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Search of human proteins with 55749659
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55749659 UHRF1 (ICBP90) binding protein 1-like isoform b
[Homo sapiens]
(522 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55749659 UHRF1 (ICBP90) binding protein 1-like isoform b [Hom... 1048 0.0
gi|55749644 UHRF1 (ICBP90) binding protein 1-like isoform a [Hom... 1037 0.0
gi|134152667 ICBP90 binding protein 1 [Homo sapiens] 583 e-166
gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens] 54 5e-07
gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens] 54 5e-07
gi|119874215 vacuolar protein sorting 13B isoform 4 [Homo sapiens] 54 5e-07
gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens] 54 5e-07
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] 43 6e-04
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] 43 6e-04
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens] 37 0.044
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens] 37 0.044
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens] 37 0.044
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens] 37 0.044
gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom... 35 0.22
gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom... 35 0.22
gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens] 34 0.28
gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom... 34 0.28
gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom... 34 0.28
gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens] 33 0.49
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505294 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505284 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505282 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505280 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505278 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
gi|38505276 voltage-dependent calcium channel alpha 1G subunit i... 32 1.1
>gi|55749659 UHRF1 (ICBP90) binding protein 1-like isoform b [Homo
sapiens]
Length = 522
Score = 1048 bits (2710), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK
Sbjct: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
Query: 61 VFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRSPNGPSPIATASGQSEYGFAEK 120
VFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRSPNGPSPIATASGQSEYGFAEK
Sbjct: 61 VFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRSPNGPSPIATASGQSEYGFAEK 120
Query: 121 VVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWEHGDLRFTRIQDPQRGEVLTF 180
VVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWEHGDLRFTRIQDPQRGEVLTF
Sbjct: 121 VVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWEHGDLRFTRIQDPQRGEVLTF 180
Query: 181 KEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDD 240
KEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDD
Sbjct: 181 KEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDD 240
Query: 241 LLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTVVASAQQVKTTQTSNAP 300
LLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTVVASAQQVKTTQTSNAP
Sbjct: 241 LLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTVVASAQQVKTTQTSNAP 300
Query: 301 DVNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRITGGAMQLSFTQLTI 360
DVNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRITGGAMQLSFTQLTI
Sbjct: 301 DVNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRITGGAMQLSFTQLTI 360
Query: 361 DYYPYHKAGDSCNHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPT 420
DYYPYHKAGDSCNHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPT
Sbjct: 361 DYYPYHKAGDSCNHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPT 420
Query: 421 HASPQHTQTEKDYPLKGTCRTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSP 480
HASPQHTQTEKDYPLKGTCRTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSP
Sbjct: 421 HASPQHTQTEKDYPLKGTCRTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSP 480
Query: 481 KSMICCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPTAFLSR 522
KSMICCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPTAFLSR
Sbjct: 481 KSMICCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFPTAFLSR 522
>gi|55749644 UHRF1 (ICBP90) binding protein 1-like isoform a [Homo
sapiens]
Length = 1464
Score = 1037 bits (2682), Expect = 0.0
Identities = 516/516 (100%), Positives = 516/516 (100%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK
Sbjct: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
Query: 61 VFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRSPNGPSPIATASGQSEYGFAEK 120
VFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRSPNGPSPIATASGQSEYGFAEK
Sbjct: 61 VFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRSPNGPSPIATASGQSEYGFAEK 120
Query: 121 VVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWEHGDLRFTRIQDPQRGEVLTF 180
VVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWEHGDLRFTRIQDPQRGEVLTF
Sbjct: 121 VVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWEHGDLRFTRIQDPQRGEVLTF 180
Query: 181 KEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDD 240
KEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDD
Sbjct: 181 KEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDD 240
Query: 241 LLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTVVASAQQVKTTQTSNAP 300
LLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTVVASAQQVKTTQTSNAP
Sbjct: 241 LLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTVVASAQQVKTTQTSNAP 300
Query: 301 DVNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRITGGAMQLSFTQLTI 360
DVNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRITGGAMQLSFTQLTI
Sbjct: 301 DVNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEKESNRRITGGAMQLSFTQLTI 360
Query: 361 DYYPYHKAGDSCNHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPT 420
DYYPYHKAGDSCNHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPT
Sbjct: 361 DYYPYHKAGDSCNHWMYFSDATKTKNGWANELLHEFECNVEMLKQAVKDHNVGSPPKSPT 420
Query: 421 HASPQHTQTEKDYPLKGTCRTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSP 480
HASPQHTQTEKDYPLKGTCRTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSP
Sbjct: 421 HASPQHTQTEKDYPLKGTCRTPSVLSQQSKAKLMSSSVVVRLADFNIYQVSTAEQCRSSP 480
Query: 481 KSMICCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFP 516
KSMICCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFP
Sbjct: 481 KSMICCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFP 516
>gi|134152667 ICBP90 binding protein 1 [Homo sapiens]
Length = 1440
Score = 583 bits (1503), Expect = e-166
Identities = 303/537 (56%), Positives = 382/537 (71%), Gaps = 34/537 (6%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEG+L NLELDEEVLQN+L+LPTWLAI +
Sbjct: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITR 60
Query: 61 VFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRSPNGPSPIATASGQSEYGFAEK 120
V+CN+ASIRI WTKLKTHPICL LDKV +EM TCE+PR PNG SPIA ASGQSEYGFAEK
Sbjct: 61 VYCNRASIRIQWTKLKTHPICLCLDKVEVEMKTCEDPRPPNGQSPIALASGQSEYGFAEK 120
Query: 121 VVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWEHGDLRFTRIQDPQRGEVLTF 180
VVEG+ + VNSI I+I +KAF+ASFEL QL+ YSVN +W+ DLR TRI DP RGEVLTF
Sbjct: 121 VVEGMFIIVNSITIKIHSKAFHASFELWQLQGYSVNPNWQQSDLRLTRITDPCRGEVLTF 180
Query: 181 KEINWQMIRIEADATQSSHLEIMCAPVRLITNQSKIRVTLKRRLKDCNVIATKLVLILDD 240
KEI WQ +RIEADAT + + + P+RLITNQ +I++ LKRR KDCNVI++KL+ +LDD
Sbjct: 181 KEITWQTLRIEADATDNGDQDPVTTPLRLITNQGRIQIALKRRTKDCNVISSKLMFLLDD 240
Query: 241 LLWVLTDSQLKAMVQYAKSLSEAIEKSTEQRKSMAPEPTQSSTVVASAQQVKTT----QT 296
LLWVLTDSQLKAM++YA+SLSEA+EKS QRKS+APEP Q + SAQQ
Sbjct: 241 LLWVLTDSQLKAMMKYAESLSEAMEKSAHQRKSLAPEPVQITPPAPSAQQSWAQAFGGSQ 300
Query: 297 SNAPDVNDAIVKLFNDFDVKETSHHLVISHLDLHICDDIHAKEK-ESNRRITGGAMQLSF 355
N+ + + + F FDVKE+S+HL+IS LDLHICDD ++E S R+ GGAMQL+F
Sbjct: 301 GNSNSSSSRLSQYFEKFDVKESSYHLLISRLDLHICDDSQSREPGVSANRLMGGAMQLTF 360
Query: 356 TQLTIDYYPYHKAGDSCNHWMYFSDATKTKNGWANELLHEFECNVEMLKQAV-------- 407
++ DYYP+H AGDSC HW+ +A +T+ WA +L+ EF+ +E +
Sbjct: 361 RKMAFDYYPFHWAGDSCKHWVRHCEAMETRGQWAQKLVMEFQSKMEKWHEETGLKPPWHL 420
Query: 408 --------KDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQQSKAKLMSSSVV 459
K ++ SP K+P SP + P + +L SS +V
Sbjct: 421 GVDSLFRRKADSLSSPRKNPLERSPSQGRQPAFQP-------------PAWNRLRSSCMV 467
Query: 460 VRLADFNIYQVSTAEQCRSSPKSMICCNKKSLYLPQEMSAVYIEFTEYYYPDGKDFP 516
VR+ D +I+QVSTA Q P +++ C++K LP ++SA++IEFTEYY+PD ++ P
Sbjct: 468 VRVDDLDIHQVSTAGQPSKKPSTLLSCSRKLHNLPTQVSAIHIEFTEYYFPDNQELP 524
>gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens]
Length = 4022
Score = 53.5 bits (127), Expect = 5e-07
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 9 ILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASI 68
++ +++R+ KNL P + LS G+ L LEL +VL+ L LP + ++ I
Sbjct: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHI--HELRI 67
Query: 69 RIPWTKLKTHPICLSLD--KVIMEM------------------STCEEPRSPNGPSPIAT 108
+PWTKL + P+ ++++ + I+++ ST E +S P +
Sbjct: 68 HVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQ 127
Query: 109 ASGQSE-------YGFAEKVVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWE 160
A+ +VV +++ +N+++++ S ++ Y+V W+
Sbjct: 128 AAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWD 186
>gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens]
Length = 3997
Score = 53.5 bits (127), Expect = 5e-07
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 9 ILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASI 68
++ +++R+ KNL P + LS G+ L LEL +VL+ L LP + ++ I
Sbjct: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHI--HELRI 67
Query: 69 RIPWTKLKTHPICLSLD--KVIMEM------------------STCEEPRSPNGPSPIAT 108
+PWTKL + P+ ++++ + I+++ ST E +S P +
Sbjct: 68 HVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQ 127
Query: 109 ASGQSE-------YGFAEKVVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWE 160
A+ +VV +++ +N+++++ S ++ Y+V W+
Sbjct: 128 AAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWD 186
>gi|119874215 vacuolar protein sorting 13B isoform 4 [Homo sapiens]
Length = 415
Score = 53.5 bits (127), Expect = 5e-07
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 9 ILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASI 68
++ +++R+ KNL P + LS G+ L LEL +VL+ L LP + ++ I
Sbjct: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHI--HELRI 67
Query: 69 RIPWTKLKTHPICLSLD--KVIMEM------------------STCEEPRSPNGPSPIAT 108
+PWTKL + P+ ++++ + I+++ ST E +S P +
Sbjct: 68 HVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQ 127
Query: 109 ASGQSE-------YGFAEKVVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWE 160
A+ +VV +++ +N+++++ S ++ Y+V W+
Sbjct: 128 AAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWD 186
>gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens]
Length = 863
Score = 53.5 bits (127), Expect = 5e-07
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 9 ILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASI 68
++ +++R+ KNL P + LS G+ L LEL +VL+ L LP + ++ I
Sbjct: 10 LMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHI--HELRI 67
Query: 69 RIPWTKLKTHPICLSLD--KVIMEM------------------STCEEPRSPNGPSPIAT 108
+PWTKL + P+ ++++ + I+++ ST E +S P +
Sbjct: 68 HVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQ 127
Query: 109 ASGQSE-------YGFAEKVVEGISVSVNSIVIRIGAKAFNASFELSQLRIYSVNAHWE 160
A+ +VV +++ +N+++++ S ++ Y+V W+
Sbjct: 128 AAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWD 186
>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
Length = 4363
Score = 43.1 bits (100), Expect = 6e-04
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
+ G++ + +L ++ NL+ D+++++ LKG EL+NL L ++ L+ L+LP +
Sbjct: 2 LEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDALKE-LELP--FEVKA 58
Query: 61 VFCNKASIRIPWTKLKTHPICLSLDKV 87
F K +++IP+ + P +S+ +
Sbjct: 59 GFIGKVTLQIPFYRPHVDPWVISISSL 85
>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
Length = 4388
Score = 43.1 bits (100), Expect = 6e-04
Identities = 23/87 (26%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
+ G++ + +L ++ NL+ D+++++ LKG EL+NL L ++ L+ L+LP +
Sbjct: 2 LEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDALKE-LELP--FEVKA 58
Query: 61 VFCNKASIRIPWTKLKTHPICLSLDKV 87
F K +++IP+ + P +S+ +
Sbjct: 59 GFIGKVTLQIPFYRPHVDPWVISISSL 85
>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
Length = 3095
Score = 37.0 bits (84), Expect = 0.044
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 11 KHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRI 70
+ L + +L +++L KG LKNL++ E L + LD+P + + + + I
Sbjct: 13 RFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENAL-SQLDVPFKVKVGHI--GNLKLII 69
Query: 71 PWTKLKTHPICLSLDKVIM 89
PW L T P+ L+++ +
Sbjct: 70 PWKNLYTQPVEAVLEEIYL 88
>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
Length = 3069
Score = 37.0 bits (84), Expect = 0.044
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 11 KHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRI 70
+ L + +L +++L KG LKNL++ E L + LD+P + + + + I
Sbjct: 13 RFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENAL-SQLDVPFKVKVGHI--GNLKLII 69
Query: 71 PWTKLKTHPICLSLDKVIM 89
PW L T P+ L+++ +
Sbjct: 70 PWKNLYTQPVEAVLEEIYL 88
>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
Length = 3174
Score = 37.0 bits (84), Expect = 0.044
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 11 KHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRI 70
+ L + +L +++L KG LKNL++ E L + LD+P + + + + I
Sbjct: 13 RFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENAL-SQLDVPFKVKVGHI--GNLKLII 69
Query: 71 PWTKLKTHPICLSLDKVIM 89
PW L T P+ L+++ +
Sbjct: 70 PWKNLYTQPVEAVLEEIYL 88
>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
Length = 3135
Score = 37.0 bits (84), Expect = 0.044
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 11 KHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRI 70
+ L + +L +++L KG LKNL++ E L + LD+P + + + + I
Sbjct: 13 RFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENAL-SQLDVPFKVKVGHI--GNLKLII 69
Query: 71 PWTKLKTHPICLSLDKVIM 89
PW L T P+ L+++ +
Sbjct: 70 PWKNLYTQPVEAVLEEIYL 88
>gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo
sapiens]
Length = 3710
Score = 34.7 bits (78), Expect = 0.22
Identities = 34/192 (17%), Positives = 73/192 (38%), Gaps = 36/192 (18%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
+ ++ + + L + +NL+ ++ L G L NL++ E L LD+P + +
Sbjct: 3 LESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENALSE-LDVPFKVKAGQ 61
Query: 61 VFCNKASIRIPWTKLKTHPICLSLDKVIM-------------------------EMSTCE 95
+ +K +++IPW L + +L+ + + E+S E
Sbjct: 62 I--DKLTLKIPWKNLYGEAVVATLEGLYLLVVPGASIKYDAVKEEKSLQDVKQKELSRIE 119
Query: 96 E--PRSPNGPSPIATASGQSEYGFAEKVVEGISVSVNSIVIRI------GAKAFNASFEL 147
E ++ P A +V++ + V + I I+ + + L
Sbjct: 120 EALQKAAEKDKPKEAKKDTFVEKLATQVIKNVQVKITDIHIKYEDDVTDPKRPLSFGVTL 179
Query: 148 SQLRIYSVNAHW 159
+L + + N HW
Sbjct: 180 GELSLLTANEHW 191
>gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo
sapiens]
Length = 3585
Score = 34.7 bits (78), Expect = 0.22
Identities = 34/192 (17%), Positives = 73/192 (38%), Gaps = 36/192 (18%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
+ ++ + + L + +NL+ ++ L G L NL++ E L LD+P + +
Sbjct: 3 LESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENALSE-LDVPFKVKAGQ 61
Query: 61 VFCNKASIRIPWTKLKTHPICLSLDKVIM-------------------------EMSTCE 95
+ +K +++IPW L + +L+ + + E+S E
Sbjct: 62 I--DKLTLKIPWKNLYGEAVVATLEGLYLLVVPGASIKYDAVKEEKSLQDVKQKELSRIE 119
Query: 96 E--PRSPNGPSPIATASGQSEYGFAEKVVEGISVSVNSIVIRI------GAKAFNASFEL 147
E ++ P A +V++ + V + I I+ + + L
Sbjct: 120 EALQKAAEKDKPKEAKKDTFVEKLATQVIKNVQVKITDIHIKYEDDVTDPKRPLSFGVTL 179
Query: 148 SQLRIYSVNAHW 159
+L + + N HW
Sbjct: 180 GELSLLTANEHW 191
>gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens]
Length = 2078
Score = 34.3 bits (77), Expect = 0.28
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 5 IKKQILKHLSR------FTKNLSPDKINLSTLKGEGELKNLELDEEVLQNML---DLPTW 55
IKK+ ++L + + LS ++++L +G G L + LD+ L +L D P
Sbjct: 9 IKKRACRYLLQRYLGHFLQEKLSLEQLSLDLYQGTGSLAQVPLDKWCLNEILESADAP-- 66
Query: 56 LAINKVFCNKASIRIPWTKLKTHPICLSLDKVIMEMSTCEEPRSPNGPSPIATAS 110
L + + F S+ +PW L L + +EM PR G P+ +S
Sbjct: 67 LEVTEGFIQSISLSVPWGSLLQDNCALEVRG--LEMVFRPRPRPATGSEPMYWSS 119
>gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo
sapiens]
Length = 3628
Score = 34.3 bits (77), Expect = 0.28
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
+ ++ + + L + +NL+ ++ L G L NL++ E L LD+P + +
Sbjct: 3 LESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENALSE-LDVPFKVKAGQ 61
Query: 61 VFCNKASIRIPWTKLKTHPICLSLD 85
+ +K +++IPW L + +L+
Sbjct: 62 I--DKLTLKIPWKNLYGEAVVATLE 84
>gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo
sapiens]
Length = 3753
Score = 34.3 bits (77), Expect = 0.28
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 1 MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINK 60
+ ++ + + L + +NL+ ++ L G L NL++ E L LD+P + +
Sbjct: 3 LESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENALSE-LDVPFKVKAGQ 61
Query: 61 VFCNKASIRIPWTKLKTHPICLSLD 85
+ +K +++IPW L + +L+
Sbjct: 62 I--DKLTLKIPWKNLYGEAVVATLE 84
>gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens]
Length = 2354
Score = 33.5 bits (75), Expect = 0.49
Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 31/190 (16%)
Query: 325 SHLDLHICDDIHAK-EKESNRRITGGAMQLSFTQLTIDYYPYHKAGDSCNHWMYFSDATK 383
++L+ H+ H ++S R+I ++ F Q + ++PYH C D T
Sbjct: 16 NNLEQHLFSAQHRSLTRQSRRQICTSSLMERFLQDVLQHHPYH-----CQESSSTQDETH 70
Query: 384 TKNGWANELLH---EFECNVEMLKQAVKDHNVG-------SPPKSPTHASPQHTQTEKDY 433
G ++E++H F E + V+D + S P H+ P +Q
Sbjct: 71 VNTGSSSEVVHLDDAFSEEEEEDEDKVEDEDATEERPSEVSEPIEELHSRPHKSQ----- 125
Query: 434 PLKGTCRT---PSVLSQQSKAKLMSSSVVVRLA----DFNIYQVSTAEQCRSS-PKSMIC 485
+GT PSV+ + K + V ++ N+ + A RS+ + +
Sbjct: 126 --EGTQEVSVRPSVIQKLEKGQQQPLEFVHKIGASVRKCNLVDIGQATNNRSNLVRPPVI 183
Query: 486 CNKKSLYLPQ 495
CN + LP+
Sbjct: 184 CNAPASCLPE 193
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505294 voltage-dependent calcium channel alpha 1G subunit
isoform 15 [Homo sapiens]
Length = 1555
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
isoform 3 [Homo sapiens]
Length = 2343
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
isoform 13 [Homo sapiens]
Length = 2243
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
isoform 12 [Homo sapiens]
Length = 2250
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
isoform 10 [Homo sapiens]
Length = 2266
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505284 voltage-dependent calcium channel alpha 1G subunit
isoform 4 [Homo sapiens]
Length = 2332
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505282 voltage-dependent calcium channel alpha 1G subunit
isoform 8 [Homo sapiens]
Length = 2284
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505280 voltage-dependent calcium channel alpha 1G subunit
isoform 6 [Homo sapiens]
Length = 2306
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505278 voltage-dependent calcium channel alpha 1G subunit
isoform 11 [Homo sapiens]
Length = 2261
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
>gi|38505276 voltage-dependent calcium channel alpha 1G subunit
isoform 5 [Homo sapiens]
Length = 2321
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 391 ELLHEF---ECNVEMLKQAVKDHNVGSPPKSPTHASPQHTQTEKDYPLKGTCRTPSVLSQ 447
E +H F +C++E ++ PP+SP+ AS + + K YP T P L +
Sbjct: 551 ESVHSFYHADCHLEPVRCQAP------PPRSPSEASGRTVGSGKVYPTVHTSPPPETLKE 604
Query: 448 QSKAKLMSSSVVVRLADFNI 467
++ ++ +SS L NI
Sbjct: 605 KALVEVAASSGPPTLTSLNI 624
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,756,122
Number of Sequences: 37866
Number of extensions: 771518
Number of successful extensions: 2679
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2631
Number of HSP's gapped (non-prelim): 58
length of query: 522
length of database: 18,247,518
effective HSP length: 107
effective length of query: 415
effective length of database: 14,195,856
effective search space: 5891280240
effective search space used: 5891280240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.