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Search of human proteins with 5730097
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5730097 tumor necrosis factor superfamily, member 13b
isoform 1 [Homo sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5730097 tumor necrosis factor superfamily, member 13b isoform... 563 e-161
gi|224548983 tumor necrosis factor superfamily, member 13b isofo... 514 e-146
gi|4507599 tumor necrosis factor ligand superfamily, member 13 i... 91 2e-18
gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens] 89 4e-18
gi|26051248 tumor necrosis factor ligand superfamily, member 13 ... 87 1e-17
gi|26051246 tumor necrosis factor ligand superfamily, member 13 ... 84 2e-16
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 41 0.001
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 37 0.020
gi|25952111 tumor necrosis factor alpha [Homo sapiens] 36 0.034
gi|154091007 hypothetical protein LOC136288 [Homo sapiens] 35 0.075
gi|4507593 tumor necrosis factor (ligand) superfamily, member 10... 33 0.37
gi|6806893 lymphotoxin alpha precursor [Homo sapiens] 32 0.49
gi|229092381 lymphotoxin alpha precursor [Homo sapiens] 32 0.49
gi|89257348 homeo box HB9 [Homo sapiens] 31 1.1
gi|171543825 gamma-glutamyltransferase 6 isoform a [Homo sapiens] 31 1.4
gi|4557329 fas ligand [Homo sapiens] 30 2.4
gi|145611434 abhydrolase domain containing 8 [Homo sapiens] 30 2.4
gi|115298663 SCL/TAL1 interrupting locus isoform 1 [Homo sapiens] 30 3.2
gi|115298661 SCL/TAL1 interrupting locus isoform 2 [Homo sapiens] 30 3.2
gi|224465235 euchromatic histone-lysine N-methyltransferase 1 is... 30 3.2
gi|224465233 euchromatic histone-lysine N-methyltransferase 1 is... 30 3.2
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 30 3.2
gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4... 30 3.2
gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ... 30 3.2
gi|23510445 tumor necrosis factor (ligand) superfamily, member 1... 29 4.1
gi|19923354 zinc finger protein 238 isoform 2 [Homo sapiens] 29 4.1
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 29 4.1
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 29 4.1
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 29 4.1
gi|45439302 zinc finger protein 238 isoform 1 [Homo sapiens] 29 4.1
>gi|5730097 tumor necrosis factor superfamily, member 13b isoform 1
[Homo sapiens]
Length = 285
Score = 563 bits (1451), Expect = e-161
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC 60
MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC
Sbjct: 1 MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC 60
Query: 61 LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP 120
LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP
Sbjct: 61 LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP 120
Query: 121 GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEE 180
GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEE
Sbjct: 121 GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEE 180
Query: 181 KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL 240
KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL
Sbjct: 181 KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL 240
Query: 241 PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL
Sbjct: 241 PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
>gi|224548983 tumor necrosis factor superfamily, member 13b isoform
2 [Homo sapiens]
Length = 266
Score = 514 bits (1325), Expect = e-146
Identities = 266/285 (93%), Positives = 266/285 (93%), Gaps = 19/285 (6%)
Query: 1 MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC 60
MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC
Sbjct: 1 MDDSTEREQSRLTSCLKKREEMKLKECVSILPRKESPSVRSSKDGKLLAATLLLALLSCC 60
Query: 61 LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP 120
LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP
Sbjct: 61 LTVVSFYQVAALQGDLASLRAELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAP 120
Query: 121 GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEE 180
GEGNSSQNSRNKRAVQGPEET GSYTFVPWLLSFKRGSALEE
Sbjct: 121 GEGNSSQNSRNKRAVQGPEET-------------------GSYTFVPWLLSFKRGSALEE 161
Query: 181 KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL 240
KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL
Sbjct: 162 KENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL 221
Query: 241 PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 285
PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL
Sbjct: 222 PNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKLL 266
>gi|4507599 tumor necrosis factor ligand superfamily, member 13
isoform alpha proprotein [Homo sapiens]
Length = 250
Score = 90.5 bits (223), Expect = 2e-18
Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 73 QGDLASLRAELQGHHAEKLPA--GAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSR 130
Q +L SLR E+ P+ G G P L E + L+ +E + + SR
Sbjct: 52 QTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSS--DALEAWE--------NGERSR 101
Query: 131 NKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKET 190
+RAV ++ L L+ + T T V W + +RG L+ + + +++
Sbjct: 102 KRRAVLTQKQKKQHSVLHLVPINATSK-DDSDVTEVMWQPALRRGRGLQAQGYGVRIQDA 160
Query: 191 GYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPN--NSCYSA 248
G + +Y QVL+ D T+ MG ++ R+ + TLFRCI++MP NSCYSA
Sbjct: 161 GVYLLYSQVLFQDVTFTMGQVVSRE------GQGRQETLFRCIRSMPSHPDRAYNSCYSA 214
Query: 249 GIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
G+ L +GD L + IPR A+++L TF G +KL
Sbjct: 215 GVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 250
>gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens]
Length = 330
Score = 89.0 bits (219), Expect = 4e-18
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 9/162 (5%)
Query: 125 SSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENK 184
+ + SR +RAV ++ L L+ + T T V W + +RG L+ +
Sbjct: 176 NGERSRKRRAVLTQKQKKQHSVLHLVPINATSK-DDSDVTEVMWQPALRRGRGLQAQGYG 234
Query: 185 ILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPN-- 242
+ +++ G + +Y QVL+ D T+ MG ++ R+ + TLFRCI++MP
Sbjct: 235 VRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE------GQGRQETLFRCIRSMPSHPDRAY 288
Query: 243 NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
NSCYSAG+ L +GD L + IPR A+++L TF G +KL
Sbjct: 289 NSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 330
>gi|26051248 tumor necrosis factor ligand superfamily, member 13
isoform gamma proprotein [Homo sapiens]
Length = 247
Score = 87.4 bits (215), Expect = 1e-17
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 73 QGDLASLRAELQGHHAEKLPA--GAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSR 130
Q +L SLR E+ P+ G G P L E + L+ +E + + SR
Sbjct: 52 QTELQSLRREVSRLQGTGGPSQNGEGYPWQSLPEQSS--DALEAWE--------NGERSR 101
Query: 131 NKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKENKILVKET 190
+RAV ++ L L+ + T T V W + +RG L+ + + +++
Sbjct: 102 KRRAVLTQKQKKQHSVLHLVPINATSK-DDSDVTEVMWQPALRRGRGLQAQGYGVRIQDA 160
Query: 191 GYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETLPN--NSCYSA 248
G + +Y QVL+ D T+ MG ++ R+ + TLFRCI++MP NSCYSA
Sbjct: 161 GVYLLYSQVLFQDVTFTMGQVVSRE------GQGRQETLFRCIRSMPSHPDRAYNSCYSA 214
Query: 249 GIAKLEEGDELQLAIPRENAQISLDGDVTFFG 280
G+ L +GD L + IPR A+++L TF G
Sbjct: 215 GVFHLHQGDILSVIIPRARAKLNLSPHGTFLG 246
>gi|26051246 tumor necrosis factor ligand superfamily, member 13
isoform beta proprotein [Homo sapiens]
Length = 234
Score = 83.6 bits (205), Expect = 2e-16
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 121 GEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKG----------SYTFVPWLL 170
G G SQN PE++ D L+ + E ++ T V W
Sbjct: 67 GTGGPSQNGEGYPWQSLPEQS--SDALEAWENGERSRKRRAVLTQKQKNDSDVTEVMWQP 124
Query: 171 SFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLF 230
+ +RG L+ + + +++ G + +Y QVL+ D T+ MG ++ R+ + TLF
Sbjct: 125 ALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSRE------GQGRQETLF 178
Query: 231 RCIQNMPETLPN--NSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
RCI++MP NSCYSAG+ L +GD L + IPR A+++L TF G +KL
Sbjct: 179 RCIRSMPSHPDRAYNSCYSAGVFHLHQGDILSVIIPRARAKLNLSPHGTFLGFVKL 234
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 41.2 bits (95), Expect = 0.001
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 178 LEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMP 237
L + ++ V G +FIY QV Y + T + V DE + R I+
Sbjct: 286 LHPRSGELEVLVDGTYFIYSQVYYINFTDFASY-------EVVVDEKPFLQCTRSIETGK 338
Query: 238 ETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
N+CY+AG+ L+ ++ + + + I++ TFFGA++L
Sbjct: 339 TNY--NTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRL 383
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 37.0 bits (84), Expect = 0.020
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 178 LEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMP 237
L + ++ V G +FIY QV + Y + + V DE + R I+
Sbjct: 286 LHPRSGELEVLVDGTYFIYSQV----EVYYI-NFTDFASYEVVVDEKPFLQCTRSIETGK 340
Query: 238 ETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
N+CY+AG+ L+ ++ + + + I++ TFFGA++L
Sbjct: 341 TNY--NTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRL 385
>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
Length = 233
Score = 36.2 bits (82), Expect = 0.034
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 176 SALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVH----VFGDELSLVTLFR 231
+ +E ++N+++V G + IY QVL+ + H++ + + +++L++ +
Sbjct: 115 NGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSYQTKVNLLSAIK 174
Query: 232 --CIQNMPETLPNNSCYS----AGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
C + PE Y G+ +LE+GD L I R + + +FG + L
Sbjct: 175 SPCQRETPEGAEAKPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL 233
>gi|154091007 hypothetical protein LOC136288 [Homo sapiens]
Length = 295
Score = 35.0 bits (79), Expect = 0.075
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 99 KAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTI 158
KAG P AG ++ PP PG+ NSS + +K G ++ Q + +D TP
Sbjct: 182 KAGTPLGPKNPAGSRLSFPPVPGQKNSSPTNFSKLISNGYKDEWLQQQQRADSDKRTPKT 241
Query: 159 QKGS 162
+ S
Sbjct: 242 SRAS 245
>gi|4507593 tumor necrosis factor (ligand) superfamily, member 10
[Homo sapiens]
Length = 281
Score = 32.7 bits (73), Expect = 0.37
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 176 SALEEKENKILVKETGYFFIYGQVLY------TDKTYAMGHLIQR-KKVHVFGDELSLVT 228
S L + ++++ E G+++IY Q + + T ++Q K + D + L+
Sbjct: 165 SNLHLRNGELVIHEKGFYYIYSQTYFRFQEEIKENTKNDKQMVQYIYKYTSYPDPILLMK 224
Query: 229 LFR--CIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGA 281
R C E S Y GI +L+E D + +++ E+ I +D + +FFGA
Sbjct: 225 SARNSCWSKDAE-YGLYSIYQGGIFELKENDRIFVSVTNEHL-IDMDHEASFFGA 277
>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 32.3 bits (72), Expect = 0.49
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 183 NKILVKETGYFFIYGQVLYTDKTYA----MGHLIQRKKVHVFGDELSLVTLFRCIQNMPE 238
N +LV +G +F+Y QV+++ K Y+ L +V +F + Q M
Sbjct: 97 NSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKM-- 154
Query: 239 TLPN------NSCYSAGIAKLEEGDELQL---AIPRENAQISLDGDVTFFGALKL 284
P +S Y +L +GD+L IP + L FFGA L
Sbjct: 155 VYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIP----HLVLSPSTVFFGAFAL 205
>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 32.3 bits (72), Expect = 0.49
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 183 NKILVKETGYFFIYGQVLYTDKTYA----MGHLIQRKKVHVFGDELSLVTLFRCIQNMPE 238
N +LV +G +F+Y QV+++ K Y+ L +V +F + Q M
Sbjct: 97 NSLLVPTSGIYFVYSQVVFSGKAYSPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKM-- 154
Query: 239 TLPN------NSCYSAGIAKLEEGDELQL---AIPRENAQISLDGDVTFFGALKL 284
P +S Y +L +GD+L IP + L FFGA L
Sbjct: 155 VYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIP----HLVLSPSTVFFGAFAL 205
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 31.2 bits (69), Expect = 1.1
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 82 ELQGHHAEKLPAGAG-APKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEE 140
E AEK G G A K G EE A ++ PPAPG+ S + R+ R PEE
Sbjct: 304 EQAAQEAEKQKGGGGGAGKGGAEEPGAE----ELLGPPAPGDKGSGRRLRDLRD-SDPEE 358
Query: 141 TVTQD 145
+D
Sbjct: 359 DEDED 363
>gi|171543825 gamma-glutamyltransferase 6 isoform a [Homo sapiens]
Length = 493
Score = 30.8 bits (68), Expect = 1.4
Identities = 42/177 (23%), Positives = 60/177 (33%), Gaps = 33/177 (18%)
Query: 20 EEMKLKECVSILPRKESPSVRSSKDG-----KLLAATLLLALLSCCLTVVSFYQVAALQG 74
EE + E + + PR+ S R+ G + A LLL + C L V G
Sbjct: 27 EEEETSEALVLNPRRHQDSSRNKAGGLPGTWARVVAALLLLAVGCSLAVRQLQNQGRSTG 86
Query: 75 DLASLRAELQGHH----------------AEKLPAGAGAPKAGLEEAPAVTAGLKIFEPP 118
L S+ GH E L AG AG+ A L + P
Sbjct: 87 SLGSVAPPPGGHSHGPGVYHHGAIISPAGRELLVAGGNVVDAGVGAALC----LAVVHPH 142
Query: 119 APGEG-------NSSQNSRNKRAVQGPEETVTQDCLQLIADSETPTIQKGSYTFVPW 168
A G G + S + + GP +T+ L L A T + + +PW
Sbjct: 143 ATGLGAMFWGLFHDSSSGNSTALTSGPAQTLAPG-LGLPAALPTLHLLHARFGRLPW 198
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 30.0 bits (66), Expect = 2.4
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 19/119 (15%)
Query: 176 SALEEKENKILVKETGYFFIYGQVLY----------TDKTYAMGHLIQRKKVHVFGDELS 225
S ++ K+ +++ ETG +F+Y +V + + K Y + V + G +S
Sbjct: 172 SGVKYKKGGLVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMS 231
Query: 226 LVTLFRCIQNMPETLPNNSCYSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
T + + S Y + L D L + + E + ++ + TFFG KL
Sbjct: 232 YCTTGQ--------MWARSSYLGAVFNLTSADHLYVNV-SELSLVNFEESQTFFGLYKL 281
>gi|145611434 abhydrolase domain containing 8 [Homo sapiens]
Length = 439
Score = 30.0 bits (66), Expect = 2.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 94 GAGAPKAGLEEAPAVTAGLK-IFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDC 146
G+G P A LE A AG P + G G+ S + +R + P+ T+ DC
Sbjct: 109 GSGEPPAALEVELADPAGSDGRLAPGSAGSGSGSGSGGRRRRARRPKRTIHIDC 162
>gi|115298663 SCL/TAL1 interrupting locus isoform 1 [Homo sapiens]
Length = 1288
Score = 29.6 bits (65), Expect = 3.2
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 92 PAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGN-SSQNSRNKRAVQGPEETVTQDCLQLI 150
P+ G P ++ PA+ K+ +PPA +GN ++NS + GP + D + +
Sbjct: 483 PSLRGIPNQLNQDKPALLRHCKVRQPPAYKKGNPHTRNSIKPSSHNGP----SHDIFEKL 538
Query: 151 ADSETPTIQKGSYTFVPWLLSFKRGSALEEKE 182
+Q Y P L+ ++ S + +
Sbjct: 539 QTVSAGNVQNEEYPIRPSTLNSRQSSLAPQSQ 570
>gi|115298661 SCL/TAL1 interrupting locus isoform 2 [Homo sapiens]
Length = 1287
Score = 29.6 bits (65), Expect = 3.2
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 92 PAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGN-SSQNSRNKRAVQGPEETVTQDCLQLI 150
P+ G P ++ PA+ K+ +PPA +GN ++NS + GP + D + +
Sbjct: 483 PSLRGIPNQLNQDKPALLRHCKVRQPPAYKKGNPHTRNSIKPSSHNGP----SHDIFEKL 538
Query: 151 ADSETPTIQKGSYTFVPWLLSFKRGSALEEKE 182
+Q Y P L+ ++ S + +
Sbjct: 539 QTVSAGNVQNEEYPIRPSTLNSRQSSLAPQSQ 570
>gi|224465235 euchromatic histone-lysine N-methyltransferase 1
isoform 2 [Homo sapiens]
Length = 808
Score = 29.6 bits (65), Expect = 3.2
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 77 ASLRAELQGHHAEKLPAGAG-------------APKAGLEEAPAVTAGLKIFEPPAPG 121
++L + L GH A+ LP GAG AP A L E A T K+ PAPG
Sbjct: 141 STLASSLPGHAAKTLPGGAGKGRTPSAFPQTPAAPPATLGEGSADTEDRKL---PAPG 195
>gi|224465233 euchromatic histone-lysine N-methyltransferase 1
isoform 1 [Homo sapiens]
Length = 1298
Score = 29.6 bits (65), Expect = 3.2
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 77 ASLRAELQGHHAEKLPAGAG-------------APKAGLEEAPAVTAGLKIFEPPAPG 121
++L + L GH A+ LP GAG AP A L E A T K+ PAPG
Sbjct: 141 STLASSLPGHAAKTLPGGAGKGRTPSAFPQTPAAPPATLGEGSADTEDRKL---PAPG 195
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 29.6 bits (65), Expect = 3.2
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 81 AELQGHHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEE 140
A +G + + P + P + + + PP PGEG S+ S A +GP
Sbjct: 131 AASEGRNTSRPPTSSEEPSTSVPPTASEVPSTSL--PPTPGEGTST--SVPPTAYEGPST 186
Query: 141 TVTQDCLQLIADSETPTIQKGSYTFVP 167
+V + + S PT +G T VP
Sbjct: 187 SVVPTPDEGPSTSVLPTPGEGPGTSVP 213
>gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
[Homo sapiens]
Length = 344
Score = 29.6 bits (65), Expect = 3.2
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 53 LLALLSCCLTVV----SFYQVAALQGDLASLRAELQGHH-------AEKLPAGAGAPKAG 101
LL LL+ CLTVV S Y V A+Q ++ + + H + L A K
Sbjct: 15 LLLLLTLCLTVVGWATSNYFVGAIQ-EIPKAKEFMANFHKTLILGKGKTLTNEASTKKVE 73
Query: 102 LEEAPAVTAGLK-----IFEPPAPGEGNSSQNSRNKRAVQGPEE 140
L+ P+V+ L+ IF+P E ++N + R P+E
Sbjct: 74 LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQE 117
>gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
[Homo sapiens]
Length = 344
Score = 29.6 bits (65), Expect = 3.2
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 53 LLALLSCCLTVV----SFYQVAALQGDLASLRAELQGHH-------AEKLPAGAGAPKAG 101
LL LL+ CLTVV S Y V A+Q ++ + + H + L A K
Sbjct: 15 LLLLLTLCLTVVGWATSNYFVGAIQ-EIPKAKEFMANFHKTLILGKGKTLTNEASTKKVE 73
Query: 102 LEEAPAVTAGLK-----IFEPPAPGEGNSSQNSRNKRAVQGPEE 140
L+ P+V+ L+ IF+P E ++N + R P+E
Sbjct: 74 LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQE 117
>gi|23510445 tumor necrosis factor (ligand) superfamily, member 15
[Homo sapiens]
Length = 251
Score = 29.3 bits (64), Expect = 4.1
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 185 ILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSLVTLFRCIQNMPETL---- 240
+L+ E+G +FIY QV + T + Q + + D +++V + + + PE
Sbjct: 139 LLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNK-PDSITVV-ITKVTDSYPEPTQLLM 196
Query: 241 -PNNSC----------YSAGIAKLEEGDELQLAIPRENAQISLDGDVTFFGALKL 284
+ C Y + L+EGD+L + + + D TFFGA L
Sbjct: 197 GTKSVCEVGSNWFQPIYLGAMFSLQEGDKLMVNVSDISLVDYTKEDKTFFGAFLL 251
>gi|19923354 zinc finger protein 238 isoform 2 [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 4.1
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 90 KLPA-GAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCL 147
+LP+ AG P+AG E P TA K P SS S ++R+V ++ DC+
Sbjct: 186 RLPSDSAGIPQAGGEAEPHATAAGKTVASPC-----SSTESLSQRSVTSVRDSADVDCV 239
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 4.1
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 86 HHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQD 145
H E P GA + + P +EPP PG ++ SR++R P T
Sbjct: 92 HFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATAT-GSRHRREPPSPGATTAGS 150
Query: 146 C 146
C
Sbjct: 151 C 151
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 4.1
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 86 HHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQD 145
H E P GA + + P +EPP PG ++ SR++R P T
Sbjct: 92 HFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATAT-GSRHRREPPSPGATTAGS 150
Query: 146 C 146
C
Sbjct: 151 C 151
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 4.1
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 86 HHAEKLPAGAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQD 145
H E P GA + + P +EPP PG ++ SR++R P T
Sbjct: 92 HFQEPPPLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATAT-GSRHRREPPSPGATTAGS 150
Query: 146 C 146
C
Sbjct: 151 C 151
>gi|45439302 zinc finger protein 238 isoform 1 [Homo sapiens]
Length = 531
Score = 29.3 bits (64), Expect = 4.1
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 90 KLPA-GAGAPKAGLEEAPAVTAGLKIFEPPAPGEGNSSQNSRNKRAVQGPEETVTQDCL 147
+LP+ AG P+AG E P TA K P SS S ++R+V ++ DC+
Sbjct: 195 RLPSDSAGIPQAGGEAEPHATAAGKTVASPC-----SSTESLSQRSVTSVRDSADVDCV 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,003,776
Number of Sequences: 37866
Number of extensions: 503151
Number of successful extensions: 1821
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 47
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.