Guide to the Human Genome
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Name: HIBADH Sequence: fasta or formatted (336aa) NCBI GI: 23308751
Description:

3-hydroxyisobutyrate dehydrogenase

Referenced in:

Amino Acid Catabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         40           3
 C cysteine            2.1          7           1
 D aspartate           4.5         15           1
 E glutamate           4.2         14           3
 F phenylalanine       3.6         12           1
 G glycine            10.7         36           2
 H histidine           0.6          2           1
 I isoleucine          5.1         17           2
 K lysine              6.0         20           2
 L leucine             9.2         31           2
 M methionine          5.1         17           2
 N asparagine          4.2         14           2
 P proline             4.2         14           1
 Q glutamine           2.4          8           1
 R arginine            3.6         12           2
 S serine              9.2         31           2
 T threonine           3.9         13           2
 V valine              6.5         22           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   3-hydroxyisobutyrate dehydrogenase 
N-PAC                 0.133   cytokine-like nuclear factor n-pac 
PGD                   0.024   phosphogluconate dehydrogenase 
ALDH5A1               0.013   aldehyde dehydrogenase 5A1 isoform 2 precursor 
ALDH5A1               0.011   aldehyde dehydrogenase 5A1 isoform 1 precursor [Homo...
LGTN                  0.009   ligatin 
SH3RF1                0.009   SH3 domain containing ring finger 1 
CTBP1                 0.008   C-terminal binding protein 1 isoform 2 
CTBP1                 0.008   C-terminal binding protein 1 isoform 1 
CTBP2                 0.008   C-terminal binding protein 2 isoform 1 
CTBP2                 0.008   C-terminal binding protein 2 isoform 1 
CTBP2                 0.008   C-terminal binding protein 2 isoform 2 
SLC2A10               0.008   solute carrier family 2 member 10 
FAM118B               0.008   hypothetical protein LOC79607 
SPEF2                 0.006   KPL2 protein isoform 1 
ASAP3                 0.005   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
ASAP3                 0.005   ArfGAP with SH3 domain, ankyrin repeat and PH domain...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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