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Search of human proteins with 56699409
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
(391 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 818 0.0
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 768 0.0
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 768 0.0
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 567 e-162
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 350 2e-96
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 350 2e-96
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 349 2e-96
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 349 2e-96
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 349 2e-96
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 349 3e-96
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 305 6e-83
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 244 1e-64
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 244 1e-64
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ... 189 4e-48
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 122 7e-28
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 103 3e-22
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 98 1e-20
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 98 1e-20
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 87 3e-17
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 87 3e-17
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 87 3e-17
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 87 3e-17
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 85 1e-16
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 83 5e-16
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 83 5e-16
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 80 3e-15
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 77 2e-14
gi|9558733 transformer-2 alpha [Homo sapiens] 77 3e-14
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 75 1e-13
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 74 2e-13
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 818 bits (2113), Expect = 0.0
Identities = 391/391 (100%), Positives = 391/391 (100%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP 360
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP 360
Query: 361 RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY
Sbjct: 361 RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 768 bits (1984), Expect = 0.0
Identities = 372/391 (95%), Positives = 375/391 (95%), Gaps = 1/391 (0%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEADRPGKLFIGGLNTETNEKALE VFGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPRG GRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGP PKRSAPSG VRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
Query: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
AP+SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
YTYRDYGHSSSRDDYPSRGY DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAP TRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP 360
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS DRVGRQERGLPPS+ERGYP
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS-CDRVGRQERGLPPSVERGYPSS 359
Query: 361 RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
RDSYSSSSRGAPRG G GGSRSDRGGGRSRY
Sbjct: 360 RDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 768 bits (1984), Expect = 0.0
Identities = 372/391 (95%), Positives = 375/391 (95%), Gaps = 1/391 (0%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEADRPGKLFIGGLNTETNEKALE VFGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPRG GRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGP PKRSAPSG VRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
Query: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
AP+SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
YTYRDYGHSSSRDDYPSRGY DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAP TRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP 360
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS DRVGRQERGLPPS+ERGYP
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS-CDRVGRQERGLPPSVERGYPSS 359
Query: 361 RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
RDSYSSSSRGAPRG G GGSRSDRGGGRSRY
Sbjct: 360 RDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 567 bits (1462), Expect = e-162
Identities = 291/396 (73%), Positives = 314/396 (79%), Gaps = 9/396 (2%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEADRPGKLFIGGLN ET+EKALEA FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
DAK AARDMNGKSLDGKAIKV QATKP+FES RRG PPPPRSRG PR LRG RGG GG R
Sbjct: 61 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSS-SGMGG 179
PSRGG DDGGY+ +F++ SR P+P+KRGPPPR GPPPKR+APSGP RSS GM G
Sbjct: 120 RSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRG 179
Query: 180 RAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR 239
RA RGRD Y GPPRREPLP RRD YL PRD+GYS++D YSSRDY R+ R +AP P
Sbjct: 180 RALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDY---REPRGFAPSPG 236
Query: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPPTR 298
+YT+RDYGHSS RDD P RGYSDRDGY GRDRDY DH S GS+R+ +ESYG R A P R
Sbjct: 237 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGR 296
Query: 299 GPPPSYGGSSRYDDYSS-SRDGYGGSRDSYSSS--RSDLYSSGRDRVGRQERGLPPSMER 355
G PPSYGG RY++Y S D Y G RDSYSSS RSD YS GR RVGR +RGL SMER
Sbjct: 297 GTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMER 356
Query: 356 GYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
G PP RDSYS S PRGGGR G R +RGGGRSRY
Sbjct: 357 GCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 350 bits (897), Expect = 2e-96
Identities = 201/373 (53%), Positives = 244/373 (65%), Gaps = 21/373 (5%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+SG RR PP R+R P LR RG SGGT
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 178
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGPPPK+SAPS RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTR 298
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD YG+SR
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRD----YGHSRRDESYS 290
Query: 299 GPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGY 357
++ S +Y+ G+ G RD S R + YS G R P S E R Y
Sbjct: 291 RGYRNHRSSRETREYAPPSRGH-GYRDYGHSRRHESYSRG-------YRNHPSSRETRDY 342
Query: 358 PPPRDSYSSSSRG 370
PP Y+ G
Sbjct: 343 APPHRDYAYRDYG 355
Score = 178 bits (451), Expect = 9e-45
Identities = 126/277 (45%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R PP + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PVSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG ++ R PSR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGYS DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
PP RGP SYGGS+ + YS++RD YG S +SYSS D + R+ V R+++ PPS+
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLG 461
Query: 355 RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
R P PR++Y SSS A G G SRS++G SRY
Sbjct: 462 RVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 350 bits (897), Expect = 2e-96
Identities = 201/373 (53%), Positives = 244/373 (65%), Gaps = 21/373 (5%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+SG RR PP R+R P LR RG SGGT
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 178
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGPPPK+SAPS RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTR 298
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD YG+SR
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRD----YGHSRRDESYS 290
Query: 299 GPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGY 357
++ S +Y+ G+ G RD S R + YS G R P S E R Y
Sbjct: 291 RGYRNHRSSRETREYAPPSRGH-GYRDYGHSRRHESYSRG-------YRNHPSSRETRDY 342
Query: 358 PPPRDSYSSSSRG 370
PP Y+ G
Sbjct: 343 APPHRDYAYRDYG 355
Score = 178 bits (451), Expect = 9e-45
Identities = 126/277 (45%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R PP + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PVSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG ++ R PSR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGYS DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
PP RGP SYGGS+ + YS++RD YG S +SYSS D + R+ V R+++ PPS+
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLG 461
Query: 355 RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
R P PR++Y SSS A G G SRS++G SRY
Sbjct: 462 RVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 349 bits (896), Expect = 2e-96
Identities = 207/383 (54%), Positives = 246/383 (64%), Gaps = 41/383 (10%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+SG RR PP R+R P LR RG GGT
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 178
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGPPPK+SAPS RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPPTRG-PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERG 348
N RS+ TR PPS G Y DY SR R + YS G R
Sbjct: 295 NRRSSRETREYAPPSRGHG--YRDYGHSR-------------RHESYSRG-------YRN 332
Query: 349 LPPSME-RGYPPPRDSYSSSSRG 370
P S E R Y PP Y+ G
Sbjct: 333 HPSSRETRDYAPPHRDYAYRDYG 355
Score = 173 bits (439), Expect = 2e-43
Identities = 126/277 (45%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R PP + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PVSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGYS DGYG RD+S+H SG SYRD+ + YG + A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGA 403
Query: 295 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
PP RGP SYGGS+ + YS++RD YG S +SYSS D + R+ V R+++ PPS+
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLG 461
Query: 355 RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
R P PR++ SSS A G G SRS++G SRY
Sbjct: 462 RVLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 349 bits (896), Expect = 2e-96
Identities = 207/383 (54%), Positives = 246/383 (64%), Gaps = 41/383 (10%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+SG RR PP R+R P LR RG GGT
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 178
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGPPPK+SAPS RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPPTRG-PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERG 348
N RS+ TR PPS G Y DY SR R + YS G R
Sbjct: 295 NRRSSRETREYAPPSRGHG--YRDYGHSR-------------RHESYSRG-------YRN 332
Query: 349 LPPSME-RGYPPPRDSYSSSSRG 370
P S E R Y PP Y+ G
Sbjct: 333 HPSSRETRDYAPPHRDYAYRDYG 355
Score = 178 bits (451), Expect = 9e-45
Identities = 128/277 (46%), Positives = 160/277 (57%), Gaps = 20/277 (7%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R PP + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PVSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGYS DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
PP RGP SYGGS+ + YS++RD YG S +SYSS D + R+ V R+++ PPS+
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLG 461
Query: 355 RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
R P PR++Y SSS A G G SRS++G SRY
Sbjct: 462 RVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 349 bits (896), Expect = 2e-96
Identities = 207/383 (54%), Positives = 246/383 (64%), Gaps = 41/383 (10%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+SG RR PP R+R P LR RG GGT
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 178
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGPPPK+SAPS RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPPTRG-PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERG 348
N RS+ TR PPS G Y DY SR R + YS G R
Sbjct: 295 NRRSSRETREYAPPSRGHG--YRDYGHSR-------------RHESYSRG-------YRN 332
Query: 349 LPPSME-RGYPPPRDSYSSSSRG 370
P S E R Y PP Y+ G
Sbjct: 333 HPSSRETRDYAPPHRDYAYRDYG 355
Score = 174 bits (442), Expect = 9e-44
Identities = 127/277 (45%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R PP + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PVSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGYS DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
PP RGP SYGGS+ + YS++RD YG S +SYSS D + R+ V R+++ PPS+
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLG 461
Query: 355 RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
R P PR++ SSS A G G SRS++G SRY
Sbjct: 462 RVLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 349 bits (895), Expect = 3e-96
Identities = 207/383 (54%), Positives = 245/383 (63%), Gaps = 41/383 (10%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+SG RR PP R+R P LR RG GGT
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 178
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGPPPK+SAPS RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPPTRG-PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERG 348
N RS+ TR PPS G Y DY SR R + YS G R
Sbjct: 295 NRRSSRETREYAPPSRGHG--YRDYGHSR-------------RHESYSRG-------YRN 332
Query: 349 LPPSME-RGYPPPRDSYSSSSRG 370
P S E R Y PP Y+ G
Sbjct: 333 HPSSRETRDYAPPHRDYAYRDYG 355
Score = 174 bits (442), Expect = 9e-44
Identities = 127/277 (45%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R PP + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PVSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGYS DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
PP RGP SYGGS+ + YS++RD YG S +SYSS D + R+ V R+++ PPS+
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLG 461
Query: 355 RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
R P PR++ SSS A G G SRS++G SRY
Sbjct: 462 RVLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 305 bits (780), Expect = 6e-83
Identities = 202/447 (45%), Positives = 239/447 (53%), Gaps = 66/447 (14%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
M+EADRP KLFIGGLN +T+EKAL+A FGKYG I++V LMKDR+TNKSRGFAFVTFESPA
Sbjct: 1 MMEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
DAK AARDMNGK LDGKAI V Q KP+F+S R PP P S R RGG +
Sbjct: 61 DAKAAARDMNGKYLDGKAIMVAQTIKPAFKSS-RWVPPTPGSGSRSRFSHRTRGGGSSPQ 119
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRS-GGPPPKRSAPSGPVRS-SSGMG 178
PPS+G D GY+ F++ R P+P KRGPPPR PP KR+ PS S GM
Sbjct: 120 RPPSQGRPDDGRGYAGYFDLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGCGMR 179
Query: 179 GRAPVSRGRDSY--------GGPPRREPLPSRRDVYLSPRDDGYSTK-------DSYSS- 222
G+AP G+D Y GPP + +P R G K D YS
Sbjct: 180 GKAPTVSGQDGYSGLQPRRWAGPPHKRAVP--RSSLARIGGSGMPGKAPAVWGQDGYSGP 237
Query: 223 ---RDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGY-GRDRDYSDHPSG 278
P RD D+ P RDY+ R YGHSS D P RG +++GY GRD +Y+DHPS
Sbjct: 238 RVREPLPPCRDPGDFVPALRDYSRRYYGHSSVPDYRPLRGDGNQNGYRGRDHEYTDHPSK 297
Query: 279 GSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSS----------------------- 315
GSYR+ +SYG A P G PPSYGG RY++Y
Sbjct: 298 GSYREPLKSYGGPCGAAPVWGTPPSYGGGCRYEEYQGNSPDACSEGRSSEALPVVLPDAY 357
Query: 316 SRD----GYGGSRDSYSS--SRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSR 369
SRD Y G R S S+ SRSD Y G + + RG P G R+S S+S
Sbjct: 358 SRDHSPKAYSGGRSSSSNGYSRSDRY--GEEGCYEEYRGRSPDAHSG---GRNSSSNSYG 412
Query: 370 GAPRGGG-------RGGSRSDRGGGRS 389
+ GG RG S R GGRS
Sbjct: 413 QSHHYGGEGRYEEYRGRSHEARSGGRS 439
Score = 126 bits (316), Expect = 4e-29
Identities = 118/335 (35%), Positives = 144/335 (42%), Gaps = 45/335 (13%)
Query: 88 SFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMD--DGGYSMNFNMSSSRG 145
S ++ G P S G R R G GG R RG +D GG S N + S G
Sbjct: 747 SLDANSSGRLPDAYSGGHDSSSRSHRYGGGG-RYEEYRGRSLDANSGGRSPN---AYSGG 802
Query: 146 PLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAP--VSRGRDS----------YGGP 193
R P R GG + S S GG +P S GRDS YGG
Sbjct: 803 HNSSSRNDPCRGGGRYEENRGHSLDANS----GGHSPNAYSGGRDSSSNSYDRSHRYGGG 858
Query: 194 PRREPLPSR-RDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSR 252
E R D + R + D Y+ Y RD+ + D+ YG
Sbjct: 859 GHYEEYRGRSHDTHSRGRSPDAHSGDHYTEA-YSRGRDSFSNSYGRSDH----YGRGGCY 913
Query: 253 DDYPSRGYSDRDGYGRDRDYSDHPSGGSYR----DSYESY---------GNSRSAPPTRG 299
++Y R + G GR + S++ G S+R YE Y G S+ + G
Sbjct: 914 EEYQGRSPNAYGG-GRGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAHSGGRDSSIKSYG 972
Query: 300 PPPSYGGSSRYDDYSSSR-DGYGGSRDSYSSS--RSDLYSSGRDRVGRQERGLPPSMERG 356
YGG Y++Y S D Y G D S+S RSD YS GRDRVGR +RGLP ME G
Sbjct: 973 LSDRYGGGGHYEEYQGSLPDAYSGDHDRSSNSYGRSDRYSRGRDRVGRPDRGLPLPMETG 1032
Query: 357 YPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
PP DSYS S PRGGGR G R +RG GRSRY
Sbjct: 1033 SPPLHDSYSRSGCRVPRGGGRQGGRFERGEGRSRY 1067
Score = 47.0 bits (110), Expect = 3e-05
Identities = 104/408 (25%), Positives = 138/408 (33%), Gaps = 45/408 (11%)
Query: 13 GGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGK 72
GG N+ +N +G GR E + R + DA D +
Sbjct: 402 GGRNSSSNSYGQSHHYGGEGRYEEYRGRSHEARSGGRSTDAHSRGRSDDAYSGGHDSSSW 461
Query: 73 S-LDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMD- 130
S G + E+ S ++ G P S G R G GG +RG +D
Sbjct: 462 SDCCGGGGRYEEYQGRSLDANSGGCSPEAYSGGHDNSSWSDRYGVGG-HYEENRGHSLDA 520
Query: 131 -DGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPP------KRSAPSGPVRSSSGMGGRAPV 183
GG S + + S G R GG A SG + + GG
Sbjct: 521 NSGGRSPDTH-SGGHSSSSNSYGQSHRYGGEGRYEYRGRSHDAHSGGCSADAYSGGHDSS 579
Query: 184 SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTY 243
S+ + YGG E R + G + ++YS + SS + Y R Y
Sbjct: 580 SQS-NRYGGGGCYEEYRGRS----LDANSGGRSPNAYSG-GHDSSSWSHRYGGGGRYEEY 633
Query: 244 R----DYGHSSSRDDYPSRGYSDRD------GYGRDRDYS----DHPSGGSYRDSYESYG 289
R D D S G+ G GR +Y D SGG D+Y S G
Sbjct: 634 RGRSLDANSGGRSPDAYSGGHDSSGQSNCYGGGGRYEEYRGRLLDANSGGRSPDAY-SGG 692
Query: 290 NSRSAPPTRGPPPSYGGSSRYDDYSS-SRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERG 348
+ S+ R YGG RY++Y S D G R + SR SS D G R
Sbjct: 693 HDSSSQSNR-----YGGGGRYEEYRGHSLDANSGGRSPDTYSRGHDSSSQSDHYGGGGRS 747
Query: 349 LPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRG-------GGRS 389
L + P SS + R GG G RG GGRS
Sbjct: 748 LDANSSGRLPDAYSGGHDSSSRSHRYGGGGRYEEYRGRSLDANSGGRS 795
Score = 47.0 bits (110), Expect = 3e-05
Identities = 82/290 (28%), Positives = 105/290 (36%), Gaps = 78/290 (26%)
Query: 116 SGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPP--PRSGGPPPKRSAPSGPVRS 173
SGG GGH D+ +S + + G RG SGG P SG S
Sbjct: 483 SGGCSPEAYSGGH-DNSSWSDRYGVG---GHYEENRGHSLDANSGGRSP--DTHSGGHSS 536
Query: 174 SSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRD 233
SS G++ YGG R E D + G + D+YS SS+ R
Sbjct: 537 SSNSYGQS------HRYGGEGRYEYRGRSHDAH-----SGGCSADAYSGGHDSSSQSNR- 584
Query: 234 YAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRS 293
YG ++Y R D SGG ++Y S G+ S
Sbjct: 585 ------------YGGGGCYEEYRGRSL-------------DANSGGRSPNAY-SGGHDSS 618
Query: 294 APPTRGPPPSYGGSSRYDDYSS----------SRDGYGGSRDSYSSSRSDLYSSGRDRVG 343
+ R YGG RY++Y S D Y G DS S +S+ Y G G
Sbjct: 619 SWSHR-----YGGGGRYEEYRGRSLDANSGGRSPDAYSGGHDS--SGQSNCYGGG----G 667
Query: 344 RQE--RGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
R E RG G P D+YS GG S+S+R GG RY
Sbjct: 668 RYEEYRGRLLDANSGGRSP-DAYS--------GGHDSSSQSNRYGGGGRY 708
Score = 46.2 bits (108), Expect = 5e-05
Identities = 88/313 (28%), Positives = 111/313 (35%), Gaps = 58/313 (18%)
Query: 106 PRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
P+ GGR S R G ++G Y RG R P SGG R+
Sbjct: 363 PKAYSGGRSSSSNGYSRSDRYG--EEGCYE------EYRG-----RSPDAHSGG----RN 405
Query: 166 APSGPVRSSSGMGG--RAPVSRGRDSY---GGPPRREPLPSRRDVYLSPRDDGYSTKDSY 220
+ S S GG R RGR GG R D S D S D
Sbjct: 406 SSSNSYGQSHHYGGEGRYEEYRGRSHEARSGGRSTDAHSRGRSDDAYSGGHDSSSWSDCC 465
Query: 221 SS----RDYPS-SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYG----RDRD 271
+Y S D P Y+ GH +S +SDR G G +R
Sbjct: 466 GGGGRYEEYQGRSLDANSGGCSPEAYSG---GHDNS-------SWSDRYGVGGHYEENRG 515
Query: 272 YS-DHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGG--SRDSY- 327
+S D SGG D++ G S+ + G YGG RY+ S D + G S D+Y
Sbjct: 516 HSLDANSGGRSPDTHS--GGHSSSSNSYGQSHRYGGEGRYEYRGRSHDAHSGGCSADAYS 573
Query: 328 ----SSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGG------- 376
SSS+S+ Y G + R L + P SS + R GG
Sbjct: 574 GGHDSSSQSNRYGGGGCYEEYRGRSLDANSGGRSPNAYSGGHDSSSWSHRYGGGGRYEEY 633
Query: 377 RGGSRSDRGGGRS 389
RG S GGRS
Sbjct: 634 RGRSLDANSGGRS 646
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 244 bits (622), Expect = 1e-64
Identities = 120/131 (91%), Positives = 123/131 (93%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
M EADR GK FIGGLNTETN+KALEAVFGKYG+IVEV LMKD ETNKSRGFAF+TFE PA
Sbjct: 1 MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR LRGGRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
Query: 121 GPPSRGGHMDD 131
PPSRGGHMDD
Sbjct: 121 EPPSRGGHMDD 131
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 244 bits (622), Expect = 1e-64
Identities = 120/131 (91%), Positives = 123/131 (93%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
M EADR GK FIGGLNTETN+KALEAVFGKYG+IVEV LMKD ETNKSRGFAF+TFE PA
Sbjct: 1 MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR LRGGRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
Query: 121 GPPSRGGHMDD 131
PPSRGGHMDD
Sbjct: 121 EPPSRGGHMDD 131
>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
Length = 196
Score = 189 bits (480), Expect = 4e-48
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP 360
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRD+VGRQERGLPPSMERGYPPP
Sbjct: 106 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPP 165
Query: 361 RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
RDSYSSSSRG PRGGGRGGSRSDRGGGRSRY
Sbjct: 166 RDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
Score = 38.5 bits (88), Expect = 0.011
Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 178 GGRAPV------SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK-DSYSSRDYPSSRD 230
G R P+ +R SYGG R + S RD Y RD S++ D YSS R
Sbjct: 91 GNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQ 150
Query: 231 TRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGS 280
R P + G+ RD Y S G GR SD G S
Sbjct: 151 ERGLPPS------MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRS 194
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 122 bits (305), Expect = 7e-28
Identities = 76/145 (52%), Positives = 91/145 (62%), Gaps = 15/145 (10%)
Query: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPP 123
DA MNGKS+DG+ I+V+QA K S RSRG G GGRG G RG
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS----------DNRSRGYRGGSAGGRGFFRGGRGRG 111
Query: 124 ---SRGGHMDDGGYSMNFNMSSSRG 145
SRGG D GY N S S G
Sbjct: 112 RGFSRGG--GDRGYGGNRFESRSGG 134
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/45 (51%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 244 RDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESY 288
R G+ SRD Y SR S YSD SGGSYRDSY+SY
Sbjct: 131 RSGGYGGSRDYYSSRSQSG--------GYSDRSSGGSYRDSYDSY 167
Score = 31.6 bits (70), Expect = 1.3
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSY 327
R R Y +GG + G R +RG G +R++ S GYGGSRD Y
Sbjct: 89 RSRGYRGGSAGGR---GFFRGGRGRGRGFSRGGGDRGYGGNRFESRSG---GYGGSRDYY 142
Query: 328 SS-SRSDLYS 336
SS S+S YS
Sbjct: 143 SSRSQSGGYS 152
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 103 bits (256), Expect = 3e-22
Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
GKLF+GGLN T+E+ALE F +G I EV+++KDRET +SRGF F+TF +P A A R
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSR-G 126
MNG+SLDG+ I+V+ A K + G RG RG GG G G R SR G
Sbjct: 66 AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
Query: 127 GHMDDGGYSMNFNMSSSRG 145
G+ G S ++N + G
Sbjct: 124 GYGYGYGRSRDYNGRNQGG 142
Score = 36.6 bits (83), Expect = 0.040
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 245 DYGHSSSRDDYPSRGYSDRDGYGRDRDYS-------DHPSGGSYRDSYES 287
D G+ S R Y SR GYGR RDY+ D SGG+YRD+Y++
Sbjct: 109 DQGYGSGRY-YDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN 157
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 97.8 bits (242), Expect = 1e-20
Identities = 122/402 (30%), Positives = 142/402 (35%), Gaps = 75/402 (18%)
Query: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
V D+ G+ F +TN+K + + Y D++T K +G A V+F+ P
Sbjct: 242 VSTDQVGEFFKQIGIIKTNKKTGKPMINLY---------TDKDTGKPKGEATVSFDDPPS 292
Query: 62 AKDAARDMNGKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
AK A +GK G IKV AT +P F G G G R GRGG G
Sbjct: 293 AKAAIDWFDGKEFHGNIIKVSFATRRPEFMRG-----------GGSGGGRRGRGGYRGRG 341
Query: 121 GPPSRGGHMDDGGY--------SMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVR 172
G RGG G + +MNF +R + P P+ S PSG
Sbjct: 342 GFQGRGGDPKSGDWVCPNPSCGNMNF----------ARRNSCNQCNEPRPEDSRPSGGDF 391
Query: 173 SSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTR 232
G GG RGR GG R Y R G D S Y R
Sbjct: 392 RGRGYGGERGY-RGRGGRGGD---------RGGYGGDRSGGGYGGDRSSGGGYSGDRSGG 441
Query: 233 DYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSR 292
Y D + YG RG GYG DR GG Y YG R
Sbjct: 442 GYG---GDRSGGGYGGDRGGGYGGDRG----GGYGGDR-------GGGYGGDRGGYGGDR 487
Query: 293 SAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPS 352
G YGG Y R GYGG R Y RS G DR G G
Sbjct: 488 GG-GYGGDRGGYGGDR--GGYGGDRGGYGGDRGGYGGDRS-RGGYGGDRGGGS--GYGGD 541
Query: 353 MERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRG---GGRSRY 391
GY R S G RGGG GG R G GGR+ Y
Sbjct: 542 RSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGGRNDY 580
Score = 46.2 bits (108), Expect = 5e-05
Identities = 51/196 (26%), Positives = 70/196 (35%), Gaps = 25/196 (12%)
Query: 206 YLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSR-----DDYPSRGY 260
Y +P GY +S+ Y T D + Y YG S S+ ++ Y
Sbjct: 20 YGNPGSQGYGQ----ASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYGGYENQKQSSY 75
Query: 261 SDR--DGYGRDRDYSDHPSGGSYRDSYES--YGNSRSAPPTRGPPPSYGGSSRYDDYSSS 316
S + + G+ ++ S G SY+ YG S G G +Y
Sbjct: 76 SQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQ 135
Query: 317 RDGYGGSRDSYSSSRSDLYSSGRD------RVGRQERGLPPSMERGYPPPRDSYSSSSRG 370
D Y ++ SY S R + +D R G RG S +G R Y RG
Sbjct: 136 HDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGS--QGGGRGRGGYDKDGRG 193
Query: 371 APRGGGRGGSRSDRGG 386
P G GG DRGG
Sbjct: 194 -PMTGSSGG---DRGG 205
Score = 43.1 bits (100), Expect = 4e-04
Identities = 65/287 (22%), Positives = 96/287 (33%), Gaps = 53/287 (18%)
Query: 112 GRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPL------PVKRGPPPRSGGPPPKRS 165
G G G S G D Y N++ SS G + P
Sbjct: 24 GSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYGGYENQKQSSYSQQPYNNQ 83
Query: 166 APSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDY 225
+ SS GGRAP S + YG + D Y + Y
Sbjct: 84 GQQQNMESSGSQGGRAP-SYDQPDYG------------------QQDSYDQQSGYDQHQ- 123
Query: 226 PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR---DGYGRD-RDYSDHPSGGSY 281
S + +Y Y+ + S R++Y DR YG D R Y GG
Sbjct: 124 GSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRG 183
Query: 282 RDSYESYGNSRSAPPTRGPPPSYGGSSR--YDDYSSSRDGYGGSRD----SYSSSRSDLY 335
R Y+ G RGP G R + ++ RD YG D S +S + ++
Sbjct: 184 RGGYDKDG--------RGPMTGSSGGDRGGFKNFGGHRD-YGPRTDADSESDNSDNNTIF 234
Query: 336 SSG------RDRVGR--QERGLPPSMERGYPPPRDSYSSSSRGAPRG 374
G D+VG ++ G+ + ++ P + Y+ G P+G
Sbjct: 235 VQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKG 281
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 97.8 bits (242), Expect = 1e-20
Identities = 122/402 (30%), Positives = 142/402 (35%), Gaps = 75/402 (18%)
Query: 2 VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
V D+ G+ F +TN+K + + Y D++T K +G A V+F+ P
Sbjct: 245 VSTDQVGEFFKQIGIIKTNKKTGKPMINLY---------TDKDTGKPKGEATVSFDDPPS 295
Query: 62 AKDAARDMNGKSLDGKAIKVEQAT-KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
AK A +GK G IKV AT +P F G G G R GRGG G
Sbjct: 296 AKAAIDWFDGKEFHGNIIKVSFATRRPEFMRG-----------GGSGGGRRGRGGYRGRG 344
Query: 121 GPPSRGGHMDDGGY--------SMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVR 172
G RGG G + +MNF +R + P P+ S PSG
Sbjct: 345 GFQGRGGDPKSGDWVCPNPSCGNMNF----------ARRNSCNQCNEPRPEDSRPSGGDF 394
Query: 173 SSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTR 232
G GG RGR GG R Y R G D S Y R
Sbjct: 395 RGRGYGGERGY-RGRGGRGGD---------RGGYGGDRSGGGYGGDRSSGGGYSGDRSGG 444
Query: 233 DYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSR 292
Y D + YG RG GYG DR GG Y YG R
Sbjct: 445 GYG---GDRSGGGYGGDRGGGYGGDRG----GGYGGDR-------GGGYGGDRGGYGGDR 490
Query: 293 SAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPS 352
G YGG Y R GYGG R Y RS G DR G G
Sbjct: 491 GG-GYGGDRGGYGGDR--GGYGGDRGGYGGDRGGYGGDRS-RGGYGGDRGGGS--GYGGD 544
Query: 353 MERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRG---GGRSRY 391
GY R S G RGGG GG R G GGR+ Y
Sbjct: 545 RSGGYGGDR---SGGGYGGDRGGGYGGDRGGYGGKMGGRNDY 583
Score = 46.6 bits (109), Expect = 4e-05
Identities = 51/199 (25%), Positives = 68/199 (34%), Gaps = 28/199 (14%)
Query: 206 YLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR-- 263
Y +P GY +S+ Y T D + Y YG S S GY ++
Sbjct: 20 YGNPGSQGYGQ----ASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQ 75
Query: 264 --------DGYGRDRDYSDHPSGGSYRDSYES--YGNSRSAPPTRGPPPSYGGSSRYDDY 313
+ G+ ++ S G SY+ YG S G G +Y
Sbjct: 76 SSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNY 135
Query: 314 SSSRDGYGGSRDSYSSSRSDLYSSGRD------RVGRQERGLPPSMERGYPPPRDSYSSS 367
D Y ++ SY S R + +D R G RG S +G R Y
Sbjct: 136 DQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGS--QGGGRGRGGYDKD 193
Query: 368 SRGAPRGGGRGGSRSDRGG 386
RG P G GG DRGG
Sbjct: 194 GRG-PMTGSSGG---DRGG 208
Score = 44.7 bits (104), Expect = 1e-04
Identities = 68/292 (23%), Positives = 99/292 (33%), Gaps = 60/292 (20%)
Query: 112 GRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGG-----------P 160
G G G S G D Y N++ SS G + G GG
Sbjct: 24 GSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQS--QSGYSQSYGGYENQKQSSYSQQ 81
Query: 161 PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSY 220
P + SS GGRAP S + YG + D Y + Y
Sbjct: 82 PYNNQGQQQNMESSGSQGGRAP-SYDQPDYG------------------QQDSYDQQSGY 122
Query: 221 SSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDR---DGYGRD-RDYSDHP 276
S + +Y Y+ + S R++Y DR YG D R Y
Sbjct: 123 DQHQ-GSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQ 181
Query: 277 SGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSR--YDDYSSSRDGYGGSRD----SYSSS 330
GG R Y+ G RGP G R + ++ RD YG D S +S
Sbjct: 182 GGGRGRGGYDKDG--------RGPMTGSSGGDRGGFKNFGGHRD-YGPRTDADSESDNSD 232
Query: 331 RSDLYSSG------RDRVGR--QERGLPPSMERGYPPPRDSYSSSSRGAPRG 374
+ ++ G D+VG ++ G+ + ++ P + Y+ G P+G
Sbjct: 233 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKG 284
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 86.7 bits (213), Expect = 3e-17
Identities = 82/255 (32%), Positives = 104/255 (40%), Gaps = 59/255 (23%)
Query: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296
Query: 70 NGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPRGLRGGRG 114
NGK ++G+ I++ A P + R PPPR P RG RG G
Sbjct: 297 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRG-RGRGG 355
Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
G GG PP RGG+ D D GY++ RG P
Sbjct: 356 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415
Query: 149 VKRG---PPPRSGGPPPKRSAPSGPVRSS-SGMGGRAPVSRGRDSYGGPPRREPLPSRRD 204
RG PPPR +R AP GP R S G GG A RGR S G R +
Sbjct: 416 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 470
Query: 205 VYLSPRDDGYSTKDS 219
V + DGY+ DS
Sbjct: 471 VGGKRKADGYNQPDS 485
Score = 58.2 bits (139), Expect = 1e-08
Identities = 48/134 (35%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG------------PPPSYGGSSRYDDYSS 315
++R + S + + Y + R PP RG PP YG YDDY
Sbjct: 319 KERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYG 378
Query: 316 S--RDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGYPPPRDSYSSSSRGAP 372
D GG D Y GR GR RG PP RG PPPR S RGAP
Sbjct: 379 YDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 437
Query: 373 RGGGRGGSRSDRGG 386
G R GSR RGG
Sbjct: 438 LGPPR-GSRGGRGG 450
Score = 43.9 bits (102), Expect = 3e-04
Identities = 53/160 (33%), Positives = 59/160 (36%), Gaps = 35/160 (21%)
Query: 234 YAPPPR-DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSR 292
Y PPPR R G R Y GY D YG + DY D G Y D Y +
Sbjct: 338 YHPPPRMPPPIRGRGRGGGRGGY---GYPP-DYYGYE-DYYDDYYGYDYHDYRGGYED-- 390
Query: 293 SAPPTRGPPPSYGGSSRYDDYSS--SRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLP 350
P YG YDD + R G G R + R R R G +RG P
Sbjct: 391 ---------PYYG----YDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 437
Query: 351 PSMERGYPPPRDSYSSSSRGAP----RGGGRGGSRSDRGG 386
RG S RG P RG G GSR +RGG
Sbjct: 438 LGPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 469
Score = 37.7 bits (86), Expect = 0.018
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
++F+G + + E L +F K G I ++ LM D + ++RG+AF+TF A++A +
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
Score = 32.0 bits (71), Expect = 0.98
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 9 KLFIGGL-NTETNEKALEA---VFGKYGRIVEVLLM-KDRETNKSRGFAFVTFESPADAK 63
+LF+G + +T E LE V G +V+V+L + + K+RGF F+ +E A
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 205
Query: 64 DAARD-MNGK-SLDGKAIKVEQA 84
A R M+GK + G + VE A
Sbjct: 206 QARRRLMSGKVKVWGNVVTVEWA 228
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 86.7 bits (213), Expect = 3e-17
Identities = 82/255 (32%), Positives = 104/255 (40%), Gaps = 59/255 (23%)
Query: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 346 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 397
Query: 70 NGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPRGLRGGRG 114
NGK ++G+ I++ A P + R PPPR P RG RG G
Sbjct: 398 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRG-RGRGG 456
Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
G GG PP RGG+ D D GY++ RG P
Sbjct: 457 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 516
Query: 149 VKRG---PPPRSGGPPPKRSAPSGPVRSS-SGMGGRAPVSRGRDSYGGPPRREPLPSRRD 204
RG PPPR +R AP GP R S G GG A RGR S G R +
Sbjct: 517 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 571
Query: 205 VYLSPRDDGYSTKDS 219
V + DGY+ DS
Sbjct: 572 VGGKRKADGYNQPDS 586
Score = 58.2 bits (139), Expect = 1e-08
Identities = 48/134 (35%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG------------PPPSYGGSSRYDDYSS 315
++R + S + + Y + R PP RG PP YG YDDY
Sbjct: 420 KERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYG 479
Query: 316 S--RDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGYPPPRDSYSSSSRGAP 372
D GG D Y GR GR RG PP RG PPPR S RGAP
Sbjct: 480 YDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 538
Query: 373 RGGGRGGSRSDRGG 386
G R GSR RGG
Sbjct: 539 LGPPR-GSRGGRGG 551
Score = 43.9 bits (102), Expect = 3e-04
Identities = 53/160 (33%), Positives = 59/160 (36%), Gaps = 35/160 (21%)
Query: 234 YAPPPR-DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSR 292
Y PPPR R G R Y GY D YG + DY D G Y D Y +
Sbjct: 439 YHPPPRMPPPIRGRGRGGGRGGY---GYPP-DYYGYE-DYYDDYYGYDYHDYRGGYED-- 491
Query: 293 SAPPTRGPPPSYGGSSRYDDYSS--SRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLP 350
P YG YDD + R G G R + R R R G +RG P
Sbjct: 492 ---------PYYG----YDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 538
Query: 351 PSMERGYPPPRDSYSSSSRGAP----RGGGRGGSRSDRGG 386
RG S RG P RG G GSR +RGG
Sbjct: 539 LGPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 570
Score = 37.7 bits (86), Expect = 0.018
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
++F+G + + E L +F K G I ++ LM D + ++RG+AF+TF A++A +
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224
Score = 32.0 bits (71), Expect = 0.98
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 9 KLFIGGL-NTETNEKALEA---VFGKYGRIVEVLLM-KDRETNKSRGFAFVTFESPADAK 63
+LF+G + +T E LE V G +V+V+L + + K+RGF F+ +E A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 306
Query: 64 DAARD-MNGK-SLDGKAIKVEQA 84
A R M+GK + G + VE A
Sbjct: 307 QARRRLMSGKVKVWGNVVTVEWA 329
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 86.7 bits (213), Expect = 3e-17
Identities = 82/255 (32%), Positives = 104/255 (40%), Gaps = 59/255 (23%)
Query: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293
Query: 70 NGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPRGLRGGRG 114
NGK ++G+ I++ A P + R PPPR P RG RG G
Sbjct: 294 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRG-RGRGG 352
Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
G GG PP RGG+ D D GY++ RG P
Sbjct: 353 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412
Query: 149 VKRG---PPPRSGGPPPKRSAPSGPVRSS-SGMGGRAPVSRGRDSYGGPPRREPLPSRRD 204
RG PPPR +R AP GP R S G GG A RGR S G R +
Sbjct: 413 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 467
Query: 205 VYLSPRDDGYSTKDS 219
V + DGY+ DS
Sbjct: 468 VGGKRKADGYNQPDS 482
Score = 58.2 bits (139), Expect = 1e-08
Identities = 48/134 (35%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG------------PPPSYGGSSRYDDYSS 315
++R + S + + Y + R PP RG PP YG YDDY
Sbjct: 316 KERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYG 375
Query: 316 S--RDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGYPPPRDSYSSSSRGAP 372
D GG D Y GR GR RG PP RG PPPR S RGAP
Sbjct: 376 YDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 434
Query: 373 RGGGRGGSRSDRGG 386
G R GSR RGG
Sbjct: 435 LGPPR-GSRGGRGG 447
Score = 43.9 bits (102), Expect = 3e-04
Identities = 53/160 (33%), Positives = 59/160 (36%), Gaps = 35/160 (21%)
Query: 234 YAPPPR-DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSR 292
Y PPPR R G R Y GY D YG + DY D G Y D Y +
Sbjct: 335 YHPPPRMPPPIRGRGRGGGRGGY---GYPP-DYYGYE-DYYDDYYGYDYHDYRGGYED-- 387
Query: 293 SAPPTRGPPPSYGGSSRYDDYSS--SRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLP 350
P YG YDD + R G G R + R R R G +RG P
Sbjct: 388 ---------PYYG----YDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 434
Query: 351 PSMERGYPPPRDSYSSSSRGAP----RGGGRGGSRSDRGG 386
RG S RG P RG G GSR +RGG
Sbjct: 435 LGPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 466
Score = 37.7 bits (86), Expect = 0.018
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
++F+G + + E L +F K G I ++ LM D + ++RG+AF+TF A++A +
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
Score = 32.3 bits (72), Expect = 0.75
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 9 KLFIGGL-NTETNEKALEAVFGKYGRIVEVLLM-KDRETNKSRGFAFVTFESPADAKDAA 66
+LF+G + +T E LE +V+V+L + + K+RGF F+ +E A A
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205
Query: 67 RD-MNGK-SLDGKAIKVEQA 84
R M+GK + G + VE A
Sbjct: 206 RRLMSGKVKVWGNVVTVEWA 225
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 86.7 bits (213), Expect = 3e-17
Identities = 82/255 (32%), Positives = 104/255 (40%), Gaps = 59/255 (23%)
Query: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394
Query: 70 NGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPRGLRGGRG 114
NGK ++G+ I++ A P + R PPPR P RG RG G
Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRG-RGRGG 453
Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
G GG PP RGG+ D D GY++ RG P
Sbjct: 454 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 513
Query: 149 VKRG---PPPRSGGPPPKRSAPSGPVRSS-SGMGGRAPVSRGRDSYGGPPRREPLPSRRD 204
RG PPPR +R AP GP R S G GG A RGR S G R +
Sbjct: 514 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 568
Query: 205 VYLSPRDDGYSTKDS 219
V + DGY+ DS
Sbjct: 569 VGGKRKADGYNQPDS 583
Score = 58.2 bits (139), Expect = 1e-08
Identities = 48/134 (35%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG------------PPPSYGGSSRYDDYSS 315
++R + S + + Y + R PP RG PP YG YDDY
Sbjct: 417 KERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYG 476
Query: 316 S--RDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGYPPPRDSYSSSSRGAP 372
D GG D Y GR GR RG PP RG PPPR S RGAP
Sbjct: 477 YDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 535
Query: 373 RGGGRGGSRSDRGG 386
G R GSR RGG
Sbjct: 536 LGPPR-GSRGGRGG 548
Score = 43.9 bits (102), Expect = 3e-04
Identities = 53/160 (33%), Positives = 59/160 (36%), Gaps = 35/160 (21%)
Query: 234 YAPPPR-DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSR 292
Y PPPR R G R Y GY D YG + DY D G Y D Y +
Sbjct: 436 YHPPPRMPPPIRGRGRGGGRGGY---GYPP-DYYGYE-DYYDDYYGYDYHDYRGGYED-- 488
Query: 293 SAPPTRGPPPSYGGSSRYDDYSS--SRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLP 350
P YG YDD + R G G R + R R R G +RG P
Sbjct: 489 ---------PYYG----YDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 535
Query: 351 PSMERGYPPPRDSYSSSSRGAP----RGGGRGGSRSDRGG 386
RG S RG P RG G GSR +RGG
Sbjct: 536 LGPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 567
Score = 37.7 bits (86), Expect = 0.018
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
++F+G + + E L +F K G I ++ LM D + ++RG+AF+TF A++A +
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224
Score = 32.3 bits (72), Expect = 0.75
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 9 KLFIGGL-NTETNEKALEAVFGKYGRIVEVLLM-KDRETNKSRGFAFVTFESPADAKDAA 66
+LF+G + +T E LE +V+V+L + + K+RGF F+ +E A A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 67 RD-MNGK-SLDGKAIKVEQA 84
R M+GK + G + VE A
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA 326
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 84.7 bits (208), Expect = 1e-16
Identities = 82/309 (26%), Positives = 122/309 (39%), Gaps = 48/309 (15%)
Query: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
+ K+F+GG+ E L F K+G + EV+++ D E + RGF F+TFE + D
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQ 169
Query: 66 ARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSR 125
A +M+ + GK ++V++A +S + P P S+ R + G G P +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPR--DSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227
Query: 126 GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSR 185
G+ G + GP P RG PP PPP P S+ GG P
Sbjct: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPP----PPP----PFTSYIVSTPPGGFPPPQG 279
Query: 186 GRDSYGGPPRRE----PLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDTRDYAPPPR 239
YG PP+ P P D + P + + P S+ D + PP
Sbjct: 280 FPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPP- 338
Query: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 299
+++ D+P Y GYG+D +G S P +
Sbjct: 339 ----------TAQPDFP---YGQYAGYGQD---------------LSGFGQGFSDPSQQ- 369
Query: 300 PPPSYGGSS 308
PPSYGG S
Sbjct: 370 -PPSYGGPS 377
Score = 73.6 bits (179), Expect = 3e-13
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
AD GKLF+GGL+ T ++ L + F +YG +V+ ++MKD+ TN+SRGF FV F+ P
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP---- 61
Query: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRG-PPRGLRGGRGGSGGTRGP 122
+ A++P GR P P RG P R G G R
Sbjct: 62 -------------NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSD 108
Query: 123 PSRGGHMDDGGYSMN 137
S+ + GG N
Sbjct: 109 NSKSNKIFVGGIPHN 123
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 82.8 bits (203), Expect = 5e-16
Identities = 66/189 (34%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
L + L T+ L VF KYGR+ +V + +DR T +SRGFAFV F DA+DA M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 70 NGKSLDGKAIKVEQA---TKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRG 126
+G LDG+ ++V+ A P RRGPPP R G GG G P R
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPP----------RRYGGGGYGRRSRSPRRR 125
Query: 127 GHMDDGGYSMNFNMSSSRGPLPVKRG-PPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSR 185
S + + S SR R RS RSA +SSS R+ SR
Sbjct: 126 RRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSR-SR 184
Query: 186 GRDSYGGPP 194
R PP
Sbjct: 185 SRSRSRSPP 193
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 82.8 bits (203), Expect = 5e-16
Identities = 92/293 (31%), Positives = 113/293 (38%), Gaps = 55/293 (18%)
Query: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
L + L T+ +L VF KYGR+ +V + ++ T RGFAFV F DA+DA M
Sbjct: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
Query: 70 NGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSR-GPPRGLRGGRGGSGGTRGPPSRGGH 128
+G LDG+ ++V+ A R G PRSR G PRG SRG
Sbjct: 76 DGAELDGRELRVQVA--------RYGRRDLPRSRQGEPRG--------------RSRG-- 111
Query: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRD 188
GGY R P +R RS GP RS R S R+P SR
Sbjct: 112 ---GGYGRRSRSYGRRSRSP-RRRHRSRSRGPSCSRSRSRSRYRGS--RYSRSPYSRSPY 165
Query: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
S R P R Y R G YSS Y +SR +R ++ H
Sbjct: 166 SRS---RYSRSPYSRSRYRESRYGG----SHYSSSGYSNSRYSRYHS---------SRSH 209
Query: 249 SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPP 301
S S SR S R S S S SRS+ TR PP
Sbjct: 210 SKSGSSTSSRSASTSKSSSARRSKSSSVS--------RSRSRSRSSSMTRSPP 254
Score = 38.1 bits (87), Expect = 0.014
Identities = 38/112 (33%), Positives = 41/112 (36%), Gaps = 9/112 (8%)
Query: 278 GGSYRDSYESYGNSRSAPP------TRGPPPSYGGS-SRYDDYSSSRDGYGGSRDSYSSS 330
GG Y SYG +P +RGP S S SRY SR Y SR YS S
Sbjct: 111 GGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPY--SRSPYSRS 168
Query: 331 RSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRS 382
R R R G GY R S SSR + G SRS
Sbjct: 169 RYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRS 220
Score = 35.0 bits (79), Expect = 0.12
Identities = 61/183 (33%), Positives = 73/183 (39%), Gaps = 32/183 (17%)
Query: 202 RRDVYLSPRDD--GYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYG----HSSSRDDY 255
RRD+ S + + G S Y R R +R P R + R G S SR Y
Sbjct: 94 RRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRS---PRRRHRSRSRGPSCSRSRSRSRY 150
Query: 256 PSRGYS----DRDGYGRDRDYSDHP-SGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRY 310
YS R Y R R YS P S YR+S YG S + S +SRY
Sbjct: 151 RGSRYSRSPYSRSPYSRSR-YSRSPYSRSRYRES--RYGGSHYS-------SSGYSNSRY 200
Query: 311 DDYSSSR--DGYGGSRDSYSSSRSDLYSSGRDR---VGR-QERGLPPSMERGYPPPRDSY 364
Y SSR G S S S+S S S+ R + V R + R SM R PPR S
Sbjct: 201 SRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSMTRS--PPRVSK 258
Query: 365 SSS 367
S
Sbjct: 259 RKS 261
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 80.1 bits (196), Expect = 3e-15
Identities = 72/263 (27%), Positives = 106/263 (40%), Gaps = 20/263 (7%)
Query: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
+ K+F+GG+ E L F K+G + EV+++ D E + RGF F+TFE + D
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQ 169
Query: 66 ARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSR 125
A +M+ + GK ++V++A +S + P P S+ R + G G P +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPR--DSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227
Query: 126 GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSR 185
G+ G + GP P RG PP PPP P S+ GG P
Sbjct: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPP----PPP----PFTSYIVSTPPGGFPPPQG 279
Query: 186 GRDSYGGPPRRE----PLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDTRDYAPPPR 239
YG PP+ P P D + P + + P S+ D + PP
Sbjct: 280 FPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPT 339
Query: 240 ---DYTYRDYGHSSSRDDYPSRG 259
D+ Y YG S P G
Sbjct: 340 AQPDFPYGQYGLGSYSPAPPGCG 362
Score = 73.6 bits (179), Expect = 3e-13
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
AD GKLF+GGL+ T ++ L + F +YG +V+ ++MKD+ TN+SRGF FV F+ P
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP---- 61
Query: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRG-PPRGLRGGRGGSGGTRGP 122
+ A++P GR P P RG P R G G R
Sbjct: 62 -------------NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSD 108
Query: 123 PSRGGHMDDGGYSMN 137
S+ + GG N
Sbjct: 109 NSKSNKIFVGGIPHN 123
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 77.4 bits (189), Expect = 2e-14
Identities = 89/324 (27%), Positives = 120/324 (37%), Gaps = 74/324 (22%)
Query: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
K+F+GG+ +T E L F KYG+I + +M+DR++ K RGFAFVTF+ D D
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVV 185
Query: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGH 128
+++G +V++A +S G RG GG G G RGG+
Sbjct: 186 QKYHTINGHNCEVKKALSKQ----------EMQSAGSQRGRGGGSGNFMG------RGGN 229
Query: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRD 188
GG NF + G G GG R + G +G GG
Sbjct: 230 FGGGG--GNFGRGGNFG------GRGGYGGGGGGSRGSYGGGDGGYNGFGGDG------G 275
Query: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
+YGG P GYS++ Y P YG
Sbjct: 276 NYGGGP------------------GYSSRGGYGG------------GGPGYGNQGGGYGG 305
Query: 249 SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYES-YGNSRSAPPTRGPPPSYGGS 307
D Y G YG +Y+D G+Y +S YG P +G S+GG
Sbjct: 306 GGGYDGYNEGGNFGGGNYGGGGNYNDF---GNYSGQQQSNYG------PMKG--GSFGGR 354
Query: 308 SRYDDYSSSRDGYGGSRDSYSSSR 331
S Y G GG Y S R
Sbjct: 355 SSGSPYGGGY-GSGGGSGGYGSRR 377
Score = 60.5 bits (145), Expect = 3e-09
Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
E ++ KLFIGGL+ ET + +L F K+G + + ++M+D +T +SRGF FVT+ S +
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY-SCVEE 88
Query: 63 KDAARDMNGKSLDGKAIKVEQA 84
DAA +DG+ ++ ++A
Sbjct: 89 VDAAMCARPHKVDGRVVEPKRA 110
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 76.6 bits (187), Expect = 3e-14
Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
L + GL+ T E+ L VF +YG + V ++ D+ T +SRGFAFV FE D+K+A
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 70 NGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHM 129
NG LDG+ I+V+ + + R P P G P GG GG GG G GG
Sbjct: 181 NGMELDGRRIRVDYSI-----TKRAHTPTPGIYMGRPTHSGGGGGGGGG--GGGGGGGRR 233
Query: 130 DDGGYSMNFNMSSSR 144
D Y ++ R
Sbjct: 234 RDSYYDRGYDRGYDR 248
Score = 37.7 bits (86), Expect = 0.018
Identities = 55/228 (24%), Positives = 82/228 (35%), Gaps = 29/228 (12%)
Query: 171 VRSSSGMGGRAP--VSRGRDSYGGPPRREPLPSRRDV---YLSPRDDGYSTKDSYSSRDY 225
V+S S G R+P VS+ +S+ + SRR Y R +S + SR Y
Sbjct: 28 VKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRSRSY 87
Query: 226 -PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDS 284
P R R + P R G ++ D G Y +RD R+
Sbjct: 88 TPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDL---------REV 138
Query: 285 YESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSR-DSYSSSRSDLY-SSGRDRV 342
+ YG P G + YD + G+ + S+ + ++G +
Sbjct: 139 FSRYG------------PLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELD 186
Query: 343 GRQERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSR 390
GR+ R +R + P Y + GGG GG GGGR R
Sbjct: 187 GRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRR 234
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 75.1 bits (183), Expect = 1e-13
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 27/140 (19%)
Query: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
L + GL+ T E+ L VF KYG I +V ++ D+++ +SRGFAFV FE+ DAK+A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 70 NGKSLDGKAIKVEQAT--------------KPSFESGRRGPPPPPRSRGPPRG------- 108
NG LDG+ I+V+ + +P++ S RR RG RG
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR---RDYYDRGYDRGYDDRDYY 236
Query: 109 ---LRGGRGGSGGTRGPPSR 125
RGG GG GG R R
Sbjct: 237 SRSYRGGGGGGGGWRAAQDR 256
Score = 34.7 bits (78), Expect = 0.15
Identities = 48/148 (32%), Positives = 53/148 (35%), Gaps = 37/148 (25%)
Query: 205 VYLSPRDDGYSTKDSYSSRDYPSSR-------DTRDYAPPPRDYTYRDYGHSSSRDDYPS 257
VY DD K+ + + R R + P P Y R SS R DY
Sbjct: 164 VYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYD 223
Query: 258 RGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPP------TRGPPPSYGGSSRYD 311
RGY DR GY DRDY SYR G R+A R P P Y
Sbjct: 224 RGY-DR-GYD-DRDYYSR----SYRGGGGGGGGWRAAQDRDQIYRRRSPSPYY------- 269
Query: 312 DYSSSRDGYGGSRDSYSSSRSDLYSSGR 339
SR GY S SRS YS R
Sbjct: 270 ----SRGGY------RSRSRSRSYSPRR 287
Score = 29.6 bits (65), Expect = 4.9
Identities = 63/249 (25%), Positives = 81/249 (32%), Gaps = 48/249 (19%)
Query: 164 RSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYS-- 221
+SA P RS S R S+ R R S R Y R S + S S
Sbjct: 28 KSARHTPARSRSKEDSRRSRSKSRSR--SESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS 85
Query: 222 -SRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSD------ 274
SRDY R ++ P R G+ ++ D G Y +RD +
Sbjct: 86 YSRDY---RRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYG 142
Query: 275 -------------HPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRD--- 318
S G +E+ +++ A G R D + R
Sbjct: 143 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTP 202
Query: 319 --GYGGSRDSYSSSRS-DLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPRGG 375
G R +Y SSR D Y G DR GY RD YS S RG GG
Sbjct: 203 TPGIYMGRPTYGSSRRRDYYDRGYDR--------------GYDD-RDYYSRSYRGGGGGG 247
Query: 376 GRGGSRSDR 384
G + DR
Sbjct: 248 GGWRAAQDR 256
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 74.3 bits (181), Expect = 2e-13
Identities = 70/212 (33%), Positives = 92/212 (43%), Gaps = 31/212 (14%)
Query: 3 EADRPG------KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTF 56
++ RPG K+F+GG+ +T E L F +YG+I + +M DR + K RGFAFVTF
Sbjct: 94 DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
Query: 57 ESPADAKDAA-----RDMNGKSLD-GKAI-KVEQATKPSFESGRRGPPPPPRSRGPPRGL 109
+ D+ D +NG + + KA+ K E A+ S + GR G RG G
Sbjct: 154 DD-HDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGG 212
Query: 110 R---------GGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGP 160
GRGG GG+RG GG D GY+ N G G P SGG
Sbjct: 213 NDNFGRGGNFSGRGGFGGSRGGGGYGGSGD--GYNGFGNDGGYGG------GGPGYSGGS 264
Query: 161 PPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGG 192
S G SG GG + GG
Sbjct: 265 RGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGG 296
Score = 60.8 bits (146), Expect = 2e-09
Identities = 29/82 (35%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
E ++ KLFIGGL+ ET +++L + F ++G + + ++M+D T +SRGF FVT+ + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY-ATVEE 67
Query: 63 KDAARDMNGKSLDGKAIKVEQA 84
DAA + +DG+ ++ ++A
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRA 89
Score = 42.7 bits (99), Expect = 6e-04
Identities = 42/143 (29%), Positives = 53/143 (37%), Gaps = 14/143 (9%)
Query: 259 GYSDRDGYGRDRDYSDHPS------GGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYDD 312
G+ D +GR ++S GG Y S + Y + G P Y G SR
Sbjct: 209 GFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSR--G 266
Query: 313 YSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRD----SYSSSS 368
Y S GYG Y S S Y S + G G S G D + SS+
Sbjct: 267 YGSGGQGYGNQGSGYGGSGS--YDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSN 324
Query: 369 RGAPRGGGRGGSRSDRGGGRSRY 391
G +GG GG S GG +Y
Sbjct: 325 FGPMKGGNFGGRSSGPYGGGGQY 347
Score = 29.3 bits (64), Expect = 6.4
Identities = 30/107 (28%), Positives = 36/107 (33%), Gaps = 18/107 (16%)
Query: 289 GNSRSAPPTRGPPPSYGGSSRYDDYS--SSRDGYGGSRDS--YSSSRSDLYSSGRDRVGR 344
G S S G +GG+ + S R G+GGSR Y S G D
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDG--- 251
Query: 345 QERGLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
GY YS SRG GG G++ GG Y
Sbjct: 252 -----------GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSY 287
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,041,293
Number of Sequences: 37866
Number of extensions: 1684897
Number of successful extensions: 19497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 1129
Number of HSP's that attempted gapping in prelim test: 9862
Number of HSP's gapped (non-prelim): 6862
length of query: 391
length of database: 18,247,518
effective HSP length: 104
effective length of query: 287
effective length of database: 14,309,454
effective search space: 4106813298
effective search space used: 4106813298
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.