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Search of human proteins with 5729997
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]
(218 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens] 446 e-126
gi|34485711 Ras-related protein Rab-27A [Homo sapiens] 322 2e-88
gi|34485709 Ras-related protein Rab-27A [Homo sapiens] 322 2e-88
gi|34485706 Ras-related protein Rab-27A [Homo sapiens] 322 2e-88
gi|19923264 Ras-related protein Rab-27A [Homo sapiens] 322 2e-88
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 186 2e-47
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 182 1e-46
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 181 6e-46
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 170 1e-42
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 167 8e-42
gi|16933567 mel transforming oncogene [Homo sapiens] 166 2e-41
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 163 1e-40
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 162 2e-40
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 161 4e-40
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 161 4e-40
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 161 4e-40
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 159 1e-39
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 157 5e-39
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 157 7e-39
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 148 3e-36
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 142 2e-34
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 142 2e-34
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 142 3e-34
gi|116812567 RAB25 [Homo sapiens] 141 4e-34
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 139 2e-33
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 137 7e-33
gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo s... 137 9e-33
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 136 1e-32
gi|10880989 RAB18, member RAS oncogene family [Homo sapiens] 132 2e-31
gi|19923483 GTPase Rab14 [Homo sapiens] 132 3e-31
>gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 446 bits (1148), Expect = e-126
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG
Sbjct: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
Query: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN
Sbjct: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
Query: 121 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL
Sbjct: 121 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
Query: 181 IMKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218
IMKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC
Sbjct: 181 IMKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218
>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 322 bits (824), Expect = 2e-88
Identities = 158/221 (71%), Positives = 185/221 (83%), Gaps = 3/221 (1%)
Query: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
M+DGDYDYLIK LALGDSGVGKT+ LY+YTD KFN KFITTVGIDFREKRVVY A GP+G
Sbjct: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
Query: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
++G+ ++HLQLWDTAGQERFRSLTTAFFRDAMGFLL+FDLT++QSFLNVRNW+SQLQ +
Sbjct: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
Query: 121 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
AYCENPDIVL GNK+DL DQR V E +A LA+KYGIPYFETSAA G N+ +A+E LLDL
Sbjct: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
Query: 181 IMKRMEQCVEKTQIPDTV---NGGNSGNLDGEKPPEKKCIC 218
IMKRME+CV+K+ IP+ V NG S + E+ + C C
Sbjct: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|34485709 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 322 bits (824), Expect = 2e-88
Identities = 158/221 (71%), Positives = 185/221 (83%), Gaps = 3/221 (1%)
Query: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
M+DGDYDYLIK LALGDSGVGKT+ LY+YTD KFN KFITTVGIDFREKRVVY A GP+G
Sbjct: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
Query: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
++G+ ++HLQLWDTAGQERFRSLTTAFFRDAMGFLL+FDLT++QSFLNVRNW+SQLQ +
Sbjct: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
Query: 121 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
AYCENPDIVL GNK+DL DQR V E +A LA+KYGIPYFETSAA G N+ +A+E LLDL
Sbjct: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
Query: 181 IMKRMEQCVEKTQIPDTV---NGGNSGNLDGEKPPEKKCIC 218
IMKRME+CV+K+ IP+ V NG S + E+ + C C
Sbjct: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|34485706 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 322 bits (824), Expect = 2e-88
Identities = 158/221 (71%), Positives = 185/221 (83%), Gaps = 3/221 (1%)
Query: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
M+DGDYDYLIK LALGDSGVGKT+ LY+YTD KFN KFITTVGIDFREKRVVY A GP+G
Sbjct: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
Query: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
++G+ ++HLQLWDTAGQERFRSLTTAFFRDAMGFLL+FDLT++QSFLNVRNW+SQLQ +
Sbjct: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
Query: 121 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
AYCENPDIVL GNK+DL DQR V E +A LA+KYGIPYFETSAA G N+ +A+E LLDL
Sbjct: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
Query: 181 IMKRMEQCVEKTQIPDTV---NGGNSGNLDGEKPPEKKCIC 218
IMKRME+CV+K+ IP+ V NG S + E+ + C C
Sbjct: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|19923264 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 322 bits (824), Expect = 2e-88
Identities = 158/221 (71%), Positives = 185/221 (83%), Gaps = 3/221 (1%)
Query: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
M+DGDYDYLIK LALGDSGVGKT+ LY+YTD KFN KFITTVGIDFREKRVVY A GP+G
Sbjct: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
Query: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
++G+ ++HLQLWDTAGQERFRSLTTAFFRDAMGFLL+FDLT++QSFLNVRNW+SQLQ +
Sbjct: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
Query: 121 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
AYCENPDIVL GNK+DL DQR V E +A LA+KYGIPYFETSAA G N+ +A+E LLDL
Sbjct: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
Query: 181 IMKRMEQCVEKTQIPDTV---NGGNSGNLDGEKPPEKKCIC 218
IMKRME+CV+K+ IP+ V NG S + E+ + C C
Sbjct: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 186 bits (471), Expect = 2e-47
Identities = 88/219 (40%), Positives = 145/219 (66%), Gaps = 15/219 (6%)
Query: 2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS 61
+D ++DY+ K+L +G+S VGKT+FL+RY D+ F P F++TVGIDF+ K + N +
Sbjct: 15 SDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK----- 69
Query: 62 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 121
++ LQ+WDTAGQER+R++TTA++R AMGF+LM+D+T+++SF V++W +Q++ +
Sbjct: 70 -----RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 124
Query: 122 YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 181
+ +N ++L+GNK D+ D+R V+ + R+LAD G +FE SA NV++ E L+D+I
Sbjct: 125 W-DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 183
Query: 182 MKRMEQCVEKTQIPDTVNGGNSGN--LDGEKPPEKKCIC 218
++M + ++ V G G D + PP + C C
Sbjct: 184 CEKMSESLDTAD--PAVTGAKQGPQLSDQQVPPHQDCAC 220
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 182 bits (463), Expect = 1e-46
Identities = 90/216 (41%), Positives = 138/216 (63%), Gaps = 12/216 (5%)
Query: 3 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 62
D ++DY+ KLL +G+S VGKT+FL+RY D+ F P F++TVGIDF+ K V + +
Sbjct: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK------ 69
Query: 63 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 122
++ LQ+WDTAGQER+R++TTA++R AMGFLLM+D+ +Q+SF V++W +Q++ ++
Sbjct: 70 ----RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW 125
Query: 123 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 182
+N ++L+GNK DL D+R V R LAD G +FE SA NV++ E L+D+I
Sbjct: 126 -DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184
Query: 183 KRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218
++M + +E + + NG D P C C
Sbjct: 185 EKMNESLEPSSSSGS-NGKGPAVGDAPAPQPSSCSC 219
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 181 bits (458), Expect = 6e-46
Identities = 86/217 (39%), Positives = 143/217 (65%), Gaps = 12/217 (5%)
Query: 2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS 61
+D ++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGIDF+ K V N +
Sbjct: 23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEK----- 77
Query: 62 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 121
++ LQ+WDTAGQER+R++TTA++R AMGF+LM+D+T+++SF V++W +Q++ +
Sbjct: 78 -----RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 132
Query: 122 YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 181
+ +N ++L+GNK D+ D+R ++ + + L ++ G +FETSA NV++ E L+D+I
Sbjct: 133 W-DNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
Query: 182 MKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218
+M + +E T T N+ + PP+ C C
Sbjct: 192 CDKMSESLE-TDPAITAAKQNTRLKETPPPPQPNCAC 227
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 170 bits (430), Expect = 1e-42
Identities = 84/219 (38%), Positives = 142/219 (64%), Gaps = 16/219 (7%)
Query: 2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS 61
+D ++DY+ KLL +G+S VGKT+FL+RY D+ F P F++TVGIDF+ K V + +
Sbjct: 15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK----- 69
Query: 62 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 121
+V LQ+WDTAGQER+R++TTA++R AMGF+LM+D+T+++SF V++W +Q++ +
Sbjct: 70 -----RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 124
Query: 122 YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 181
+ +N ++L+GNK D+ ++R V + + LA++ G +FE SA +V +A E L+D I
Sbjct: 125 W-DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 183
Query: 182 MKRMEQCVEKTQIPDTVNGGNSGNLDGEKPP--EKKCIC 218
+M ++ ++ G + + PP ++ C C
Sbjct: 184 CDKMSDSLD---TDPSMLGSSKNTRLSDTPPLLQQNCSC 219
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 167 bits (422), Expect = 8e-42
Identities = 79/182 (43%), Positives = 129/182 (70%), Gaps = 11/182 (6%)
Query: 6 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 65
YDYL KLL +GDSGVGKT L+R++++ FN FI+T+GIDF+ + + + +
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGK--------- 55
Query: 66 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 125
K+ LQ+WDTAGQERFR++TTA++R AMG +L++D+T+++SF N++NW+ ++ +A +
Sbjct: 56 -KIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHA-SSD 113
Query: 126 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 185
+ +++GNK D+ D+R+V++ + +LA YGI + ETSA + NVE+A TL IM ++
Sbjct: 114 VERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL 173
Query: 186 EQ 187
+
Sbjct: 174 NR 175
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 166 bits (419), Expect = 2e-41
Identities = 84/199 (42%), Positives = 133/199 (66%), Gaps = 15/199 (7%)
Query: 6 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 65
YDYL KLL +GDSGVGKT L+R++++ FN FI+T+GIDF+ + + + +
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK--------- 55
Query: 66 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 125
++ LQ+WDTAGQERFR++TTA++R AMG +L++D+T+++SF N+RNW+ ++ +A +
Sbjct: 56 -RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 126 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 185
++L GNK D+ D+R+V++ + +LA YGI + ETSA NVE A TL I +M
Sbjct: 115 EKMIL-GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
Query: 186 EQCVEKTQIPDTVNGGNSG 204
++ +E ++ G N G
Sbjct: 174 DKKLE----GNSPQGSNQG 188
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 163 bits (412), Expect = 1e-40
Identities = 85/210 (40%), Positives = 130/210 (61%), Gaps = 19/210 (9%)
Query: 5 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 64
+YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + + + GK
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD--------GK 55
Query: 65 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124
K LQ+WDTAGQERFR++T++++R A G ++++D+T Q+S+ NV+ W+ ++ A E
Sbjct: 56 TIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SE 112
Query: 125 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 184
N + +L+GNK+DL ++ V+ A+E AD GIP+ ETSA NVE+A T+ I KR
Sbjct: 113 NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR 172
Query: 185 MEQCVEKTQIPDTVNGGNSGNLDGEKPPEK 214
M P +GG NL + P K
Sbjct: 173 MG--------PGAASGGERPNLKIDSTPVK 194
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 162 bits (411), Expect = 2e-40
Identities = 86/208 (41%), Positives = 133/208 (63%), Gaps = 28/208 (13%)
Query: 6 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 65
YD+L KLL +GDSGVGKT + R+ ++ FN +I+T+GIDF+ + V +
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGK--------- 55
Query: 66 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 125
K+ LQ+WDTAGQERF+++TTA++R AMG +L++D+T ++SF N++NWM ++ NA
Sbjct: 56 -KIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENA-SAG 113
Query: 126 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL-DLIMKR 184
+ +L+GNK D+ +R+V + QA +LA ++GI +FETSA + NV++A +L D+++K
Sbjct: 114 VERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS 173
Query: 185 MEQCVEKTQIPDTVNGGNSGNLDGEKPP 212
G SGN G KPP
Sbjct: 174 --------------GGRRSGN--GNKPP 185
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 161 bits (408), Expect = 4e-40
Identities = 86/208 (41%), Positives = 131/208 (62%), Gaps = 28/208 (13%)
Query: 6 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 65
YD+L KLL +GDSGVGKT + R+ ++ FN +I+T+GIDF+ + V +
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGK--------- 179
Query: 66 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 125
K+ LQ+WDTAGQERF+++TTA++R AMG +L +D+T ++SF N++NWM + NA
Sbjct: 180 -KIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENA-SAG 237
Query: 126 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL-DLIMKR 184
+ +L+GNK D+ +R+V + QA +LA ++GI +FETSA + NV++A +L D+++K
Sbjct: 238 VEHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS 297
Query: 185 MEQCVEKTQIPDTVNGGNSGNLDGEKPP 212
G SGN G KPP
Sbjct: 298 --------------GGRRSGN--GNKPP 309
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 161 bits (408), Expect = 4e-40
Identities = 86/208 (41%), Positives = 131/208 (62%), Gaps = 28/208 (13%)
Query: 6 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 65
YD+L KLL +GDSGVGKT + R+ ++ FN +I+T+GIDF+ + V +
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGK--------- 179
Query: 66 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 125
K+ LQ+WDTAGQERF+++TTA++R AMG +L +D+T ++SF N++NWM + NA
Sbjct: 180 -KIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENA-SAG 237
Query: 126 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL-DLIMKR 184
+ +L+GNK D+ +R+V + QA +LA ++GI +FETSA + NV++A +L D+++K
Sbjct: 238 VEHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS 297
Query: 185 MEQCVEKTQIPDTVNGGNSGNLDGEKPP 212
G SGN G KPP
Sbjct: 298 --------------GGRRSGN--GNKPP 309
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 161 bits (408), Expect = 4e-40
Identities = 86/208 (41%), Positives = 131/208 (62%), Gaps = 28/208 (13%)
Query: 6 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 65
YD+L KLL +GDSGVGKT + R+ ++ FN +I+T+GIDF+ + V +
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGK--------- 179
Query: 66 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 125
K+ LQ+WDTAGQERF+++TTA++R AMG +L +D+T ++SF N++NWM + NA
Sbjct: 180 -KIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENA-SAG 237
Query: 126 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL-DLIMKR 184
+ +L+GNK D+ +R+V + QA +LA ++GI +FETSA + NV++A +L D+++K
Sbjct: 238 VEHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKS 297
Query: 185 MEQCVEKTQIPDTVNGGNSGNLDGEKPP 212
G SGN G KPP
Sbjct: 298 --------------GGRRSGN--GNKPP 309
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 159 bits (403), Expect = 1e-39
Identities = 82/201 (40%), Positives = 129/201 (64%), Gaps = 11/201 (5%)
Query: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
M YD L KLL +GDSGVGKT L+R++D+ FN FI+T+GIDF+ K V +
Sbjct: 1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGK---- 56
Query: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
K+ LQ+WDTAGQERF ++TT+++R AMG +L++D+T+ +SF N+ W+ + +
Sbjct: 57 ------KIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH 110
Query: 121 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
A E+ + +L+GNK D+ D+R V + + ++A ++GI +FETSA N+EKA TL +
Sbjct: 111 AN-EDVERMLLGNKCDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAED 169
Query: 181 IMKRMEQCVEKTQIPDTVNGG 201
I+++ ++ D +GG
Sbjct: 170 ILRKTPVKEPNSENVDISSGG 190
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 157 bits (398), Expect = 5e-39
Identities = 76/189 (40%), Positives = 122/189 (64%), Gaps = 12/189 (6%)
Query: 5 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 64
DYD+L KLL +GDSGVGK++ L R+ DN F+ +ITT+G+DF+ + V N +
Sbjct: 4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE-------- 55
Query: 65 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124
KV LQ+WDTAGQERFR++T+ ++R G ++++D+TS +SF+NV+ W+ ++ N C+
Sbjct: 56 --KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CD 111
Query: 125 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 184
+ +L+GNK D P+++ V A + A + GI FETSA NVE+ + +L+++
Sbjct: 112 DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 171
Query: 185 MEQCVEKTQ 193
+ + K Q
Sbjct: 172 KKDNLAKQQ 180
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 157 bits (397), Expect = 7e-39
Identities = 83/211 (39%), Positives = 128/211 (60%), Gaps = 18/211 (8%)
Query: 5 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 64
+YDYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + + + GK
Sbjct: 7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD--------GK 58
Query: 65 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124
K LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W+ ++ A E
Sbjct: 59 TIK--LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SE 115
Query: 125 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 184
N + +L+GNK DL ++ V+ A+E AD GIP+ ETSA NVE++ T+ I KR
Sbjct: 116 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 175
Query: 185 MEQCVEKTQIPDTVNGGNSGNLDGEKPPEKK 215
M T G N+ + P K+
Sbjct: 176 MGPGA-------TAGGAEKSNVKIQSTPVKQ 199
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 148 bits (374), Expect = 3e-36
Identities = 78/169 (46%), Positives = 109/169 (64%), Gaps = 12/169 (7%)
Query: 6 YDYLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGK 64
YD K++ LGD+GVGKT FL ++ D F + FI TVGIDFR K V +
Sbjct: 26 YDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDG--------- 76
Query: 65 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124
+V LQ+WDTAGQERFRS+T A++RDA LL++D+T++ SF N+R W++++ A
Sbjct: 77 -VRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQ-R 134
Query: 125 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 173
+ I+L+GNKAD+ +R + LA +YG+P+ ETSA TG NVE A
Sbjct: 135 DVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELA 183
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 142 bits (359), Expect = 2e-34
Identities = 75/185 (40%), Positives = 118/185 (63%), Gaps = 11/185 (5%)
Query: 3 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 62
D +YDYL K++ +GDSGVGK+ L R+T N+FN + +T+G++F + + +
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-------- 56
Query: 63 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 122
GK K Q+WDTAGQER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ +A
Sbjct: 57 GKTIKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA- 113
Query: 123 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 182
N I+L+GNK+DL R V +AR A+K G+ + ETSA NVE A +T+L I
Sbjct: 114 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
Query: 183 KRMEQ 187
+ + Q
Sbjct: 174 RIVSQ 178
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 142 bits (358), Expect = 2e-34
Identities = 80/221 (36%), Positives = 130/221 (58%), Gaps = 18/221 (8%)
Query: 3 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 62
D +YDYL K++ +GDSGVGK+ L R+T N+FN + +T+G++F + + +
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-------- 56
Query: 63 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 122
GK K Q+WDTAGQER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ +A
Sbjct: 57 GKTIKA--QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA- 113
Query: 123 CENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 182
N I+L+GNK+DL R V +AR A+K + + ETSA NVE+A + +L I
Sbjct: 114 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 173
Query: 183 KRMEQCVEKTQIPDTVNGGNS-------GNLDGEKPPEKKC 216
+ + Q + + GN+ DG+KP + +C
Sbjct: 174 RIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQC 214
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 142 bits (357), Expect = 3e-34
Identities = 78/180 (43%), Positives = 112/180 (62%), Gaps = 12/180 (6%)
Query: 6 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGK 64
YD K++ +GDSGVGKT L R+ D F FI+TVGIDFR K V + G
Sbjct: 60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK--VLDVDG------- 110
Query: 65 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124
KV LQ+WDTAGQERFRS+T A++RDA LL++D+T++ SF N++ W++++ A
Sbjct: 111 -VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-H 168
Query: 125 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 184
+ ++L+GNK D +R V +LA +YG+P+ ETSA TG NV+ A + + +R
Sbjct: 169 DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQR 228
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 141 bits (356), Expect = 4e-34
Identities = 77/217 (35%), Positives = 126/217 (58%), Gaps = 11/217 (5%)
Query: 2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS 61
T+ DY+++ K++ +G+SGVGKT L R+T N+F+ TT+G++F + V+
Sbjct: 5 TEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA---- 60
Query: 62 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 121
V Q+WDTAG ER+R++T+A++R A+G LL+FDLT Q++ V W+ +L +A
Sbjct: 61 ------VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA 114
Query: 122 YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 181
++L+GNK+DL REV +AR A+ G+ + ETSA NVE A ET+L I
Sbjct: 115 EA-TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173
Query: 182 MKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218
++ + + + + + G++ P EK+ C
Sbjct: 174 FAKVSKQRQNSIRTNAITLGSAQAGQEPGPGEKRACC 210
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 139 bits (349), Expect = 2e-33
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 12/166 (7%)
Query: 9 LIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFK 67
L K + +GDSGVGKT+ L ++ KF P F TVGI F K V + +
Sbjct: 22 LHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDG----------VR 71
Query: 68 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 127
V LQ+WDTAGQERFRS+T A++RDA LL++D+T++ SF N+R W++++ A +
Sbjct: 72 VKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQ-RDVV 130
Query: 128 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 173
I+L+GNKAD+ +R + LA +YG+P+ ETSA TG NVE A
Sbjct: 131 IMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELA 176
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 137 bits (345), Expect = 7e-33
Identities = 75/195 (38%), Positives = 117/195 (60%), Gaps = 16/195 (8%)
Query: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
M+ DYD+L K++ +G++GVGKT + R+T F P T+G+DF K V N +
Sbjct: 1 MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE---- 56
Query: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
KV LQ+WDTAGQERFRS+T +++R A +L +D+T ++SF + W+ +++
Sbjct: 57 ------KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE-- 108
Query: 121 AYCENPDI-VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 179
Y N I VL+GNK DL ++REV++++A E ++ + Y ETSA NVEK LD
Sbjct: 109 QYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK---LFLD 165
Query: 180 LIMKRMEQCVEKTQI 194
L + + + + T +
Sbjct: 166 LACRLISEARQNTLV 180
>gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo
sapiens]
Length = 731
Score = 137 bits (344), Expect = 9e-33
Identities = 86/213 (40%), Positives = 125/213 (58%), Gaps = 26/213 (12%)
Query: 7 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRV-VYNAQGPNGSSGKA 65
D L K++ +G+S VGKT+FL R+ +++F+P TVGID+R K + V N+Q
Sbjct: 543 DRLFKIVFVGNSAVGKTSFLRRFCEDRFSPGMAATVGIDYRVKTLNVDNSQ--------- 593
Query: 66 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 125
V LQLWDTAGQER+R +T FFR A G ++M+DLT +QSFL+VR W+S ++ A +
Sbjct: 594 --VALQLWDTAGQERYRCITQQFFRKADGVIVMYDLTDKQSFLSVRRWLSSVE-EAVGDR 650
Query: 126 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 185
++L+GNK D +REV +LA + + ++E SA +G N + E+LL L
Sbjct: 651 VPVLLLGNKLDNEKEREVPRGLGEQLATENNLIFYECSAYSGHNTK---ESLLHLARFLK 707
Query: 186 EQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218
EQ E T DT+ G+ P +KK C
Sbjct: 708 EQ--EDTVREDTIQVGH--------PAKKKSCC 730
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 136 bits (343), Expect = 1e-32
Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 26/222 (11%)
Query: 8 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 67
Y +L+ +GDS VGK+ + R+T+ +F TVG+DF + V GK K
Sbjct: 7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP-------GKRIK 59
Query: 68 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 127
LQ+WDTAGQERFRS+T A++R+++G LL+FD+T+++SF NV W+ + + +
Sbjct: 60 --LQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIV 117
Query: 128 IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 187
VL+G+K DL QR+V +A +LA YG+ Y ETSA NVEKA L + + +
Sbjct: 118 FVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDL----TRDIYE 173
Query: 188 CVEKTQIPDTVNGGNSGNLDGEKP-----------PEKKCIC 218
V++ +I T+ G G G P E++C+C
Sbjct: 174 LVKRGEI--TIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC 213
>gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]
Length = 206
Score = 132 bits (333), Expect = 2e-31
Identities = 69/183 (37%), Positives = 114/183 (62%), Gaps = 15/183 (8%)
Query: 3 DGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 62
D D +K+L +G+SGVGK++ L R+TD+ F+P+ T+G+DF+ K + +
Sbjct: 2 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN------ 55
Query: 63 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 122
K L +WDTAGQERFR+LT +++R A G +L++D+T + +F+ + NW+++L+ Y
Sbjct: 56 ----KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE--TY 109
Query: 123 CENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
C DIV L+GNK D + REV+ + + A K+ + + E SA T V+ A E L++
Sbjct: 110 CTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK 168
Query: 181 IMK 183
I++
Sbjct: 169 IIQ 171
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 132 bits (331), Expect = 3e-31
Identities = 64/169 (37%), Positives = 109/169 (64%), Gaps = 11/169 (6%)
Query: 5 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 64
+Y Y+ K + +GD GVGK+ L+++T+ KF T+G++F + + + Q
Sbjct: 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-------- 58
Query: 65 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 124
K+ LQ+WDTAGQERFR++T +++R A G L+++D+T + ++ ++ +W++ + N
Sbjct: 59 --KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNP 115
Query: 125 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 173
N I+LIGNKADL QR+V +A++ A++ G+ + E SA TG+NVE A
Sbjct: 116 NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,073,868
Number of Sequences: 37866
Number of extensions: 311900
Number of successful extensions: 1343
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 252
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.