIVTGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGY 89
           LKE++  P       E +  + F F F+N+  + GRN+++LC+ +E       V   RG 
Sbjct: 197 LKEILRNPM------EAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGV 250

Query: 90  LE---DEHAAAHAEEAFFNTILP-AFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNL 145
                D     HAE  F +        P   Y VTWY S SPC  CA  + + L++  N+
Sbjct: 251 FRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNV 310

Query: 146 RLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPW 205
            L I   RL  + + + Q  L  L + G  ++IM  +DF   W+NFV  ++   + F+PW
Sbjct: 311 NLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDD---EPFKPW 367

Query: 206 EDIQENFLYYEEKLADILK 224
           + +Q NF   + +L +IL+
Sbjct: 368 KGLQTNFRLLKRRLREILQ 386



 Score = 87.8 bits (216), Expect = 7e-18
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 25/199 (12%)

Query: 45  ERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQ-GKGGQVQAS---RGYLEDEHAAAHAE 100
           ER+  + F   F N     GR+ T+LCY V+ + G+   +  +   RG +  +  + H +
Sbjct: 10  ERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQ 69

Query: 101 EAFFN---------------TILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNL 145
           E +F                  LPA     R+ +TW+VS +PC  C  ++ K L++  N+
Sbjct: 70  EVYFRFENHAEMCFLSWFCGNRLPA---NRRFQITWFVSWNPCLPCVVKVTKFLAEHPNV 126

Query: 146 RLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPW 205
            L I   RL+ + + + +  L +L +AG +++IM  +DF Y W+NFV     E + F PW
Sbjct: 127 TLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFV---CNEGQPFMPW 183

Query: 206 EDIQENFLYYEEKLADILK 224
               +N+      L +IL+
Sbjct: 184 YKFDDNYASLHRTLKEILR 202


>gi|10190700 activation-induced cytidine deaminase [Homo sapiens]
          Length = 198

 Score =  106 bits (264), Expect = 2e-23
 Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 52  FKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILP-A 110
           F +QF+NV ++ GR +T+LCYVV+ +          GYL +++   H E  F   I    
Sbjct: 11  FLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGC-HVELLFLRYISDWD 69

Query: 111 FDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQ-AALKKL 169
            DP   Y VTW+ S SPC  CA  +   L    NL L I   RL+  E+ + +   L++L
Sbjct: 70  LDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRL 129

Query: 170 KEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADIL 223
             AG ++ IM  +D+ Y W  FVE  E   + F+ WE + EN +    +L  IL
Sbjct: 130 HRAGVQIAIMTFKDYFYCWNTFVENHE---RTFKAWEGLHENSVRLSRQLRRIL 180


>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3B [Homo sapiens]
          Length = 382

 Score = 94.0 bits (232), Expect = 9e-20
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 45  ERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDE---HAAAHAEE 101
           ER+  + F   F N     GR+ T+LCY V+ +     +    G    +       HAE 
Sbjct: 10  ERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYFKPQYHAEM 69

Query: 102 AFFNTILPAFDPALR-YNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEP 160
            F +       PA + + +TW+VS +PC  C  ++ + LS+  N+ L I   RL+ + E 
Sbjct: 70  CFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISAARLYYYWER 129

Query: 161 EIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLA 220
           + + AL +L +AG ++ IM  ++F Y W+NFV     E + F PW    EN+ +    L 
Sbjct: 130 DYRRALCRLSQAGARVTIMDYEEFAYCWENFV---YNEGQQFMPWYKFDENYAFLHRTLK 186

Query: 221 DILK 224
           +IL+
Sbjct: 187 EILR 190



 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 18/186 (9%)

Query: 52  FKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASR--GYLEDEHA-------AAHAEEA 102
           F F F N      R +T+LCY VE    G  V   +  G+L +E           HAE  
Sbjct: 198 FTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYGRHAELR 257

Query: 103 FFNTILPAF--DPALRYNVTWYVSSSPCAA--CADRIIKTLSKTKNLRLLILVGRLFMWE 158
           F + ++P+   DPA  Y VTW++S SPC +  CA  +   L +  ++RL I   R++ ++
Sbjct: 258 FLD-LVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYD 316

Query: 159 EPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEK 218
            P  + AL+ L++AG ++ IM   +FEY W  FV +   +   FQPW+ ++E+      +
Sbjct: 317 -PLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYR---QGCPFQPWDGLEEHSQALSGR 372

Query: 219 LADILK 224
           L  IL+
Sbjct: 373 LRAILQ 378


>gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3G [Homo sapiens]
          Length = 384

 Score = 90.9 bits (224), Expect = 8e-19
 Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 24/188 (12%)

Query: 52  FKFQFRNVEYSSGRNKTFLCYVVEA----------QGKG---GQVQASRGYLEDEHAAAH 98
           F F F N  +  GR++T+LCY VE           Q +G    Q     G+LE  HA   
Sbjct: 202 FTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHA--- 258

Query: 99  AEEAFFNTILPAF--DPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFM 156
             E  F  ++P +  D    Y VT + S SPC +CA  + K +SK K++ L I   R++ 
Sbjct: 259 --ELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIYD 316

Query: 157 WEEPEIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYE 216
            ++   Q  L+ L EAG K+ IM   +F++ W  FV+    +   FQPW+ + E+     
Sbjct: 317 -DQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDH---QGCPFQPWDGLDEHSQDLS 372

Query: 217 EKLADILK 224
            +L  IL+
Sbjct: 373 GRLRAILQ 380



 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 43  TGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQGKGG---QVQASRGYLEDEHAAAHA 99
           T ER+  + F + F N    S RN  +LCY V+ +G        +  RG +  E    H 
Sbjct: 8   TVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSE-LKYHP 66

Query: 100 EEAFFNTILP--AFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMW 157
           E  FF+             Y VTWY+S SPC  C   +   L++   + L I V RL+ +
Sbjct: 67  EMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYF 126

Query: 158 EEPEIQAALKKL--KEAG--CKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFL 213
            +P+ Q AL+ L  K  G    ++IM   +F++ W  FV  +    + F+PW ++ + ++
Sbjct: 127 WDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQR---ELFEPWNNLPKYYI 183

Query: 214 YYEEKLADILK 224
                L +IL+
Sbjct: 184 LLHIMLGEILR 194


>gi|21955158 phorbolin 1 [Homo sapiens]
          Length = 199

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 18/180 (10%)

Query: 58  NVEYSSGRNKTFLCYVVEAQGKGGQVQAS--RGYLEDEHA-------AAHAEEAFFNTIL 108
           N     GR+KT+LCY VE    G  V+    RG+L ++           HAE  F + ++
Sbjct: 21  NFNNGIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAELRFLD-LV 79

Query: 109 PAF--DPALRYNVTWYVSSSPCAA--CADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQA 164
           P+   DPA  Y VTW++S SPC +  CA  +   L +  ++RL I   R++ ++ P  + 
Sbjct: 80  PSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYD-PLYKE 138

Query: 165 ALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADILK 224
           AL+ L++AG ++ IM   +F++ W  FV+    +   FQPW+ + E+      +L  IL+
Sbjct: 139 ALQMLRDAGAQVSIMTYDEFKHCWDTFVDH---QGCPFQPWDGLDEHSQALSGRLRAILQ 195


>gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3H [Homo sapiens]
          Length = 183

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 47  LPANFFKFQFRN---VEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAF 103
           L A  F+ QF N   +       K  LCY +  Q        +RGY E++    HAE  F
Sbjct: 4   LTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGS---TPTRGYFENKKKC-HAEICF 59

Query: 104 FNTILP-AFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFM-WEEPE 161
            N I     D    Y VT Y++ SPC++CA  ++  +    +L L I   RL+  W +P+
Sbjct: 60  INEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQ 119

Query: 162 IQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQE 210
            Q  L+ L  +   + +M   +F   W+NFV+ E+  S  F P++ ++E
Sbjct: 120 -QKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLS--FNPYKMLEE 165


>gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]
          Length = 236

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 28/88 (31%), Positives = 52/88 (59%)

Query: 111 FDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLK 170
           F P++  ++TW++S SPC  C+  I + LS+   + L+I V RLF   + + +  L+ L 
Sbjct: 76  FHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLFWHMDQQNRQGLRDLV 135

Query: 171 EAGCKLRIMKPQDFEYVWQNFVEQEEGE 198
            +G  ++IM+  ++ + W+NFV    G+
Sbjct: 136 NSGVTIQIMRASEYYHCWRNFVNYPPGD 163


>gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3F isoform b [Homo sapiens]
          Length = 101

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 43 TGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQG 78
          T ER+  + F + F N    S RN  +LCY V+ +G
Sbjct: 8  TVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKG 43


>gi|17530791 zinc finger protein 354B [Homo sapiens]
          Length = 612

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 150 LVGRLFMWEEP-EIQAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDI 208
           ++  L   E+P E++     +   GCK    K         +F EQ     K  +PW  I
Sbjct: 62  VISLLQQGEDPWEVEKDSSGVSSLGCK-STPKMTKSTQTQDSFQEQIRKRLKRDEPWNFI 120

Query: 209 QENFLYYEEKL 219
            E    YEEKL
Sbjct: 121 SERSCIYEEKL 131


>gi|21955154 NLR family, pyrin domain containing 12 isoform 2 [Homo
            sapiens]
          Length = 1061

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 113  PALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEA 172
            PA R    W  S    A   + +  TL   + L  L L        +  ++   K+L   
Sbjct: 968  PACRLQKLWLDSCGLTAKACENLYFTLGINQTLTDLYLTNNAL--GDTGVRLLCKRLSHP 1025

Query: 173  GCKLRIM 179
            GCKLR++
Sbjct: 1026 GCKLRVL 1032


>gi|11345454 Fanconi anemia, complementation group E [Homo sapiens]
          Length = 536

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 14  ASQNGEDLENLDDPEKLKELIELP 37
           A + GED  NLDD + L E +ELP
Sbjct: 258 AVKTGEDGSNLDDAKGLAESLELP 281


>gi|106879206 chromosome 14 open reading frame 169 [Homo sapiens]
          Length = 641

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 162 IQAALKKLKEAGCKLRIMKPQDFE-YVWQ 189
           + AA   L +AGC LR++ PQ F   VWQ
Sbjct: 282 LPAAAWSLYQAGCSLRLLCPQAFSTTVWQ 310


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,712,802
Number of Sequences: 37866
Number of extensions: 380959
Number of successful extensions: 1034
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 19
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.