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Search of human proteins with 56606125
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56606125 hypothetical protein LOC201725 [Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56606125 hypothetical protein LOC201725 [Homo sapiens] 228 1e-60
gi|169209609 PREDICTED: hypothetical protein [Homo sapiens] 205 7e-54
gi|169210596 PREDICTED: hypothetical protein [Homo sapiens] 205 7e-54
gi|169210141 PREDICTED: hypothetical protein [Homo sapiens] 202 5e-53
gi|19924103 synapsin II isoform IIa [Homo sapiens] 38 0.002
gi|19924101 synapsin II isoform IIb [Homo sapiens] 38 0.002
gi|47778931 SMAD, mothers against DPP homolog 5 [Homo sapiens] 36 0.006
gi|47778929 SMAD, mothers against DPP homolog 5 [Homo sapiens] 36 0.006
gi|47778925 SMAD, mothers against DPP homolog 5 [Homo sapiens] 36 0.006
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 36 0.006
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 36 0.006
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 36 0.006
gi|39812378 RAN binding protein 9 [Homo sapiens] 35 0.010
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|60460889 Myb protein P42POP [Homo sapiens] 35 0.017
gi|189217895 KH domain-containing, RNA-binding, signal transduct... 35 0.017
gi|32307177 forkhead box G1 [Homo sapiens] 35 0.017
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 34 0.029
gi|116268095 spermatid maturation 1 [Homo sapiens] 34 0.029
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 33 0.037
gi|215272354 protein phosphatase 3, catalytic subunit, beta isof... 33 0.037
gi|215272352 protein phosphatase 3, catalytic subunit, beta isof... 33 0.037
gi|11036640 protein phosphatase 3, catalytic subunit, beta isofo... 33 0.037
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 33 0.037
gi|110431370 espin [Homo sapiens] 33 0.037
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 33 0.037
gi|239735596 transmembrane protein 171 isoform 1 [Homo sapiens] 33 0.049
gi|239735594 transmembrane protein 171 isoform 2 [Homo sapiens] 33 0.049
gi|224591414 low density lipoprotein receptor class A domain con... 33 0.049
gi|110349719 titin isoform N2-A [Homo sapiens] 33 0.049
>gi|56606125 hypothetical protein LOC201725 [Homo sapiens]
Length = 113
Score = 228 bits (580), Expect = 1e-60
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI
Sbjct: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
Query: 61 GDAAFSLTKLLEATSAVSAQVEELAFKCTENARFLKTWRDLLKEGYDSLKPDD 113
GDAAFSLTKLLEATSAVSAQVEELAFKCTENARFLKTWRDLLKEGYDSLKPDD
Sbjct: 61 GDAAFSLTKLLEATSAVSAQVEELAFKCTENARFLKTWRDLLKEGYDSLKPDD 113
>gi|169209609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 205 bits (521), Expect = 7e-54
Identities = 105/113 (92%), Positives = 106/113 (93%), Gaps = 1/113 (0%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
MADPE+LQVSSPPPPPPS PSSSDASAAS PG PVSLGWPVPSRSSG TVD LEEVELQI
Sbjct: 1 MADPEKLQVSSPPPPPPS-PSSSDASAASYPGSPVSLGWPVPSRSSGRTVDPLEEVELQI 59
Query: 61 GDAAFSLTKLLEATSAVSAQVEELAFKCTENARFLKTWRDLLKEGYDSLKPDD 113
GDAAFSLTKLLEATSAVSAQVEELAFKCTE ARFLKTWRDL KEGYDSLKPDD
Sbjct: 60 GDAAFSLTKLLEATSAVSAQVEELAFKCTEKARFLKTWRDLWKEGYDSLKPDD 112
>gi|169210596 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 205 bits (521), Expect = 7e-54
Identities = 105/113 (92%), Positives = 106/113 (93%), Gaps = 1/113 (0%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
MADPE+LQVSSPPPPPPS PSSSDASAAS PG PVSLGWPVPSRSSG TVD LEEVELQI
Sbjct: 1 MADPEKLQVSSPPPPPPS-PSSSDASAASYPGSPVSLGWPVPSRSSGRTVDPLEEVELQI 59
Query: 61 GDAAFSLTKLLEATSAVSAQVEELAFKCTENARFLKTWRDLLKEGYDSLKPDD 113
GDAAFSLTKLLEATSAVSAQVEELAFKCTE ARFLKTWRDL KEGYDSLKPDD
Sbjct: 60 GDAAFSLTKLLEATSAVSAQVEELAFKCTEKARFLKTWRDLWKEGYDSLKPDD 112
>gi|169210141 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 202 bits (514), Expect = 5e-53
Identities = 104/113 (92%), Positives = 105/113 (92%), Gaps = 1/113 (0%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
MADPE+LQVSSPPPPPPS PSSSDASAAS PG PVSLGWPVPSRSSG TVD LEEV LQI
Sbjct: 1 MADPEKLQVSSPPPPPPS-PSSSDASAASYPGSPVSLGWPVPSRSSGRTVDPLEEVGLQI 59
Query: 61 GDAAFSLTKLLEATSAVSAQVEELAFKCTENARFLKTWRDLLKEGYDSLKPDD 113
GDAAFSLTKLLEATSAVSAQVEELAFKCTE ARFLKTWRDL KEGYDSLKPDD
Sbjct: 60 GDAAFSLTKLLEATSAVSAQVEELAFKCTEKARFLKTWRDLWKEGYDSLKPDD 112
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
M D + + PPPPPP P ++ ASAA P P P+ + P V
Sbjct: 23 MTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSV---- 78
Query: 61 GDAAF-SLTKLLEATSAVSAQVE 82
G + F SL++ ++ T+A + V+
Sbjct: 79 GSSFFSSLSQAVKQTAASAGLVD 101
Score = 33.9 bits (76), Expect = 0.029
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSS 46
P L PP SS SSS +SA PGGP + G PS SS
Sbjct: 474 PRRLPPGPSLPPSSSSSSSSSSSAPQRPGGPTTHG-DAPSSSS 515
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 14 PPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDAAFSLTKLLEA 73
PP PS P SS +S++SS P R GPT GDA S + L EA
Sbjct: 478 PPGPSLPPSSSSSSSSSSS--------APQRPGGPTTH---------GDAPSSSSSLAEA 520
Query: 74 TSAVSA 79
++A
Sbjct: 521 QPPLAA 526
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
M D + + PPPPPP P ++ ASAA P P P+ + P V
Sbjct: 23 MTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSV---- 78
Query: 61 GDAAF-SLTKLLEATSAVSAQVE 82
G + F SL++ ++ T+A + V+
Sbjct: 79 GSSFFSSLSQAVKQTAASAGLVD 101
>gi|47778931 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDA 63
P L +SP PP P+S + ++ A+S PG P L P + P DQ+ + Q D
Sbjct: 184 PFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDT 243
Query: 64 AFSLTKLLEATSAVSAQVEELAFK 87
+ ++ + S S V+ +A++
Sbjct: 244 SNNMIPQI-MPSISSRDVQPVAYE 266
>gi|47778929 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDA 63
P L +SP PP P+S + ++ A+S PG P L P + P DQ+ + Q D
Sbjct: 184 PFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDT 243
Query: 64 AFSLTKLLEATSAVSAQVEELAFK 87
+ ++ + S S V+ +A++
Sbjct: 244 SNNMIPQI-MPSISSRDVQPVAYE 266
>gi|47778925 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDA 63
P L +SP PP P+S + ++ A+S PG P L P + P DQ+ + Q D
Sbjct: 184 PFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDT 243
Query: 64 AFSLTKLLEATSAVSAQVEELAFK 87
+ ++ + S S V+ +A++
Sbjct: 244 SNNMIPQI-MPSISSRDVQPVAYE 266
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 36.2 bits (82), Expect = 0.006
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 12 PPPPPPSSPSSSDASAASSPGGPV 35
PPPPPP +P + +SSPG PV
Sbjct: 835 PPPPPPLAPQKASGGGSSSPGSPV 858
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 12 PPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
PPPPPP SPGG S +P SS D+ EE E+ +
Sbjct: 700 PPPPPPPLAQHPHHRGLLSPGG-TSCSYP-SEDSSEDEDDEEEEQEVDV 746
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 11 SPPPPPPSSPSSSDASAASSPGG 33
S PPPP S DA S PGG
Sbjct: 542 SGPPPPAGGAGSRDALFESPPGG 564
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 36.2 bits (82), Expect = 0.006
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 12 PPPPPPSSPSSSDASAASSPGGPV 35
PPPPPP +P + +SSPG PV
Sbjct: 835 PPPPPPLAPQKASGGGSSSPGSPV 858
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 11 SPPPPPPSSPSSSDASAASSPGG 33
S PPPP S DA S PGG
Sbjct: 542 SGPPPPAGGAGSRDALFESPPGG 564
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 12 PPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
PPPPPP SPGG S +P SS D+ EE E+ +
Sbjct: 700 PPPPPPPLAQHPHHRGLLSPGG-TSCCYP-SEDSSEDEDDEEEEQEVDV 746
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 36.2 bits (82), Expect = 0.006
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 12 PPPPPPSSPSSSDASAASSPGGPV 35
PPPPPP +P + +SSPG PV
Sbjct: 835 PPPPPPLAPQKASGGGSSSPGSPV 858
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 11 SPPPPPPSSPSSSDASAASSPGG 33
S PPPP S DA S PGG
Sbjct: 542 SGPPPPAGGAGSRDALFESPPGG 564
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 12 PPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQI 60
PPPPPP SPGG S +P SS D+ EE E+ +
Sbjct: 700 PPPPPPPLAQHPHHRGLLSPGG-TSCCYP-SEDSSEDEDDEEEEQEVDV 746
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 35.4 bits (80), Expect = 0.010
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSL--------GWPVPSRSSG 47
P + PPPPPP P +S A+ AS P P L G P P+ +G
Sbjct: 75 PPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAG 126
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGP 48
P ++ PPPPP P ++AA + G P P ++GP
Sbjct: 73 PPPPPATAAPPPPPPPPPPPASAAAPASGPPAP-----PGLAAGP 112
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 11 SPPPPP--PSSPSSSDASAASSPGGPVSLGWP 40
+PPPPP PSS SSS +S +S GG S G P
Sbjct: 40 APPPPPLAPSSSSSSGSSGSSGGGGSGSAGQP 71
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 34.7 bits (78), Expect = 0.017
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 7 LQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRS-SGPTVDQL-------EEVEL 58
L +S PPP PP P A A SP P P P+ S S P++D L +
Sbjct: 216 LALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRE 275
Query: 59 QIGDAAFSLTKLLEATSAV 77
G L KL EA SA+
Sbjct: 276 LAGTLRQGLAKLSEALSAL 294
>gi|189217895 KH domain-containing, RNA-binding, signal
transduction-associated protein 2 [Homo sapiens]
Length = 349
Score = 34.7 bits (78), Expect = 0.017
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 12 PPPPPPS----SPSSSDASAASSPGGPVSLGWPVPSRSSGPTV 50
PPPPPP +P S + + P PV+ G P P PTV
Sbjct: 211 PPPPPPGRGVLTPRGSTVTRGALPVPPVARGVPTPRARGAPTV 253
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 34.7 bits (78), Expect = 0.017
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVP 42
P++ Q PPPP P P + A AA GP L P P
Sbjct: 69 PQQQQPPPPPPPAPQPPQTRGAPAADDDKGPQQLLLPPP 107
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGG 33
P++L + PPPPPP+ ++ D + A GG
Sbjct: 99 PQQLLLPPPPPPPPA--AALDGAKADGLGG 126
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 33.9 bits (76), Expect = 0.029
Identities = 18/46 (39%), Positives = 20/46 (43%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSS 46
+A P + PPPPPP PS AS P G G P S S
Sbjct: 1266 VATPTSVSQGLPPPPPPPPPSQQVNYIASQPDGKQLQGIPSSSHVS 1311
>gi|116268095 spermatid maturation 1 [Homo sapiens]
Length = 309
Score = 33.9 bits (76), Expect = 0.029
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 11 SPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTV 50
+PPPP P +PS + + P + PVP+ + GP V
Sbjct: 208 NPPPPSPEAPSHKNGGEGAVPEAEAAQYQPVPAPTLGPAV 247
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 12 PPPPPPSSPSSSDASAA------SSPGGP--VSLGWPVPSRSSGPTVDQLEEV 56
PPPPP S+PS AS A S+ GGP V+ + S+GP ++EE+
Sbjct: 9 PPPPPESAPSKPAASIASGGSNSSNKGGPEGVAAQAVASAVSAGPADAEMEEI 61
>gi|215272354 protein phosphatase 3, catalytic subunit, beta
isoform c [Homo sapiens]
Length = 515
Score = 33.5 bits (75), Expect = 0.037
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGP 34
MA PE + + PPPPPP P +D + P P
Sbjct: 1 MAAPEPARAAPPPPPPPPPPPGADRVVKAVPFPP 34
>gi|215272352 protein phosphatase 3, catalytic subunit, beta
isoform a [Homo sapiens]
Length = 525
Score = 33.5 bits (75), Expect = 0.037
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGP 34
MA PE + + PPPPPP P +D + P P
Sbjct: 1 MAAPEPARAAPPPPPPPPPPPGADRVVKAVPFPP 34
>gi|11036640 protein phosphatase 3, catalytic subunit, beta
isoform b [Homo sapiens]
Length = 524
Score = 33.5 bits (75), Expect = 0.037
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 1 MADPEELQVSSPPPPPPSSPSSSDASAASSPGGP 34
MA PE + + PPPPPP P +D + P P
Sbjct: 1 MAAPEPARAAPPPPPPPPPPPGADRVVKAVPFPP 34
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 33.5 bits (75), Expect = 0.037
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPV 41
P++ Q PPPPPPS P + + SSP ++ PV
Sbjct: 770 PQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQVPV 807
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 18/82 (21%)
Query: 3 DPEE--LQVSSPPPPPPSS----PSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEV 56
+PEE + VSSP PPP+ PSSSD+S+ SS S S T D EE
Sbjct: 460 EPEEPVVAVSSPAVPPPTKVVAPPSSSDSSSDSS------------SDSDSSTDDSEEER 507
Query: 57 ELQIGDAAFSLTKLLEATSAVS 78
++ + L + E +A+S
Sbjct: 508 AQRLAELQEQLKAVHEQLAALS 529
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVP 42
P Q PPPPPP A+ A P + VP
Sbjct: 768 PPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQVP 806
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 5 EELQVSSPPPPPPSSPSSSDASAASSPGGPVSL 37
++LQ PPPPPP P P PV L
Sbjct: 968 QQLQ-QQPPPPPPPQPQPPPQQQHQPPPRPVHL 999
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGP 34
P Q PPPPP PS +A + P
Sbjct: 767 PPPPQQQQQPPPPPPPPSMPQQAAPAMKSSP 797
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 2 ADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQ 52
ADP+ + PPPPPP P +A A+S P P P+P S+GP Q
Sbjct: 587 ADPKASR-ELPPPPPPPPPPLPEA-ASSPPPAP-----PLPLESAGPGCGQ 630
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 11 SPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGP 48
+PPPPPPS P P P G+P P GP
Sbjct: 429 TPPPPPPSFPPPPPPPGTQLP--PPPPGYPAPKPPVGP 464
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 33.5 bits (75), Expect = 0.037
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 10 SSPPPPPPSSPSSSDASAASSPGGPVSLGWP 40
+SPPPPPP PS D A +P P +LG P
Sbjct: 131 ASPPPPPPPRPSPPDVFAGFAP-HPAALGPP 160
>gi|239735596 transmembrane protein 171 isoform 1 [Homo sapiens]
Length = 324
Score = 33.1 bits (74), Expect = 0.049
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 12 PPPPPPSSPSSSDASAASSPG 32
PPPPPP P SS ++ A SPG
Sbjct: 221 PPPPPPYFPESSASAVAESPG 241
>gi|239735594 transmembrane protein 171 isoform 2 [Homo sapiens]
Length = 323
Score = 33.1 bits (74), Expect = 0.049
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 12 PPPPPPSSPSSSDASAASSPG 32
PPPPPP P SS ++ A SPG
Sbjct: 221 PPPPPPYFPESSASAVAESPG 241
>gi|224591414 low density lipoprotein receptor class A domain
containing 2 [Homo sapiens]
Length = 272
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 4 PEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLG-------WPVPSRSSGP 48
P L SSP P P +P S PG P LG PVP SSGP
Sbjct: 93 PPALNTSSPAPADPCAPGSYLQFYEGPPGAPRPLGSPLCGLNIPVPVASSGP 144
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 2 ADPEELQVSSPPPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTV 50
+DPE PP PPS P D + +S +SLGW P++ G +
Sbjct: 15693 SDPEVAGDPIFPPGPPSCPEVKDKTKSS-----ISLGWKPPAKDGGSPI 15736
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 13 PPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSG-PTVDQLEEVELQIGD--------- 62
PP PPS+P +D S +S VSL W P G P + EV+ D
Sbjct: 25002 PPGPPSNPKVTDTSRSS-----VSLAWSKPIYDGGAPVKGYVVEVKEAAADEWTTCTPPT 25056
Query: 63 ----AAFSLTKLLEAT 74
F++TKL E T
Sbjct: 25057 GLQGKQFTVTKLKENT 25072
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 13 PPPPPSSPSSSDASAASSPGGPVSLGWPVPSRSSGPTVDQLEEVELQIGDAAF 65
PP PPS+P +D + S+ SL W P G + ++GD A+
Sbjct: 20672 PPGPPSNPHVTDTTKKSA-----SLAWGKPHYDGGLEITGYVVEHQKVGDEAW 20719
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.125 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,098,595
Number of Sequences: 37866
Number of extensions: 354556
Number of successful extensions: 8952
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 403
Number of HSP's that attempted gapping in prelim test: 4993
Number of HSP's gapped (non-prelim): 3403
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.