Guide to the Human Genome
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Name: BICD1 Sequence: fasta or formatted (835aa) NCBI GI: 51093830
Description:

bicaudal D homolog 1 isoform 2

Referenced in:

Coiled-Coil Proteins
Dynein and Dynactin

Other entries for this name:
alt prot [975aa] bicaudal D homolog 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         60           3
 C cysteine            0.5          4           1
 D aspartate           4.6         38           2
 E glutamate          13.4        112           3
 F phenylalanine       1.2         10           1
 G glycine             3.0         25           1
 H histidine           2.5         21           2
 I isoleucine          4.3         36           2
 K lysine              9.0         75           2
 L leucine            12.1        101           2
 M methionine          2.4         20           1
 N asparagine          4.8         40           2
 P proline             2.6         22           2
 Q glutamine           5.9         49           2
 R arginine            5.7         48           2
 S serine              6.7         56           2
 T threonine           6.3         53           2
 V valine              4.9         41           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.9         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bicaudal D homolog 1 isoform 2 
BICD1                 0.982   bicaudal D homolog 1 isoform 1 
BICD2                 0.599   bicaudal D homolog 2 isoform 1 
BICD2                 0.599   bicaudal D homolog 2 isoform 2 
GCC2                  0.049   GRIP and coiled-coil domain-containing 2 
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.049   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
NUMA1                 0.048   nuclear mitotic apparatus protein 1 
MYH9                  0.047   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.045   myosin, heavy polypeptide 10, non-muscle 
CCDC88A               0.043   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.043   coiled-coil domain containing 88A isoform 1 
EEA1                  0.042   early endosome antigen 1, 162kD 
GOLGA4                0.042   golgi autoantigen, golgin subfamily a, 4 
CROCC                 0.040   ciliary rootlet coiled-coil 
FILIP1                0.039   filamin A interacting protein 1 
CLIP1                 0.039   restin isoform a 
ERC1                  0.038   RAB6-interacting protein 2 isoform epsilon 
CENPE                 0.037   centromere protein E 
KIF15                 0.037   kinesin family member 15 
MYH6                  0.037   myosin heavy chain 6 
CENPF                 0.036   centromere protein F 
CLIP1                 0.036   restin isoform b 
CEP250                0.035   centrosomal protein 2 
FAM184A               0.035   hypothetical protein LOC79632 isoform 1 
SYCP1                 0.033   synaptonemal complex protein 1 
CCDC88C               0.033   DVL-binding protein DAPLE 
MYH3                  0.033   myosin, heavy chain 3, skeletal muscle, embryonic [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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