Guide to the Human Genome
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Name: YEATS4 Sequence: fasta or formatted (227aa) NCBI GI: 5729838
Description:

glioma-amplified sequence-41

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         12           2
 C cysteine            0.4          1           1
 D aspartate           4.4         10           2
 E glutamate          11.0         25           2
 F phenylalanine       5.3         12           2
 G glycine             5.3         12           2
 H histidine           2.2          5           1
 I isoleucine          6.2         14           3
 K lysine             11.0         25           3
 L leucine             7.5         17           2
 M methionine          3.1          7           2
 N asparagine          3.1          7           1
 P proline             4.0          9           2
 Q glutamine           3.5          8           2
 R arginine            5.3         12           1
 S serine              3.5          8           1
 T threonine           7.5         17           2
 V valine              6.2         14           2
 W tryptophan          0.9          2           1
 Y tyrosine            4.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glioma-amplified sequence-41 
YEATS2                0.143   YEATS domain containing 2 
MLLT3                 0.090   myeloid/lymphoid or mixed-lineage leukemia (trithor...
MLLT1                 0.083   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
BICD2                 0.032   bicaudal D homolog 2 isoform 1 
BICD2                 0.032   bicaudal D homolog 2 isoform 2 
LUZP2                 0.028   leucine zipper protein 2 
MYH10                 0.023   myosin, heavy polypeptide 10, non-muscle 
BICD1                 0.021   bicaudal D homolog 1 isoform 2 
BICD1                 0.021   bicaudal D homolog 1 isoform 1 
FMNL1                 0.018   formin-like 1 
CEP290                0.018   centrosomal protein 290kDa 
GBP6                  0.018   guanylate binding protein family, member 6 
JMY                   0.018   junction-mediating and regulatory protein 
TPM1                  0.016   tropomyosin 1 alpha chain isoform 4 
TPM1                  0.016   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.016   tropomyosin 1 alpha chain isoform 3 
TPM1                  0.016   tropomyosin 1 alpha chain isoform 5 
CKAP4                 0.016   cytoskeleton-associated protein 4 
LEKR1                 0.016   leucine, glutamate and lysine rich 1 
CDC42BPB              0.016   CDC42-binding protein kinase beta 
IQCE                  0.016   IQ motif containing E isoform 1 
IQCE                  0.016   IQ motif containing E isoform 2 
MYH15                 0.014   myosin, heavy polypeptide 15 
CCDC38                0.014   coiled-coil domain containing 38 
TPM4                  0.014   tropomyosin 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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