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Search of human proteins with 55769539
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55769539 hypothetical protein LOC221416 [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55769539 hypothetical protein LOC221416 [Homo sapiens] 483 e-137
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.005
gi|102469037 jun D proto-oncogene [Homo sapiens] 37 0.012
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 37 0.012
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 37 0.012
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 37 0.012
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 37 0.020
gi|153792780 additional sex combs like 2 [Homo sapiens] 37 0.020
gi|24497589 aristaless related homeobox [Homo sapiens] 36 0.026
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 36 0.026
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 36 0.026
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 36 0.026
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 36 0.026
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 36 0.026
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 35 0.045
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 35 0.045
gi|239756985 PREDICTED: hypothetical protein XP_002345137 [Homo ... 35 0.059
gi|239751500 PREDICTED: hypothetical protein XP_002347885 [Homo ... 35 0.059
gi|239746001 PREDICTED: hypothetical protein XP_002344190 [Homo ... 35 0.059
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 35 0.077
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 35 0.077
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 35 0.077
gi|239748460 PREDICTED: hypothetical protein [Homo sapiens] 35 0.077
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ... 35 0.077
gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo ... 35 0.077
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.077
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 35 0.077
gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens] 34 0.10
>gi|55769539 hypothetical protein LOC221416 [Homo sapiens]
Length = 242
Score = 483 bits (1244), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MMPLAEAGALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSV 60
MMPLAEAGALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSV
Sbjct: 1 MMPLAEAGALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSV 60
Query: 61 SGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGP 120
SGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGP
Sbjct: 61 SGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGP 120
Query: 121 VERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCR 180
VERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCR
Sbjct: 121 VERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCR 180
Query: 181 PLRPLLGFRESDSAKPASLRLLQHTPSARRNYRIAGARLMRSNYPPPLSSAALRGAGPTR 240
PLRPLLGFRESDSAKPASLRLLQHTPSARRNYRIAGARLMRSNYPPPLSSAALRGAGPTR
Sbjct: 181 PLRPLLGFRESDSAKPASLRLLQHTPSARRNYRIAGARLMRSNYPPPLSSAALRGAGPTR 240
Query: 241 RN 242
RN
Sbjct: 241 RN 242
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.5 bits (88), Expect = 0.005
Identities = 63/249 (25%), Positives = 91/249 (36%), Gaps = 44/249 (17%)
Query: 17 SATEWACILRRKTPRHKQPTLLMVRASRRSG--KTSAVLKAGRQSVSGRKNSTSKDLVTL 74
SA W R ++P+ + + R+ +R G ++ + GR + R S S+ T
Sbjct: 518 SAQRWG---RSRSPQRRGRS----RSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATR 570
Query: 75 GASSLRE--ERGH-----PLHPRHRKAVHLRTRGRTR-------GWVQTLARMSRRTRGP 120
G S R RG P R R R R R+R +T AR RTR P
Sbjct: 571 GRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSP 630
Query: 121 VERAAAAAAAAAGGDAGHAPFPP--------PPAADGARAPRSPGQVTPRGLRLRLPRRE 172
V R + + + A + P PA G R+P + + R R R P R
Sbjct: 631 VRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRS-RSRTPAR- 688
Query: 173 SLLRGLCRPLRPLLGFRESDS--------AKPASLRLLQHTPSARRNYRIAGARLMRSNY 224
RG R P G S S ++ R + S R+N R RSN
Sbjct: 689 ---RGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNS 745
Query: 225 PPPLSSAAL 233
P + + +
Sbjct: 746 SPEMKKSRI 754
Score = 32.0 bits (71), Expect = 0.50
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 19/220 (8%)
Query: 31 RHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPR 90
R + P + R+ R+ S R SV+ R++ + V+ S R P+ R
Sbjct: 1877 RSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRS---RSRTPPVTRR 1933
Query: 91 HRKAVHLRTRGRTRGWVQTLARMSRRTR-GPVERAAAAAAAAAGGDAGHAPFPPPPAADG 149
++ TR R+R + R R+R PV R + + + P
Sbjct: 1934 RSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRR 1993
Query: 150 ARAPRSPGQVTPRGLRLR---LPRRES------LLRGLCRPLRPLLGFRESDSAKPASLR 200
+R+ SP VT R R R + RR S +R R PLL + S S P ++R
Sbjct: 1994 SRSRTSP--VTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIR 2051
Query: 201 LLQHTPSARRNYRIAGARLMRSNYPPPLSSAALRGAGPTR 240
S R R A + + PP + + G+ R
Sbjct: 2052 ----RRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDR 2087
Score = 30.8 bits (68), Expect = 1.1
Identities = 36/139 (25%), Positives = 50/139 (35%), Gaps = 7/139 (5%)
Query: 42 ASRRSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPL-HPRHRKAVHLRTR 100
A + S +TS+ + GR S+ + R P H R R L +R
Sbjct: 1826 ARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISR 1885
Query: 101 GRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVT 160
R+R ++R R+R V R + + A+ PP R RS T
Sbjct: 1886 RRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVT---RRRSRSRTPTT 1942
Query: 161 PRGLRLRLP---RRESLLR 176
R R R P RR S R
Sbjct: 1943 RRRSRSRTPPVTRRRSRSR 1961
Score = 28.1 bits (61), Expect = 7.2
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 2/132 (1%)
Query: 84 GHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPP 143
G P P K + + + + S + +++++++++ + +P P
Sbjct: 2593 GRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPA 2652
Query: 144 PPAADGARAPRSPGQVTPRGLRLRLPRR--ESLLRGLCRPLRPLLGFRESDSAKPASLRL 201
P P SP + P R R PR+ +SL P+ R S P +
Sbjct: 2653 KPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQS 2712
Query: 202 LQHTPSARRNYR 213
+RR R
Sbjct: 2713 SSSERGSRRGQR 2724
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 37.4 bits (85), Expect = 0.012
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 105 GWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPPPPA--ADGARAPRSP 156
G+V+ L + ++ + AAAAAAAAAGG +G A PP A A AP +P
Sbjct: 139 GFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPGELAPAAAAPEAP 192
Score = 27.7 bits (60), Expect = 9.4
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 110 LARMSRRTRGPVERAAAAAAAAAGGDAGHA---------PFPPPPAADGARAPR 154
LA + PV ++ A AGG G A PFPPPP PR
Sbjct: 182 LAPAAAAPEAPVYANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPR 235
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 37.4 bits (85), Expect = 0.012
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 76 ASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTR--------------GPV 121
ASSL R P PR R+R R+R ++L + RR+R GP
Sbjct: 24 ASSL--PRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
Query: 122 ERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCRP 181
++ A+ G A PPPP + R+ + R LR R SLLR L R
Sbjct: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERL 141
Query: 182 LRPLLGFRE 190
L RE
Sbjct: 142 RSSLSRLRE 150
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 37.4 bits (85), Expect = 0.012
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 76 ASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTR--------------GPV 121
ASSL R P PR R+R R+R ++L + RR+R GP
Sbjct: 24 ASSL--PRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
Query: 122 ERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCRP 181
++ A+ G A PPPP + R+ + R LR R SLLR L R
Sbjct: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERL 141
Query: 182 LRPLLGFRE 190
L RE
Sbjct: 142 RSSLSRLRE 150
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 37.4 bits (85), Expect = 0.012
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 76 ASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTR--------------GPV 121
ASSL R P PR R+R R+R ++L + RR+R GP
Sbjct: 24 ASSL--PRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLRRRSRSRSRPFSSGPSGPSGPS 81
Query: 122 ERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCRP 181
++ A+ G A PPPP + R+ + R LR R SLLR L R
Sbjct: 82 SPGGPSSGGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRRFRSRSLSLLRSLERL 141
Query: 182 LRPLLGFRE 190
L RE
Sbjct: 142 RSSLSRLRE 150
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 37.4 bits (85), Expect = 0.012
Identities = 31/69 (44%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 119 GPVERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGL 178
G +AAAAAAAA G AG A P PPA GA PG P GL P L L
Sbjct: 220 GAAAGSAAAAAAAAPGPAGAAS-PHPPAVGGA---PGPGPAGPGGLHAGAPAAGHSLFSL 275
Query: 179 CRPLRPLLG 187
P+ LLG
Sbjct: 276 --PVPSLLG 282
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 36.6 bits (83), Expect = 0.020
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 63 RKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVE 122
++N+ KD + G + EER PR RK + ++GR +G R++R E
Sbjct: 545 KENTKEKDKID-GTAEETEEREQAT-PRGRKTAN--SQGRRKG------RITRSMTN--E 592
Query: 123 RAAAAAAAAAGGDAGHAPFPPPP 145
AAA+AAAAA + P PPPP
Sbjct: 593 AAAASAAAAAATEEPPPPLPPPP 615
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 36.6 bits (83), Expect = 0.020
Identities = 52/170 (30%), Positives = 73/170 (42%), Gaps = 31/170 (18%)
Query: 85 HP--LHPRHRKAVHLRTRGRTRGWVQTLARMSRRTR-GPVERAAAAAAAAAGGDAGHAPF 141
HP + PR R V + + RT +TLA + + + +RAAAAAAAAA A
Sbjct: 632 HPSQVSPRARFPVSITSPNRTGA--RTLADIKAKAQLVKAQRAAAAAAAAAAAAASVGGT 689
Query: 142 PPPPAADGARAP-----------RSPG----QVTPRGLRLRLPRRESLLRGLCRPLRPLL 186
P P G + P SPG T +G L L S RG R L P
Sbjct: 690 IPGPGPGGGQGPGEGGEGQTARGGSPGSDRVSETGKGPTLELAGTGS--RGGTRELLPC- 746
Query: 187 GFRESDSAKPASLRLLQHTPSARRNYRIAGARLMRSNYPPPLSSAALRGA 236
+P S + TPS + + ++GA+L ++ PP + A+ GA
Sbjct: 747 ----GPETQPQS--ETKTTPSQAQPHSVSGAQLQQT--PPVPPTPAVSGA 788
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 36.2 bits (82), Expect = 0.026
Identities = 18/34 (52%), Positives = 18/34 (52%)
Query: 124 AAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPG 157
AAAAAA A G G AP PPPP A P G
Sbjct: 110 AAAAAATATAGPRGEAPPPPPPTARPGERPDGAG 143
Score = 28.1 bits (61), Expect = 7.2
Identities = 24/63 (38%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 111 ARMSRRTRGPVERAAAAAAAAAGGDA-------------------GHAPF-PPPPAADGA 150
AR R G AAAAAAAAA D APF PPPPA D
Sbjct: 133 ARPGERPDGAGAAAAAAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFVPPPPALDEL 192
Query: 151 RAP 153
P
Sbjct: 193 GGP 195
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 36.2 bits (82), Expect = 0.026
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 9 ALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTS 68
A+ G + E ++R+ + P+L + R GK + + R+ G +S
Sbjct: 314 AMENDDGRTEEEKHSAVQRQGSGRESPSL-----ASREGKYIPLPQRVREGPRGGVRCSS 368
Query: 69 KDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAA 128
G SSL P P H RG +RMS + + P+ R A
Sbjct: 369 SRGGRPGLSSLP-----PRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPL-RGAKTL 422
Query: 129 AAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLP 169
++ + +G PPPPA PRSP P + P
Sbjct: 423 SSPSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCP 463
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 36.2 bits (82), Expect = 0.026
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 9 ALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTS 68
A+ G + E ++R+ + P+L + R GK + + R+ G +S
Sbjct: 314 AMENDDGRTEEEKHSAVQRQGSGRESPSL-----ASREGKYIPLPQRVREGPRGGVRCSS 368
Query: 69 KDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAA 128
G SSL P P H RG +RMS + + P+ R A
Sbjct: 369 SRGGRPGLSSLP-----PRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPL-RGAKTL 422
Query: 129 AAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLP 169
++ + +G PPPPA PRSP P + P
Sbjct: 423 SSPSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCP 463
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 36.2 bits (82), Expect = 0.026
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 9 ALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTS 68
A+ G + E ++R+ + P+L + R GK + + R+ G +S
Sbjct: 314 AMENDDGRTEEEKHSAVQRQGSGRESPSL-----ASREGKYIPLPQRVREGPRGGVRCSS 368
Query: 69 KDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAA 128
G SSL P P H RG +RMS + + P+ R A
Sbjct: 369 SRGGRPGLSSLP-----PRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPL-RGAKTL 422
Query: 129 AAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLP 169
++ + +G PPPPA PRSP P + P
Sbjct: 423 SSPSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCP 463
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 36.2 bits (82), Expect = 0.026
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 9 ALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTS 68
A+ G + E ++R+ + P+L + R GK + + R+ G +S
Sbjct: 314 AMENDDGRTEEEKHSAVQRQGSGRESPSL-----ASREGKYIPLPQRVREGPRGGVRCSS 368
Query: 69 KDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAA 128
G SSL P P H RG +RMS + + P+ R A
Sbjct: 369 SRGGRPGLSSLP-----PRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPL-RGAKTL 422
Query: 129 AAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLP 169
++ + +G PPPPA PRSP P + P
Sbjct: 423 SSPSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCP 463
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 36.2 bits (82), Expect = 0.026
Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 11/161 (6%)
Query: 9 ALAQGGGPSATEWACILRRKTPRHKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTS 68
A+ G + E ++R+ + P+L + R GK + + R+ G +S
Sbjct: 314 AMENDDGRTEEEKHSAVQRQGSGRESPSL-----ASREGKYIPLPQRVREGPRGGVRCSS 368
Query: 69 KDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAA 128
G SSL P P H RG +RMS + + P+ R A
Sbjct: 369 SRGGRPGLSSLP-----PRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPL-RGAKTL 422
Query: 129 AAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLP 169
++ + +G PPPPA PRSP P + P
Sbjct: 423 SSPSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCP 463
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 35.4 bits (80), Expect = 0.045
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 10/142 (7%)
Query: 45 RSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTR 104
R + AV+ R++ GR LGA + + R P +A L+ G R
Sbjct: 62 RRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAP-LQVGGAPR 120
Query: 105 GWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGL 164
R + T GP R AAA G A AP P +A R PRG
Sbjct: 121 -------RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG- 172
Query: 165 RLRLPRRESLLRGLCRPLRPLL 186
L L R C LRPLL
Sbjct: 173 -LPPAPAAGLWRAGCTRLRPLL 193
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 35.4 bits (80), Expect = 0.045
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 10/142 (7%)
Query: 45 RSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTR 104
R + AV+ R++ GR LGA + + R P +A L+ G R
Sbjct: 62 RRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAP-LQVGGAPR 120
Query: 105 GWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGL 164
R + T GP R AAA G A AP P +A R PRG
Sbjct: 121 -------RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG- 172
Query: 165 RLRLPRRESLLRGLCRPLRPLL 186
L L R C LRPLL
Sbjct: 173 -LPPAPAAGLWRAGCTRLRPLL 193
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 35.4 bits (80), Expect = 0.045
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 10/142 (7%)
Query: 45 RSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTR 104
R + AV+ R++ GR LGA + + R P +A L+ G R
Sbjct: 62 RRRRQGAVIVGRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAP-LQVGGAPR 120
Query: 105 GWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGL 164
R + T GP R AAA G A AP P +A R PRG
Sbjct: 121 -------RRAHLTGGPPRRRPPRLAAAHGLPASEAPGLRPDSARTRLRLRLASARLPRG- 172
Query: 165 RLRLPRRESLLRGLCRPLRPLL 186
L L R C LRPLL
Sbjct: 173 -LPPAPAAGLWRAGCTRLRPLL 193
>gi|239756985 PREDICTED: hypothetical protein XP_002345137 [Homo
sapiens]
Length = 253
Score = 35.0 bits (79), Expect = 0.059
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 106 WVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAP-------FPPPPAADGARAPRSPGQ 158
W Q AR R + RA++AA G A FPPPP A APRS G
Sbjct: 127 WDQQGARARRGVGTRLGRASSAAVRRRLGRGEEAAAQGCSPLFPPPPVAGDTEAPRSCGG 186
Query: 159 VTPRGLRLRLPRRESLLRGLCRPLRPLLGFRESDSAKPASLRLLQHTPSARRNYRIAGAR 218
PR +R S L R P FR A+P P + R R+ G R
Sbjct: 187 -GPRPETVRGKPTSSCLPSQPRGRGPPQYFRTVTWAQP---------PPSWRRVRLRGRR 236
Query: 219 L 219
L
Sbjct: 237 L 237
>gi|239751500 PREDICTED: hypothetical protein XP_002347885 [Homo
sapiens]
Length = 253
Score = 35.0 bits (79), Expect = 0.059
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 106 WVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAP-------FPPPPAADGARAPRSPGQ 158
W Q AR R + RA++AA G A FPPPP A APRS G
Sbjct: 127 WDQQGARARRGVGTRLGRASSAAVRRRLGRGEEAAAQGCSPLFPPPPVAGDTEAPRSCGG 186
Query: 159 VTPRGLRLRLPRRESLLRGLCRPLRPLLGFRESDSAKPASLRLLQHTPSARRNYRIAGAR 218
PR +R S L R P FR A+P P + R R+ G R
Sbjct: 187 -GPRPETVRGKPTSSCLPSQPRGRGPPQYFRTVTWAQP---------PPSWRRVRLRGRR 236
Query: 219 L 219
L
Sbjct: 237 L 237
>gi|239746001 PREDICTED: hypothetical protein XP_002344190 [Homo
sapiens]
Length = 253
Score = 35.0 bits (79), Expect = 0.059
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 106 WVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAP-------FPPPPAADGARAPRSPGQ 158
W Q AR R + RA++AA G A FPPPP A APRS G
Sbjct: 127 WDQQGARARRGVGTRLGRASSAAVRRRLGRGEEAAAQGCSPLFPPPPVAGDTEAPRSCGG 186
Query: 159 VTPRGLRLRLPRRESLLRGLCRPLRPLLGFRESDSAKPASLRLLQHTPSARRNYRIAGAR 218
PR +R S L R P FR A+P P + R R+ G R
Sbjct: 187 -GPRPETVRGKPTSSCLPSQPRGRGPPQYFRTVTWAQP---------PPSWRRVRLRGRR 236
Query: 219 L 219
L
Sbjct: 237 L 237
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 34.7 bits (78), Expect = 0.077
Identities = 48/217 (22%), Positives = 76/217 (35%), Gaps = 40/217 (18%)
Query: 32 HKQPTLLMVRASRRSGKTSAVLKAGRQSVSGRKNSTSKDLVTLGASSLREERGH------ 85
H +P +LM++ G +AV K ++SG+ S S GA ++R +
Sbjct: 336 HPRPGILMLKTFGCRGFDAAVRKRKSPALSGQWQSPSPPPALAGAPPTPQQRQNFGPGCA 395
Query: 86 -----PLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGH-- 138
P P + G + TL + R P + A GG +G
Sbjct: 396 GLSPRPEGPHGAGGCPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGGGSGRFL 455
Query: 139 --------------APFPPPPAADGARAPRSPGQV----------TPRGLRLRLPRRESL 174
P P + G+ APR G P+ +LP R
Sbjct: 456 PGGGWRGARTKLRVCCTPAPGQSRGSLAPRPTGSAGRALAAARLFAPQRSAAQLPARCGC 515
Query: 175 L---RGLCRPLRPLLGFRESDSAKPASLRLLQHTPSA 208
RG+ P R L+G E+ A+ ++L H+P +
Sbjct: 516 FGSARGMRAPRRLLVGAEETAGARSKRGKVLAHSPQS 552
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 34.7 bits (78), Expect = 0.077
Identities = 48/140 (34%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 76 ASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGD 135
A SLR R P P R A R R R R R RG ERAAAAA GG
Sbjct: 196 AFSLRHSRAQPW-PSGRSAARRRRRLRRR-----------RRRG--ERAAAAAEFGLGGR 241
Query: 136 A----GHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCRPLRPLLG---F 188
G A PA ARAPR+ + P G+ PR P P G
Sbjct: 242 TCVWQGAAQHRARPAG-LARAPRARPR-DPAGVSRAPPRPRP------HPASPAPGDGAL 293
Query: 189 RESDSAKPASLRLLQHTPSA 208
R +++ PA+L L+Q P +
Sbjct: 294 RGAEATAPAALGLVQPRPKS 313
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 34.7 bits (78), Expect = 0.077
Identities = 48/140 (34%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 76 ASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGD 135
A SLR R P P R A R R R R R RG ERAAAAA GG
Sbjct: 196 AFSLRHSRAQPW-PSGRSAARRRRRLRRR-----------RRRG--ERAAAAAEFGLGGR 241
Query: 136 A----GHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCRPLRPLLG---F 188
G A PA ARAPR+ + P G+ PR P P G
Sbjct: 242 TCVWQGAAQHRARPAG-LARAPRARPR-DPAGVSRAPPRPRP------HPASPAPGDGAL 293
Query: 189 RESDSAKPASLRLLQHTPSA 208
R +++ PA+L L+Q P +
Sbjct: 294 RGAEATAPAALGLVQPRPKS 313
>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 34.7 bits (78), Expect = 0.077
Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 18/150 (12%)
Query: 92 RKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPPPPAADGAR 151
R+A R GR GW +A R P+ A AA G + R
Sbjct: 40 RRARFPRRSGRVGGWRAQVA--PHRPAEPLGLLADAAPVQREAGLGRWRW--------RR 89
Query: 152 APRSPGQVTPRGLRLRLPRRESLLRGLCRPLRPLLGFRESDSAKPASLRLLQHT-PSARR 210
R+ G +PR R P R + P R +AK S +L P A+
Sbjct: 90 RARAVGTCSPRASRAPPPGRPA-------SASPPAASRLPAAAKTTSPAVLSAVGPKAKT 142
Query: 211 NYRIAGARLMRSNYPPPLSSAALRGAGPTR 240
N + GA L R+ P P S AL+ G T+
Sbjct: 143 NSGLRGAVLSRAPPPAPCPSGALQRGGETK 172
>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
sapiens]
Length = 344
Score = 34.7 bits (78), Expect = 0.077
Identities = 48/140 (34%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 76 ASSLREERGHPLHPRHRKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGD 135
A SLR R P P R A R R R R R RG ERAAAAA GG
Sbjct: 196 AFSLRHSRAQPW-PSGRSAARRRRRLRRR-----------RRRG--ERAAAAAEFGLGGR 241
Query: 136 A----GHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESLLRGLCRPLRPLLG---F 188
G A PA ARAPR+ + P G+ PR P P G
Sbjct: 242 TCVWQGAAQHRARPAG-LARAPRARPR-DPAGVSRAPPRPRP------HPASPAPGDGAL 293
Query: 189 RESDSAKPASLRLLQHTPSA 208
R +++ PA+L L+Q P +
Sbjct: 294 RGAEATAPAALGLVQPRPKS 313
>gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
sapiens]
Length = 272
Score = 34.7 bits (78), Expect = 0.077
Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 18/150 (12%)
Query: 92 RKAVHLRTRGRTRGWVQTLARMSRRTRGPVERAAAAAAAAAGGDAGHAPFPPPPAADGAR 151
R+A R GR GW +A R P+ A AA G + R
Sbjct: 40 RRARFPRRSGRVGGWRAQVA--PHRPAEPLGLLADAAPVQREAGLGRWRW--------RR 89
Query: 152 APRSPGQVTPRGLRLRLPRRESLLRGLCRPLRPLLGFRESDSAKPASLRLLQHT-PSARR 210
R+ G +PR R P R + P R +AK S +L P A+
Sbjct: 90 RARAVGTCSPRASRAPPPGRPA-------SASPPAASRLPAAAKTTSPAVLSAVGPKAKT 142
Query: 211 NYRIAGARLMRSNYPPPLSSAALRGAGPTR 240
N + GA L R+ P P S AL+ G T+
Sbjct: 143 NSGLRGAVLSRAPPPAPCPSGALQRGGETK 172
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 34.7 bits (78), Expect = 0.077
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 120 PVERAAAAAAAAAGGDAGHAPFPPPP--AADGARAPRSPGQVTPR 162
P A A AA A G G AP PPP A G P+ PG +PR
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
Score = 33.9 bits (76), Expect = 0.13
Identities = 23/52 (44%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 109 TLARMSRRTRGPVERAAAA---AAAAAGGDAGHAPFPPPPAADGARAPRSPG 157
TLAR GP A A AAA GG AG AP P P A A PG
Sbjct: 279 TLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPG 330
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 124 AAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPGQVTPRGLRLRLPRRESL 174
AA A A AAGG AG + P P AA A AP + R ++ P ++L
Sbjct: 311 AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTL 361
Score = 27.7 bits (60), Expect = 9.4
Identities = 19/38 (50%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 120 PVERAAAAAAAAAGGDAGHAPFPPPPAADGARAPRSPG 157
PV AAA AA AG A P PAA ARA PG
Sbjct: 139 PVPAAAAVAAGPEPAPAGPAK-PAGPAALAARAGPGPG 175
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 34.7 bits (78), Expect = 0.077
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 53 LKAGRQSVSGRKNSTSKDLVTLGASSLREERGHPLHPRHRKAVHLRTRGRTRG 105
++AG + R+ T L L RG +H R R AVH R RGR RG
Sbjct: 798 MQAGEEVTELRRKYTELQLEAAKRGILSSGRGRGIHSRGRGAVHGRGRGRGRG 850
>gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens]
Length = 478
Score = 34.3 bits (77), Expect = 0.10
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 128 AAAAAGGDAGHAPFP--PPPAADGARAPRSPGQVTPRGLRLR 167
AAAAAGG G AP P PPP A AP S + P+ LR R
Sbjct: 2 AAAAAGGAPGPAPGPAGPPPPA----APTSAARAPPQALRRR 39
Score = 30.8 bits (68), Expect = 1.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 142 PPPPAADGARAPRSPGQVTPRGLRLRLPRRESLL 175
PPPP A+ P P P GL R P + LL
Sbjct: 71 PPPPPAEAREPPAPPPPEPPTGLPARTPAPQGLL 104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,117,636
Number of Sequences: 37866
Number of extensions: 561663
Number of successful extensions: 6220
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 5315
Number of HSP's gapped (non-prelim): 1053
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.