VPS13A 34541

Name: VPS13A	Sequence: fasta or formatted (3135aa)		NCBI GI: 66346672
Description: vacuolar protein sorting 13A isoform C		Referenced in: ER, Golgi, and the Secretory Pathway
Other entries for this name: alt prot [3095aa] vacuolar protein sorting 13A isoform B alt prot [3174aa] vacuolar protein sorting 13A isoform A alt prot [3069aa] vacuolar protein sorting 13A isoform D
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 170 2 C cysteine 1.0 30 1 D aspartate 5.0 158 2 E glutamate 7.7 242 3 F phenylalanine 4.6 144 2 G glycine 4.5 142 2 H histidine 2.2 68 3 I isoleucine 7.1 222 2 K lysine 7.9 247 3 L leucine 9.9 310 4 M methionine 2.6 83 3 N asparagine 4.3 134 3 P proline 4.7 146 3 Q glutamine 4.0 126 2 R arginine 3.5 111 2 S serine 7.2 225 2 T threonine 6.3 199 2 V valine 7.6 239 3 W tryptophan 1.1 36 2 Y tyrosine 3.3 103 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 13A isoform C VPS13A 0.997 vacuolar protein sorting 13A isoform A VPS13A 0.961 vacuolar protein sorting 13A isoform B VPS13A 0.961 vacuolar protein sorting 13A isoform D VPS13C 0.262 vacuolar protein sorting 13C protein isoform 1A [Hom... VPS13C 0.262 vacuolar protein sorting 13C protein isoform 2A [Hom... VPS13C 0.259 vacuolar protein sorting 13C protein isoform 1B [Hom... VPS13C 0.259 vacuolar protein sorting 13C protein isoform 2B [Hom... VPS13D 0.030 vacuolar protein sorting 13D isoform 2 VPS13D 0.030 vacuolar protein sorting 13D isoform 1 VPS13B 0.013 vacuolar protein sorting 13B isoform 5 VPS13B 0.013 vacuolar protein sorting 13B isoform 1 VPS13B 0.008 vacuolar protein sorting 13B isoform 4 VPS13B 0.008 vacuolar protein sorting 13B isoform 3 ATG2A 0.004 autophagy related 2A ATG2B 0.003 ATG2 autophagy related 2 homolog B KIF20B 0.003 M-phase phosphoprotein 1 UHRF1BP1L 0.002 UHRF1 (ICBP90) binding protein 1-like isoform b [Hom... UHRF1BP1L 0.002 UHRF1 (ICBP90) binding protein 1-like isoform a [Hom... TLX1 0.002 T-cell leukemia homeobox 1 LRBA 0.002 LPS-responsive vesicle trafficking, beach and ancho... AKAP9 0.001 A-kinase anchor protein 9 isoform 2 AKAP9 0.001 A-kinase anchor protein 9 isoform 3 GCOM1 0.001 GRINL1A combined protein isoform 8 RNF8 0.001 ring finger protein 8 isoform 2 RNF8 0.001 ring finger protein 8 isoform 1 APOA4 0.001 apolipoprotein A-IV precursor TLR5 0.001 toll-like receptor 5 GCOM1 0.001 GRINL1A combined protein isoform 2 GCOM1 0.001 GRINL1A combined protein isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.