Guide to the Human Genome
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Name: LOC100286950 Sequence: fasta or formatted (253aa) NCBI GI: 239746001
Description:

PREDICTED: hypothetical protein XP_002344190

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         29           5
 C cysteine            4.0         10           3
 D aspartate           3.2          8           1
 E glutamate           4.0         10           2
 F phenylalanine       3.2          8           1
 G glycine            11.5         29           3
 H histidine           0.8          2           1
 I isoleucine          0.8          2           1
 K lysine              2.8          7           1
 L leucine             5.9         15           1
 M methionine          0.8          2           1
 N asparagine          1.6          4           1
 P proline            11.5         29           4
 Q glutamine           3.6          9           2
 R arginine           10.3         26           3
 S serine              9.1         23           2
 T threonine           6.3         16           2
 V valine              6.3         16           2
 W tryptophan          2.4          6           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344190 
LOC100292095          1.000   PREDICTED: hypothetical protein XP_002345137 
LOC100291303          1.000   PREDICTED: hypothetical protein XP_002347885 
MYO15A                0.033   myosin XV 
LOC100130506          0.030   PREDICTED: hypothetical protein 
LOC100288911          0.030   PREDICTED: hypothetical protein XP_002342241 
PRH1                  0.026   proline-rich protein HaeIII subfamily 1 
PRH2                  0.026   proline-rich protein HaeIII subfamily 2 
PRH2                  0.026   proline-rich protein HaeIII subfamily 2 
LOC729570             0.024   PREDICTED: hypothetical protein 
LOC100287499          0.024   PREDICTED: hypothetical protein 
LOC729570             0.024   PREDICTED: hypothetical protein 
LOC100287499          0.024   PREDICTED: hypothetical protein XP_002343643 
LOC729570             0.024   PREDICTED: hypothetical protein 
FAM155B               0.022   transmembrane protein 28 
LOC100291076          0.020   PREDICTED: hypothetical protein XP_002347846 
LOC100289949          0.020   PREDICTED: hypothetical protein XP_002346877 
LOC100287104          0.020   PREDICTED: hypothetical protein XP_002343630 
DAB2IP                0.020   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.020   disabled homolog 2 interacting protein isoform 1 [Ho...
LOC441086             0.020   PREDICTED: hypothetical protein 
LOC441086             0.020   PREDICTED: hypothetical protein 
BAT2                  0.020   HLA-B associated transcript-2 
CABIN1                0.020   calcineurin binding protein 1 
FAM63B                0.020   hypothetical protein LOC54629 isoform a 
FAM63B                0.020   hypothetical protein LOC54629 isoform b 
C6orf223              0.020   hypothetical protein LOC221416 
CHMP1A                0.018   chromatin modifying protein 1A isoform 1 
TAF4                  0.018   TBP-associated factor 4 
SYN1                  0.016   synapsin I isoform Ia 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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