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Search of human proteins with 55770878
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
(432 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55770878 neuronal pentraxin I precursor [Homo sapiens] 873 0.0
gi|28195384 neuronal pentraxin II [Homo sapiens] 469 e-132
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 370 e-102
gi|148886654 polydom [Homo sapiens] 147 2e-35
gi|240120161 G protein-coupled receptor 144 [Homo sapiens] 114 2e-25
gi|61966763 hypothetical protein LOC390667 [Homo sapiens] 109 4e-24
gi|167900484 pentraxin 3 [Homo sapiens] 101 2e-21
gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens] 83 6e-16
gi|4502133 serum amyloid P component precursor [Homo sapiens] 73 4e-13
gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens] 51 2e-06
gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens] 51 2e-06
gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo sap... 51 2e-06
gi|59710093 G-protein coupled receptor 112 [Homo sapiens] 40 0.004
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 39 0.007
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 39 0.007
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 39 0.007
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
gi|110815815 centlein isoform 1 [Homo sapiens] 39 0.007
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 39 0.009
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 39 0.009
gi|45433552 G protein-coupled receptor 133 [Homo sapiens] 38 0.016
gi|126723390 ankyrin repeat domain 24 [Homo sapiens] 38 0.016
gi|154354987 hook homolog 2 isoform 2 [Homo sapiens] 38 0.020
gi|32698688 citron [Homo sapiens] 37 0.027
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 37 0.035
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 37 0.035
gi|157042792 coiled-coil domain containing 64B [Homo sapiens] 37 0.035
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 37 0.035
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 37 0.045
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 37 0.045
>gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
Length = 432
Score = 873 bits (2255), Expect = 0.0
Identities = 432/432 (100%), Positives = 432/432 (100%)
Query: 1 MPAGRAARTCALLALCLLGAGAQDFGPTRFICTSVPVDADMCAASVAAGGAEELRSSVLQ 60
MPAGRAARTCALLALCLLGAGAQDFGPTRFICTSVPVDADMCAASVAAGGAEELRSSVLQ
Sbjct: 1 MPAGRAARTCALLALCLLGAGAQDFGPTRFICTSVPVDADMCAASVAAGGAEELRSSVLQ 60
Query: 61 LRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGRKQPGSGKNTMGD 120
LRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGRKQPGSGKNTMGD
Sbjct: 61 LRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGRKQPGSGKNTMGD 120
Query: 121 LSRTPAAETLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLKDLLQSKIDELERQVLSR 180
LSRTPAAETLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLKDLLQSKIDELERQVLSR
Sbjct: 121 LSRTPAAETLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLKDLLQSKIDELERQVLSR 180
Query: 181 VNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPLRTNYMY 240
VNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPLRTNYMY
Sbjct: 181 VNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPLRTNYMY 240
Query: 241 AKVKKSLPEMYAFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGNNPMEILINDKV 300
AKVKKSLPEMYAFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGNNPMEILINDKV
Sbjct: 241 AKVKKSLPEMYAFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGNNPMEILINDKV 300
Query: 301 AKLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQD 360
AKLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQD
Sbjct: 301 AKLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQD 360
Query: 361 TLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYGGA 420
TLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYGGA
Sbjct: 361 TLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYGGA 420
Query: 421 TKWTFEACRQIN 432
TKWTFEACRQIN
Sbjct: 421 TKWTFEACRQIN 432
>gi|28195384 neuronal pentraxin II [Homo sapiens]
Length = 431
Score = 469 bits (1207), Expect = e-132
Identities = 241/436 (55%), Positives = 319/436 (73%), Gaps = 28/436 (6%)
Query: 11 ALLALCL---LGAGAQDFGP--TRFICTSVPVDADMCAASVAA----GGA----EELRSS 57
ALLA + + AGAQD +RF+CT++P +A + A GGA EELR++
Sbjct: 3 ALLAASVALAVAAGAQDSPAPGSRFVCTALPPEAVHAGCPLPAMPMQGGAQSPEEELRAA 62
Query: 58 VLQLRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGRKQPGSGKNT 117
VLQLRETV+QQKET+ +Q+E IRELT KL RCE + G+AR G +GK+T
Sbjct: 63 VLQLRETVVQQKETLGAQREAIRELTGKLARCEGLA-----GGKARGAGA-----TGKDT 112
Query: 118 MGDLSRTPAAETLSQLGQTLQSLKTRLENLEQYSRLNSSSQ--TNSLKDLLQSKIDELER 175
MGDL R P + QL ++LQ+LK RLE+LE R N S+ +++LQ ++ ELER
Sbjct: 113 MGDLPRDPG-HVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFREVLQQRLGELER 171
Query: 176 QVLSRVNTLEEGKGGPRNDTE-ERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPL 234
Q+L +V LE+ K N+T R K E+ L +L QR++ELE+G + D F+++ PL
Sbjct: 172 QLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSAFKSPDAFKVSLPL 231
Query: 235 RTNYMYAKVKKSLPEMYAFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGNNPMEI 294
RTNY+Y K+KK+LPE+YAFT+C+WL+SSA+PG+GTPFSYAVPGQANE+VLIEWGNNP+E+
Sbjct: 232 RTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPIEL 291
Query: 295 LINDKVAKLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLV 354
LINDKVA+LP ++DGKWHHICVTWTTRDG+WEA+QDG + G+GENLAP+HPIKP GVL+
Sbjct: 292 LINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGTGENLAPWHPIKPGGVLI 351
Query: 355 LGQEQDTLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHI 414
LGQEQDT+GG FDATQAFVGEL+ FNIWDR L E+ N+A CST + GN+I W ++++
Sbjct: 352 LGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIANCSTN-MPGNIIPWVDNNV 410
Query: 415 EIYGGATKWTFEACRQ 430
+++GGA+KW E C +
Sbjct: 411 DVFGGASKWPVETCEE 426
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 370 bits (951), Expect = e-102
Identities = 203/417 (48%), Positives = 276/417 (66%), Gaps = 28/417 (6%)
Query: 28 TRFICTSV----PVDADMCAASVAAGGAEE----LRSSVLQLRETVLQQKETILSQKETI 79
+RF+CT + P A A+ AA G E L+S+ QLR+T LQQ+ I + ++TI
Sbjct: 92 SRFLCTPLAAACPSGAQQGDAAGAAPGEREELLLLQSTAEQLRQTALQQEARIRADQDTI 151
Query: 80 RELTAKLGRCESQSTLDPGAGEARAGGGRKQPGSGKNTMGDLSRTPAAETLSQLGQTLQS 139
RELT KLGRCES G R G + G ++TM D A L +L +++
Sbjct: 152 RELTGKLGRCES--------GLPR---GLQGAGPRRDTMADGPWDSPALIL-ELEDAVRA 199
Query: 140 LKTRLENLEQY--SRLNSSSQ---TNSLKDLLQSKIDELERQVLSRVNTLEEGKGG-PRN 193
L+ R++ LEQ +R+N S+ +++ L SK+D+LE Q+L++V LE+ + +
Sbjct: 200 LRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEGQLLAQVLALEKERVALSHS 259
Query: 194 DTEERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPLRTNYMYAKVKKSLPEMYAF 253
+R ++E L L R++ELE G P D F+++ P+R NYMYA+V+K+LPE+YAF
Sbjct: 260 SRRQRQEVEKELDVLQGRVAELEHGSSAYSPPDAFKISIPIRNNYMYARVRKALPELYAF 319
Query: 254 TVCMWLKS-SATPGVGTPFSYAVPGQANELVLIEWGNNPMEILINDKVAKLPFVINDGKW 312
T CMWL+S S+ G GTPFSY+VPGQANE+VL+E G+ PME+LINDKVA+LP + D W
Sbjct: 320 TACMWLRSRSSGTGQGTPFSYSVPGQANEIVLLEAGHEPMELLINDKVAQLPLSLKDNGW 379
Query: 313 HHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGFDATQAF 372
HHIC+ WTTRDG+W AYQDG GSGENLA +HPIKP G+L+LGQEQDTLGG FDATQAF
Sbjct: 380 HHICIAWTTRDGLWSAYQDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAF 439
Query: 373 VGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYGGATKWTFEACR 429
VG++A FN+WD LTP +V +A C T L GNV+ W + +E +GGATK F+ C+
Sbjct: 440 VGDIAQFNLWDHALTPAQVLGIANC-TAPLLGNVLPWEDKLVEAFGGATKAAFDVCK 495
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 147 bits (371), Expect = 2e-35
Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 3/186 (1%)
Query: 228 FQLTFPLRTNYMYAKVKKSLPEMYAFTVCMWLKSSATPGVGTPFSYAVP-GQANELVLIE 286
F L F + Y Y + LP ++A T W+KSS GTP SYAV G N L+L +
Sbjct: 1426 FNLDFEVSGIYGYVMLDGMLPSLHALTCTFWMKSSDDMNYGTPISYAVDNGSDNTLLLTD 1485
Query: 287 WGNNPMEILINDKVAKLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHP 346
+ + + +K+ P V NDG+WHHI +TWT+ +G+W+ Y DG G L+ P
Sbjct: 1486 YNGWVLYVNGREKITNCPSV-NDGRWHHIAITWTSANGIWKVYIDGKLSDGGAGLSVGLP 1544
Query: 347 IKPQGVLVLGQEQDTLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLAT-CSTKALSGN 405
I G LVLGQEQD G GF ++FVG ++ N+WD L+P +V +LAT C + GN
Sbjct: 1545 IPGGGALVLGQEQDKKGEGFSPAESFVGSISQLNLWDYVLSPQQVKSLATSCPEELSKGN 1604
Query: 406 VIAWAE 411
V+AW +
Sbjct: 1605 VLAWPD 1610
>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
Length = 963
Score = 114 bits (284), Expect = 2e-25
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 9/194 (4%)
Query: 230 LTFPLRTNYMYAKVKKSLPEMYAFTVCMWLK-SSATPGVGTPFSYAVPGQANELVLIEWG 288
L F RT A+++ LPE+ A T C ++ A+P FS A P N L L +
Sbjct: 120 LVFDERTADRAARLRSPLPELAALTACTHVQWDCASPDPAALFSVAAPALPNALQLRAFA 179
Query: 289 NNPMEILINDKVAK---LPFVIN---DGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLA 342
P ++ V + PF+ DG+WHH+C TW R G W + DG + L
Sbjct: 180 E-PGGVVRAALVVRGQHAPFLAAFRADGRWHHVCATWEQRGGRWALFSDGRRRAGARGLG 238
Query: 343 PYHPIKPQGVLVLGQEQDTLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKAL 402
HP+ G+LVLGQ+QD+LGGGF A G L F++W R L+P +++ C+ +
Sbjct: 239 AGHPVPSGGILVLGQDQDSLGGGFSVRHALSGNLTDFHLWARALSPAQLHRARACAPPS- 297
Query: 403 SGNVIAWAESHIEI 416
G + W +++
Sbjct: 298 EGLLFRWDPGALDV 311
>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
Length = 473
Score = 109 bits (273), Expect = 4e-24
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 252 AFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGN---NPMEILINDKVAK-LPF-V 306
A + C W+++ A+ +GT SYA N+LVL + + +I D + LP +
Sbjct: 291 ALSFCSWVRT-ASGRLGTLLSYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPLQL 349
Query: 307 INDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGF 366
+ DG+WHHICV WT+ G + + D +G + I P G LVLGQEQD++GGGF
Sbjct: 350 LLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGF 409
Query: 367 DATQAFVGELAHFNIWDRKLTPGEVYNLA 395
D+++AFVG ++ IWDR L PGEV NLA
Sbjct: 410 DSSEAFVGSMSGLAIWDRALVPGEVANLA 438
>gi|167900484 pentraxin 3 [Homo sapiens]
Length = 381
Score = 101 bits (251), Expect = 2e-21
Identities = 75/272 (27%), Positives = 131/272 (48%), Gaps = 18/272 (6%)
Query: 159 TNSLKDLLQSKIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKG 218
T++L +LLQ+ D R L+R+ EG R + R + L L Q ++L
Sbjct: 114 TSALDELLQATRDAGRR--LARM----EGAEAQRPEEAGRA-LAAVLEELRQTRADLHAV 166
Query: 219 Q----KDNRP-GDKFQLTFPLRTNYMYAKVKKSLP-EMYAFTVCMWLKSSATPGVGTPFS 272
Q + P G + + FP+R+ ++ V P + +F+ C+W+K++ FS
Sbjct: 167 QGWAARSWLPAGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFS 226
Query: 273 YAVPGQANELVLIEWGNNPMEILINDKVAKL--PFVINDGKWHHICVTWTTRDGVWEAYQ 330
Y E+ L + ++ + KL +++ G+W H+C TW + +G+ +
Sbjct: 227 YGTKRNPYEIQLY-LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWV 285
Query: 331 DGTQGGSGENLAPYHPIKPQGVLVLGQEQD--TLGGGFDATQAFVGELAHFNIWDRKLTP 388
+G + +A H + G+L +GQE++ +GGGFD T AF G L FNIWD L+
Sbjct: 286 NGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSN 345
Query: 389 GEVYNLATCSTKALSGNVIAWAESHIEIYGGA 420
E+ + + GN++ W + I+ +GGA
Sbjct: 346 EEIRETGGAESCHIRGNIVGWGVTEIQPHGGA 377
>gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens]
Length = 224
Score = 82.8 bits (203), Expect = 6e-16
Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 33/234 (14%)
Query: 197 ERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPLRTNYMYAKVKKSLPE-MYAFTV 255
E++ LTSL + + +K FP ++ Y +K L + + AFTV
Sbjct: 2 EKLLCFLVLTSLSHAFGQTDMSRK--------AFVFPKESDTSYVSLKAPLTKPLKAFTV 53
Query: 256 CM--WLKSSATPGVGTPFSYAVPGQANELVLIEWGNN--------PMEILIN-DKVAKLP 304
C+ + + S+T G FSYA Q NE +LI W + EIL +V P
Sbjct: 54 CLHFYTELSSTRGYSI-FSYATKRQDNE-ILIFWSKDIGYSFTVGGSEILFEVPEVTVAP 111
Query: 305 FVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGG 364
HIC +W + G+ E + DG + ++L + + + ++LGQEQD+ GG
Sbjct: 112 V--------HICTSWESASGIVEFWVDG-KPRVRKSLKKGYTVGAEASIILGQEQDSFGG 162
Query: 365 GFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYG 418
F+ +Q+ VG++ + N+WD L+P E+ + S NV+ W E+ G
Sbjct: 163 NFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGG--PFSPNVLNWRALKYEVQG 214
>gi|4502133 serum amyloid P component precursor [Homo sapiens]
Length = 223
Score = 73.2 bits (178), Expect = 4e-13
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 4/166 (2%)
Query: 253 FTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGNNPMEILINDKVAKLPFVINDGKW 312
FT+C S + FSY G+ NEL++ + + I +
Sbjct: 52 FTLCFRAYSDLSRAYSL-FSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAP 110
Query: 313 HHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGFDATQAF 372
HICV+W + G+ E + +GT + L + ++ Q +VLGQEQD+ GG FD +Q+F
Sbjct: 111 VHICVSWESSSGIAEFWINGTPLVK-KGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSF 169
Query: 373 VGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIEIYG 418
VGE+ +WD L P + L+ L N++ W + EI G
Sbjct: 170 VGEIGDLYMWDSVLPPENI--LSAYQGTPLPANILDWQALNYEIRG 213
>gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 314 HICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGFDATQAFV 373
H+ V+W + G+ + +G G + + + + + ++LGQEQD+ GG FD Q+FV
Sbjct: 122 HVNVSWESASGIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 374 GELAHFNIWDRKLTPGEV 391
G + +WD L P E+
Sbjct: 181 GVIWDVFLWDHVLPPKEM 198
>gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 314 HICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGFDATQAFV 373
H+ V+W + G+ + +G G + + + + + ++LGQEQD+ GG FD Q+FV
Sbjct: 122 HVNVSWESASGIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 374 GELAHFNIWDRKLTPGEV 391
G + +WD L P E+
Sbjct: 181 GVIWDVFLWDHVLPPKEM 198
>gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo
sapiens]
Length = 229
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 314 HICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGFDATQAFV 373
H+ V+W + G+ + +G G + + + + + ++LGQEQD+ GG FD Q+FV
Sbjct: 122 HVNVSWESASGIATLWANGKLVGR-KGVWKGYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 374 GELAHFNIWDRKLTPGEV 391
G + +WD L P E+
Sbjct: 181 GVIWDVFLWDHVLPPKEM 198
>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
Length = 3080
Score = 40.0 bits (92), Expect = 0.004
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 15/178 (8%)
Query: 240 YAKVKKSLPEMYAFTVCMWLK-SSATPGVGTPFSY----AVPGQANELVLIEWGNNPMEI 294
Y + ++PE+ FT C+ L FSY A+ G+ + + + + + +
Sbjct: 42 YVSLIDTIPELSRFTACIDLVFMDDNSRYWMAFSYITNNALLGREDIDLGLAGDHQQLIL 101
Query: 295 LINDKVAKLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLV 354
K + + +WH IC+ W G E + + + E H + P G L
Sbjct: 102 YRLGKTFSIRHHLASFQWHTICLIWDGVKGKLELFLNKER--ILEVTDQPHNLTPHGTLF 159
Query: 355 LGQEQDTLGGGFDA-TQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAE 411
LG + ++F G L +F +WD L E K L GN+++W E
Sbjct: 160 LGHFLKNESSEVKSMMRSFPGSLYYFQLWDHILENEEF-------MKCLDGNIVSWEE 210
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 39.3 bits (90), Expect = 0.007
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 33/203 (16%)
Query: 50 GAEELRSSVLQLRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGG-- 107
G +EL +L + +E ++ Q++ EL A+LGR E + L A GG
Sbjct: 1074 GRQELEKLKRRLDGESSELQEQMVEQQQRAEELRAQLGRKEEE--LQAALARAEDEGGAR 1131
Query: 108 -------RKQPGSGKNTMGDL-----SRTPAAETLSQLGQTLQSLKTRLE------NLEQ 149
R+ + DL +RT A + LG+ L++L+ LE N +Q
Sbjct: 1132 AQLLKSLREAQAALAEAQEDLESERVARTKAEKQRRDLGEELEALRGELEDTLDSTNAQQ 1191
Query: 150 YSRLNSSSQTNSLKDLL--QSKIDELERQVLSR---------VNTLEEGKGGPRNDTEER 198
R + LK L +++I E Q L + LE+ + G + R
Sbjct: 1192 ELRSKREQEVTELKKTLEEETRIHEAAVQELRQRHGQALGELAEQLEQARRGKGAWEKTR 1251
Query: 199 VKIETALTSLHQRISELEKGQKD 221
+ +E ++ L +S L+ +++
Sbjct: 1252 LALEAEVSELRAELSSLQTARQE 1274
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 39.3 bits (90), Expect = 0.007
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 33/203 (16%)
Query: 50 GAEELRSSVLQLRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGG-- 107
G +EL +L + +E ++ Q++ EL A+LGR E + L A GG
Sbjct: 1066 GRQELEKLKRRLDGESSELQEQMVEQQQRAEELRAQLGRKEEE--LQAALARAEDEGGAR 1123
Query: 108 -------RKQPGSGKNTMGDL-----SRTPAAETLSQLGQTLQSLKTRLE------NLEQ 149
R+ + DL +RT A + LG+ L++L+ LE N +Q
Sbjct: 1124 AQLLKSLREAQAALAEAQEDLESERVARTKAEKQRRDLGEELEALRGELEDTLDSTNAQQ 1183
Query: 150 YSRLNSSSQTNSLKDLL--QSKIDELERQVLSR---------VNTLEEGKGGPRNDTEER 198
R + LK L +++I E Q L + LE+ + G + R
Sbjct: 1184 ELRSKREQEVTELKKTLEEETRIHEAAVQELRQRHGQALGELAEQLEQARRGKGAWEKTR 1243
Query: 199 VKIETALTSLHQRISELEKGQKD 221
+ +E ++ L +S L+ +++
Sbjct: 1244 LALEAEVSELRAELSSLQTARQE 1266
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 39.3 bits (90), Expect = 0.007
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 33/203 (16%)
Query: 50 GAEELRSSVLQLRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGG-- 107
G +EL +L + +E ++ Q++ EL A+LGR E + L A GG
Sbjct: 1107 GRQELEKLKRRLDGESSELQEQMVEQQQRAEELRAQLGRKEEE--LQAALARAEDEGGAR 1164
Query: 108 -------RKQPGSGKNTMGDL-----SRTPAAETLSQLGQTLQSLKTRLE------NLEQ 149
R+ + DL +RT A + LG+ L++L+ LE N +Q
Sbjct: 1165 AQLLKSLREAQAALAEAQEDLESERVARTKAEKQRRDLGEELEALRGELEDTLDSTNAQQ 1224
Query: 150 YSRLNSSSQTNSLKDLL--QSKIDELERQVLSR---------VNTLEEGKGGPRNDTEER 198
R + LK L +++I E Q L + LE+ + G + R
Sbjct: 1225 ELRSKREQEVTELKKTLEEETRIHEAAVQELRQRHGQALGELAEQLEQARRGKGAWEKTR 1284
Query: 199 VKIETALTSLHQRISELEKGQKD 221
+ +E ++ L +S L+ +++
Sbjct: 1285 LALEAEVSELRAELSSLQTARQE 1307
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 39.3 bits (90), Expect = 0.007
Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 10/177 (5%)
Query: 53 ELRSSVLQLRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGRKQPG 112
E + + E + +Q+E + Q+E +RE +L CE + L E R K PG
Sbjct: 280 EQEERLCEQEERLREQEERLCEQEERLREQEERL--CEQEERLREQ--EERLCEQEKLPG 335
Query: 113 SGKNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLEQY---SRLNSSSQTNSLKDLLQS- 168
+ + ++ + E + + L + LE +E+ RL + ++ LQ
Sbjct: 336 Q-ERLLEEVEKLLEQERRQEEQERLLERERLLEEVEELLEQERLRQQDERLWQQETLQEL 394
Query: 169 -KIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKGQKDNRP 224
++ ELER + L E + PR+ EE + L Q++ EL+K P
Sbjct: 395 ERLRELERMLELGWEALYEQRAEPRSGFEELNNENKSTLQLEQQVKELKKSGGAEEP 451
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 39.3 bits (90), Expect = 0.007
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 124 TPAAETLSQLGQTLQS---LKTRLENLEQYSRLNSSSQTNSLK--DLLQSKIDELERQVL 178
TP L QTLQ L+ RL++ E+ SR +K D L+S + + +
Sbjct: 678 TPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTE 737
Query: 179 SRVNTLEE----GKGGPRNDTEERVKI---ETALTSLHQRISELEKGQKDNRPGDKFQLT 231
+R LE+ K + +TE +VKI ET +TSL ++++E + +N +L
Sbjct: 738 TREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENE-----ELI 792
Query: 232 FPLRTNYMYAKVKKS 246
P+ ++ A KS
Sbjct: 793 NPMEKSHQSADRAKS 807
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 38.9 bits (89), Expect = 0.009
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 29 RFICTSVPVDADMCAASVAAGGAE-ELRSSVLQLRETVLQQKETILSQKETIRELTAKLG 87
R + T+VPV + +V A+ +L+SS LQ +T L Q K I L ++L
Sbjct: 156 RRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQI------KSNIDALLSRLE 209
Query: 88 RCESQSTLDP---------GAGEARAGGGRKQPGSGKNTMGDLSRTPAAE--TLSQLGQT 136
+ ++ +P GAG GGG GSG G SR PA + T S+ G
Sbjct: 210 QIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLP 269
Query: 137 LQSLKTRLENLEQYSRLNSSSQTNSLKD 164
+TR + E+ +S + +D
Sbjct: 270 QGEARTRDDGDEEGLLTHSEEELEHSQD 297
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 38.9 bits (89), Expect = 0.009
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 29 RFICTSVPVDADMCAASVAAGGAE-ELRSSVLQLRETVLQQKETILSQKETIRELTAKLG 87
R + T+VPV + +V A+ +L+SS LQ +T L Q K I L ++L
Sbjct: 140 RRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQI------KSNIDALLSRLE 193
Query: 88 RCESQSTLDP---------GAGEARAGGGRKQPGSGKNTMGDLSRTPAAE--TLSQLGQT 136
+ ++ +P GAG GGG GSG G SR PA + T S+ G
Sbjct: 194 QIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLP 253
Query: 137 LQSLKTRLENLEQYSRLNSSSQTNSLKD 164
+TR + E+ +S + +D
Sbjct: 254 QGEARTRDDGDEEGLLTHSEEELEHSQD 281
>gi|45433552 G protein-coupled receptor 133 [Homo sapiens]
Length = 874
Score = 38.1 bits (87), Expect = 0.016
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 312 WHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGV-LVLGQEQDTL----GGGF 366
W H+ TW +++G+ + Y +GT S + V LV+G EQD G F
Sbjct: 167 WTHVLFTWKSKEGL-KVYVNGTLSTSDPSGKVSRDYGESNVNLVIGSEQDQAKCYENGAF 225
Query: 367 DATQAFVGELAHFNIWDRKLTPGEV 391
D F IW+R LTP E+
Sbjct: 226 D----------EFIIWERALTPDEI 240
>gi|126723390 ankyrin repeat domain 24 [Homo sapiens]
Length = 1146
Score = 38.1 bits (87), Expect = 0.016
Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 28/202 (13%)
Query: 43 AASVAAGGAEELRSSVLQLRETVLQQKETILSQKE--TIRELTAKLGRCESQSTLDPGAG 100
A + GA E + ET ++ E L Q+E EL A LG+CE A
Sbjct: 706 AGPILHPGAAEASEKLQVELETRIRGLEEALRQREREAAAELEAALGKCE--------AA 757
Query: 101 EARAGGGRKQ----PGSGKNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLE-------- 148
EA AG R++ GSG + G T L Q + L+ +RL LE
Sbjct: 758 EAEAGRLRERVREAEGSGASGGGGGDTTQLRAALEQAREDLRDRDSRLRELEAASACLDE 817
Query: 149 -QYSRLNSSSQTNSLKDLLQSKIDELERQVLSRVNTLEEGKGGPRNDTEER----VKIET 203
+ SRL + + L+ L + +E + + L E R E++ ++
Sbjct: 818 ARASRLLAEEEARGLRAELAQR-EEARLEQSRELEVLREQLATARATGEQQRTAAAELGR 876
Query: 204 ALTSLHQRISELEKGQKDNRPG 225
A + R++EL ++ R G
Sbjct: 877 ARDAAEARVAELPAACEEARQG 898
>gi|154354987 hook homolog 2 isoform 2 [Homo sapiens]
Length = 717
Score = 37.7 bits (86), Expect = 0.020
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 63 ETVLQQKETILSQKETIRELTAKL--------GRCESQSTLDPGAGEARAGGGRKQPGSG 114
E+V ++KE +L++++++RE +L G ++ +LDP + P
Sbjct: 398 ESVTKEKERLLAERDSLREANEELRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAEL 457
Query: 115 KNTM-------GDLSRTPAA--ETLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLKDL 165
+ T+ L R AA E +L + L+ LE RLN
Sbjct: 458 RETLLRLQLENKRLCRQEAADRERQEELQRHLEDANRARHGLETQHRLN----------- 506
Query: 166 LQSKIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEK 217
Q ++ EL QV L+E G + + K+E L LH+ EL++
Sbjct: 507 -QQQLSELRAQVEDLQKALQEQGGKTEDSILLKRKLEEHLQKLHEADLELQR 557
>gi|32698688 citron [Homo sapiens]
Length = 2027
Score = 37.4 bits (85), Expect = 0.027
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 18/205 (8%)
Query: 44 ASVAAGGAEELRSSVLQLRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEAR 103
AS A +LRS V LR + +++ + SQK+T+ L E Q +D A
Sbjct: 977 ASGANDEIVQLRSEVDHLRREITEREMQLTSQKQTMEALKTTCTMLEEQ-VMDLEALNDE 1035
Query: 104 AGGGRKQPGSGKNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLK 163
+Q + ++ +GD SQ ++ L+ R+ + E+ SR + + +
Sbjct: 1036 LLEKERQWEAWRSVLGD--------EKSQFECRVRELQ-RMLDTEKQSRARADQRITESR 1086
Query: 164 DLLQSKIDELERQVLSRVNTLEEGK------GGPRNDTEER-VKIETALTSLHQRI-SEL 215
+++ + E + ++L+ L+E K ND E++ +E SL Q++ +E
Sbjct: 1087 QVVELAVKEHKAEILALQQALKEQKLKAESLSDKLNDLEKKHAMLEMNARSLQQKLETER 1146
Query: 216 EKGQKDNRPGDKFQLTFPLRTNYMY 240
E Q+ K Q L+ N+++
Sbjct: 1147 ELKQRLLEEQAKLQQQMDLQKNHIF 1171
Score = 32.3 bits (72), Expect = 0.86
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 21/162 (12%)
Query: 60 QLRETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGRKQPGSGKNTMG 119
+LRE L+ +E L K + EL L ESQ T A A R+
Sbjct: 857 RLREVSLEHEEQKLELKRQLTELQLSLQERESQLTALQAARAALESQLRQ---------- 906
Query: 120 DLSRTPAAETLSQLGQTLQSLKTRLENLEQY--SRLNSSSQTNSLKDLLQSKID---ELE 174
++T ET ++ + +Q+L + +++ + NS + L++ L + EL
Sbjct: 907 --AKTELEETTAEAEEEIQALTAHRDEIQRKFDALRNSCTVITDLEEQLNQLTEDNAELN 964
Query: 175 RQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELE 216
Q L+E G +E V++ + + L + I+E E
Sbjct: 965 NQNFYLSKQLDEASGA----NDEIVQLRSEVDHLRREITERE 1002
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 37.0 bits (84), Expect = 0.035
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 52 EELRSSVLQLRET---VLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGR 108
E LR +LRE + +Q+E + Q+E +RE +L CE + + G
Sbjct: 199 ERLREQEERLREQEERLCEQEERLCEQEERLREQEERL--CEQE----------KLPGQE 246
Query: 109 KQPGSGKNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLKDLLQS 168
+ + + R E L + + L ++ LE + Q +L++L
Sbjct: 247 RLLEEVEKLLKQERRQEEQERLLERERLLDEVEELLEQERLRQQDERLWQQETLREL--E 304
Query: 169 KIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKGQKDNRP 224
++ ELER + L E + PR+ EE + L Q++ ELEK P
Sbjct: 305 RLRELERMLELGWEALYEQRAEPRSGFEELNNENKSTLQLEQQVKELEKSGGAEEP 360
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 37.0 bits (84), Expect = 0.035
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 101 EARAGGGRKQPGSGKNTMGDLSRTPAAETLSQLGQTLQSLKTRLE----NLEQYSRLNSS 156
E GG PG + ++ ++ T+SQL + ++SLK + + LE+ + N+
Sbjct: 56 ETTTSGGGHSPGDSQYQELAVALESSSVTISQLNENIESLKQQKKQVEHQLEEAKKTNNE 115
Query: 157 SQTNSLKDLLQSKIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELE 216
++ L I LE+ L TL K R+ EE + L QRI ELE
Sbjct: 116 IHKAQMERLETINILTLEKADLK--TTLYHTKRAARHFEEESKDLAGRLQYSLQRIQELE 173
Query: 217 K 217
+
Sbjct: 174 R 174
>gi|157042792 coiled-coil domain containing 64B [Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.035
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 46/209 (22%)
Query: 52 EELRSSVLQLRETVLQQKETILSQKETIRE-LTAKLGRCESQSTLDPGAGEA-RAGGGRK 109
EELR + L L+++E + + +R L A+ E+++ G EA RA G +
Sbjct: 76 EELRRQLETLSAQHLEREERLQQENHELRRGLAARGAEWEARAVELEGDVEALRAQLGEQ 135
Query: 110 ---QPGSGKNTMGDLSRTPA-----AETLSQLGQTLQSLKTRLENL------------EQ 149
Q SG+ LS ++ L+Q QT Q L+ L+ L E
Sbjct: 136 RSEQQDSGRERARALSELSEQNLRLSQQLAQASQTEQELQRELDALRGQCQAQALAGAEL 195
Query: 150 YSRLNSSSQTNSLKDLLQSKIDELERQVLSRVNTLEEGKGGPRNDTEERVKIE------- 202
+RL S N + LQS+ +LE Q+ +E+G+G + EE + +
Sbjct: 196 RTRLESLQGENQM---LQSRRQDLEAQIRGLREEVEKGEGRLQTTHEELLLLRRERREHS 252
Query: 203 --------------TALTSLHQRISELEK 217
+AL L +R+SELE+
Sbjct: 253 LELERARSEAGEALSALRRLQRRVSELEE 281
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 37.0 bits (84), Expect = 0.035
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 52 EELRSSVLQLRET---VLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGR 108
E LR +LRE + +Q+E + Q+E +RE +L CE + + G
Sbjct: 199 ERLREQEERLREQEERLCEQEERLCEQEERLREQEERL--CEQE----------KLPGQE 246
Query: 109 KQPGSGKNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLEQYSRLNSSSQTNSLKDLLQS 168
+ + + R E L + + L ++ LE + Q +L++L
Sbjct: 247 RLLEEVEKLLKQERRQEEQERLLERERLLDEVEELLEQERLRQQDERLWQQETLREL--E 304
Query: 169 KIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKGQKDNRP 224
++ ELER + L E + PR+ EE + L Q++ ELEK P
Sbjct: 305 RLRELERMLELGWEALYEQRAEPRSGFEELNNENKSTLQLEQQVKELEKSGGAEEP 360
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 36.6 bits (83), Expect = 0.045
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 8/192 (4%)
Query: 37 VDADMCAASVAAGGAEELRSSVLQLRETVLQQKETILSQKETIRELTAKLGRCE---SQS 93
V A+ + A ++L + +QL V + E + ++E ELTAK + E S+
Sbjct: 891 VQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSEL 950
Query: 94 TLDPGAGEARAGGGRKQPGSGKNTMGDLSRTPAAETLSQLGQTLQSLKTRLENLEQYSRL 153
D E K+ + +N + +L+ A L ++ L K L+ Q +
Sbjct: 951 KRDIDDLELTLAKVEKEKHATENKVKNLTEEMAG--LDEIIAKLTKEKKALQEAHQQALD 1008
Query: 154 NSSSQTNSLKDLLQSKIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRIS 213
+ ++ + + L ++K+ +LE+QV +LE+ K + + K+E L + I
Sbjct: 1009 DLQAEEDKVNTLTKAKV-KLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIM 1067
Query: 214 ELE--KGQKDNR 223
+LE K Q D R
Sbjct: 1068 DLENDKQQLDER 1079
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 36.6 bits (83), Expect = 0.045
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 63 ETVLQQKETILSQKETIRELTAKLGRCESQSTLDPGAGEARAGGGRKQPGSGKNTMGDLS 122
E + +Q+E + Q+E + E +L CE + L E R K PG + + ++
Sbjct: 199 ERLREQEERLREQEERLHEQEERL--CEQEERLCEQ--EERLCEQEKLPGQ-ERLLEEVE 253
Query: 123 RTPAAETLSQLGQTL---QSLKTRLENLEQYSRLNSSS----QTNSLKDLLQSKIDELER 175
+ E + + L + L +E L + RL Q +L++L ++ ELER
Sbjct: 254 KLLEQERRQEEQERLLERERLLDEVEELLEQERLRQQDERLWQQETLREL--ERLRELER 311
Query: 176 QVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQRISELEKGQKDNRP 224
+ L E + PR+ EE + L Q++ ELEK P
Sbjct: 312 MLELGWEALYEQRAEPRSGFEELNNENKSTLQLEQQVKELEKSGGAEEP 360
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,234,278
Number of Sequences: 37866
Number of extensions: 781584
Number of successful extensions: 2606
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 2411
Number of HSP's gapped (non-prelim): 312
length of query: 432
length of database: 18,247,518
effective HSP length: 105
effective length of query: 327
effective length of database: 14,271,588
effective search space: 4666809276
effective search space used: 4666809276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.