LGTN 33183

Name: LGTN	Sequence: fasta or formatted (584aa)		NCBI GI: 56699485
Description: ligatin		Referenced in: Additional Membrane Functions Translation Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.2 36 2 C cysteine 1.9 11 2 D aspartate 5.1 30 1 E glutamate 6.3 37 3 F phenylalanine 2.2 13 1 G glycine 6.3 37 2 H histidine 2.4 14 2 I isoleucine 4.3 25 2 K lysine 7.9 46 3 L leucine 12.2 71 3 M methionine 2.2 13 1 N asparagine 2.9 17 1 P proline 6.5 38 2 Q glutamine 6.3 37 2 R arginine 3.8 22 2 S serine 7.4 43 2 T threonine 5.8 34 2 V valine 6.8 40 2 W tryptophan 1.0 6 1 Y tyrosine 2.4 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 ligatin MCTS1 0.032 malignant T cell amplified sequence 1 isoform 1 [Homo... MCTS1 0.031 malignant T cell amplified sequence 1 isoform 2 [Ho... GUCY2F 0.008 guanylate cyclase 2F NEK1 0.007 NIMA-related kinase 1 CARD14 0.007 caspase recruitment domain protein 14 isoform 1 [Hom... FAM114A1 0.007 hypothetical protein LOC92689 SCN5A 0.007 voltage-gated sodium channel type V alpha isoform f... CCDC12 0.006 coiled-coil domain containing 12 OSBPL1A 0.006 oxysterol-binding protein-like 1A isoform A OSBPL1A 0.006 oxysterol-binding protein-like 1A isoform B MLLT6 0.006 myeloid/lymphoid or mixed-lineage leukemia (trithora... PSD4 0.006 pleckstrin and Sec7 domain containing 4 EPS15 0.005 epidermal growth factor receptor pathway substrate 15... HIBADH 0.005 3-hydroxyisobutyrate dehydrogenase NAALADL2 0.005 N-acetylated alpha-linked acidic dipeptidase 2 [Hom... ANK2 0.004 ankyrin 2 isoform 1 BEND6 0.004 BEN domain containing 6 RAI1 0.004 retinoic acid induced 1 CAPN8 0.004 calpain 8 PIK3C2A 0.004 phosphoinositide-3-kinase, class 2 alpha polypeptid... TCF20 0.004 transcription factor 20 isoform 2 TCF20 0.004 transcription factor 20 isoform 1 TCP10 0.004 t-complex 10 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.