Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: VPS13A Sequence: fasta or formatted (3135aa) NCBI GI: 66346672
Description:

vacuolar protein sorting 13A isoform C

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [3095aa] vacuolar protein sorting 13A isoform B
alt prot [3174aa] vacuolar protein sorting 13A isoform A
alt prot [3069aa] vacuolar protein sorting 13A isoform D
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4        170           2
 C cysteine            1.0         30           1
 D aspartate           5.0        158           2
 E glutamate           7.7        242           3
 F phenylalanine       4.6        144           2
 G glycine             4.5        142           2
 H histidine           2.2         68           3
 I isoleucine          7.1        222           2
 K lysine              7.9        247           3
 L leucine             9.9        310           4
 M methionine          2.6         83           3
 N asparagine          4.3        134           3
 P proline             4.7        146           3
 Q glutamine           4.0        126           2
 R arginine            3.5        111           2
 S serine              7.2        225           2
 T threonine           6.3        199           2
 V valine              7.6        239           3
 W tryptophan          1.1         36           2
 Y tyrosine            3.3        103           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 13A isoform C 
VPS13A                0.997   vacuolar protein sorting 13A isoform A 
VPS13A                0.961   vacuolar protein sorting 13A isoform B 
VPS13A                0.961   vacuolar protein sorting 13A isoform D 
VPS13C                0.262   vacuolar protein sorting 13C protein isoform 1A [Hom...
VPS13C                0.262   vacuolar protein sorting 13C protein isoform 2A [Hom...
VPS13C                0.259   vacuolar protein sorting 13C protein isoform 1B [Hom...
VPS13C                0.259   vacuolar protein sorting 13C protein isoform 2B [Hom...
VPS13D                0.030   vacuolar protein sorting 13D isoform 2 
VPS13D                0.030   vacuolar protein sorting 13D isoform 1 
VPS13B                0.013   vacuolar protein sorting 13B isoform 5 
VPS13B                0.013   vacuolar protein sorting 13B isoform 1 
VPS13B                0.008   vacuolar protein sorting 13B isoform 4 
VPS13B                0.008   vacuolar protein sorting 13B isoform 3 
ATG2A                 0.004   autophagy related 2A 
ATG2B                 0.003   ATG2 autophagy related 2 homolog B 
KIF20B                0.003   M-phase phosphoprotein 1 
UHRF1BP1L             0.002   UHRF1 (ICBP90) binding protein 1-like isoform b [Hom...
UHRF1BP1L             0.002   UHRF1 (ICBP90) binding protein 1-like isoform a [Hom...
TLX1                  0.002   T-cell leukemia homeobox 1 
LRBA                  0.002   LPS-responsive vesicle trafficking, beach and ancho...
AKAP9                 0.001   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.001   A-kinase anchor protein 9 isoform 3 
GCOM1                 0.001   GRINL1A combined protein isoform 8 
RNF8                  0.001   ring finger protein 8 isoform 2 
RNF8                  0.001   ring finger protein 8 isoform 1 
APOA4                 0.001   apolipoprotein A-IV precursor 
TLR5                  0.001   toll-like receptor 5 
GCOM1                 0.001   GRINL1A combined protein isoform 2 
GCOM1                 0.001   GRINL1A combined protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press