Guide to the Human Genome
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Name: C4orf46 Sequence: fasta or formatted (113aa) NCBI GI: 56606125
Description:

hypothetical protein LOC201725

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         11           2
 C cysteine            0.9          1           1
 D aspartate           7.1          8           2
 E glutamate           8.8         10           2
 F phenylalanine       2.7          3           1
 G glycine             5.3          6           2
 H histidine           0.0          0           0
 I isoleucine          0.9          1           1
 K lysine              4.4          5           1
 L leucine            10.6         12           2
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline            12.4         14           6
 Q glutamine           3.5          4           1
 R arginine            2.7          3           1
 S serine             15.9         18           3
 T threonine           4.4          5           1
 V valine              6.2          7           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC201725 
LOC100129478          0.887   PREDICTED: hypothetical protein 
LOC100129478          0.887   PREDICTED: hypothetical protein 
LOC100129478          0.872   PREDICTED: hypothetical protein 
SYN2                  0.064   synapsin II isoform IIa 
SYN2                  0.064   synapsin II isoform IIb 
SMAD5                 0.054   SMAD, mothers against DPP homolog 5 
SMAD5                 0.054   SMAD, mothers against DPP homolog 5 
SMAD5                 0.054   SMAD, mothers against DPP homolog 5 
FUSSEL18              0.054   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.054   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.054   PREDICTED: functional smad suppressing element 18 [...
RANBP9                0.049   RAN binding protein 9 
LOC100293268          0.049   PREDICTED: hypothetical protein 
MYPOP                 0.049   Myb protein P42POP 
KHDRBS2               0.049   KH domain-containing, RNA-binding, signal transduct...
FOXG1                 0.049   forkhead box G1 
SFRS2IP               0.044   splicing factor, arginine/serine-rich 2, interactin...
SPEM1                 0.044   spermatid maturation 1 
SMARCA5               0.039   SWI/SNF-related matrix-associated actin-dependent re...
PPP3CB                0.039   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.039   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.039   protein phosphatase 3, catalytic subunit, beta isofo...
BRD4                  0.039   bromodomain-containing protein 4 isoform long 
ESPN                  0.039   espin 
MEX3D                 0.039   ring finger and KH domain containing 1 
TMEM171               0.039   transmembrane protein 171 isoform 1 
TMEM171               0.039   transmembrane protein 171 isoform 2 
LDLRAD2               0.039   low density lipoprotein receptor class A domain con...
TTN                   0.039   titin isoform N2-A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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