Search of human proteins with 54873619

Search of human proteins with 54873619

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3F isoform b [Homo sapiens]
         (101 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic poly...   219   5e-58
gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic poly...   127   1e-30
gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic poly...   124   2e-29
gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly...    69   8e-13
gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic pol...    65   9e-12
gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic poly...    39   0.001
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp...    29   0.70 
gi|63055040 PPPDE peptidase domain containing 2 [Homo sapiens]         29   0.70 
gi|4758326 coagulation factor II (thrombin) receptor-like 2 prec...    28   1.6  
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ...    27   3.5  
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [...    27   3.5  
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ...    27   3.5  
gi|38093637 Nance-Horan syndrome protein isoform 1 [Homo sapiens]      27   3.5  
gi|31542327 solute carrier family 22, member 16 [Homo sapiens]         27   4.5  
gi|45545405 nuclear receptor subfamily 5, group A, member 2 isof...    26   5.9  
gi|4504343 nuclear receptor subfamily 5, group A, member 2 isofo...    26   5.9  
gi|17136078 VGF nerve growth factor inducible precursor [Homo sa...    26   5.9  
gi|229577238 tetratricopeptide repeat domain 18 [Homo sapiens]         26   7.7  

>gi|54873619 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3F isoform b [Homo sapiens]
          Length = 101

 Score =  219 bits (557), Expect = 5e-58
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVPR 60
           MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVPR
Sbjct: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVPR 60

Query: 61  SFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTAGREQGRP 101
           SFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTAGREQGRP
Sbjct: 61  SFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTAGREQGRP 101


>gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3F isoform a [Homo sapiens]
          Length = 373

 Score =  127 bits (320), Expect = 1e-30
 Identities = 65/89 (73%), Positives = 68/89 (76%), Gaps = 1/89 (1%)

Query: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV-P 59
          MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV  
Sbjct: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS 60

Query: 60 RSFIRAPFQVLSSPFGQCAPPHGTAQVQW 88
          +    A    LS   G   P +   Q+ W
Sbjct: 61 QPEHHAEMCFLSWFCGNQLPAYKCFQITW 89



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPRLDAKIFRGQV- 58
           +K   RN +E MY   F ++F N      RN  WLC+ ++  K  S       +FR QV 
Sbjct: 184 LKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVD 243

Query: 59  PRSFIRAPFQVLSSPFGQCAPPHGTAQVQW 88
           P +   A    LS        P+   +V W
Sbjct: 244 PETHCHAERCFLSWFCDDILSPNTNYEVTW 273


>gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3G [Homo sapiens]
          Length = 384

 Score =  124 bits (311), Expect = 2e-29
 Identities = 57/58 (98%), Positives = 57/58 (98%)

Query: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV 58
          MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRP LDAKIFRGQV
Sbjct: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQV 58



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 16  TFSYNFYNRPILSRRNTVWLCYEVK 40
           TF++NF N P +  R+  +LCYEV+
Sbjct: 201 TFTFNFNNEPWVRGRHETYLCYEVE 225


>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3B [Homo sapiens]
          Length = 382

 Score = 68.9 bits (167), Expect = 8e-13
 Identities = 42/90 (46%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVP 59
          M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRGQV 
Sbjct: 1  MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 60

Query: 60 -RSFIRAPFQVLSSPFGQCAPPHGTAQVQW 88
           +    A    LS   G   P +   Q+ W
Sbjct: 61 FKPQYHAEMCFLSWFCGNQLPAYKCFQITW 90



 Score = 37.0 bits (84), Expect = 0.003
 Identities = 14/26 (53%), Positives = 20/26 (76%)

Query: 15  DTFSYNFYNRPILSRRNTVWLCYEVK 40
           DTF++NF N P++ RR   +LCYEV+
Sbjct: 196 DTFTFNFNNDPLVLRRRQTYLCYEVE 221


>gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3D [Homo sapiens]
          Length = 386

 Score = 65.5 bits (158), Expect = 9e-12
 Identities = 34/59 (57%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQV 58
          M P  RN +ERMYRDTF  NF N PIL  R+  WLCYEVK K G S    D  +FRG V
Sbjct: 1  MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPV 59



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 1   MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPRLDAKIFRGQV- 58
           +K   RN +E MY   F ++F N      RN  WLC+ ++ TK  S       +FR QV 
Sbjct: 197 LKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVD 256

Query: 59  PRSFIRAPFQVLSSPFGQCAPPHGTAQVQW 88
           P +   A    LS        P+   +V W
Sbjct: 257 PETHCHAERCFLSWFCDDILSPNTNYEVTW 286


>gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 3C [Homo sapiens]
          Length = 190

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 1  MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPRLDAKIFRGQV 58
          M P  RN ++ MY  TF + F N    + RN  WLC+ V+  K  S       +FR QV
Sbjct: 1  MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQV 59


>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
          polypeptide-like 2 [Homo sapiens]
          Length = 224

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 8  TVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKG 43
          T ER+  + F + F N    S RN  +LCY V+ +G
Sbjct: 43 TGERLPANFFKFQFRNVEYSSGRNKTFLCYVVEAQG 78


>gi|63055040 PPPDE peptidase domain containing 2 [Homo sapiens]
          Length = 168

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 57  QVPRSFIRAPFQVLSSPFGQCAPP-HGTAQVQWPPQLTAGREQGR 100
           ++P      P +VLS+PFGQ   P   + Q+Q P   + GR  G+
Sbjct: 123 KIPSYITDLPSEVLSTPFGQALRPLLDSIQIQPPGGSSVGRPNGQ 167


>gi|4758326 coagulation factor II (thrombin) receptor-like 2
          precursor [Homo sapiens]
          Length = 374

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 38 EVKTKGPSRPRLDAKIFRGQVPRSFIRAPFQVL 70
          E  T   ++P L  K FRG  P SF   PF  L
Sbjct: 24 ENDTNNLAKPTLPIKTFRGAPPNSFEEFPFSAL 56


>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
          [Homo sapiens]
          Length = 486

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 44 PSRPRLDA-KIFRGQVPRSFIRAPFQVLSSPFG 75
          P +P LDA K+F GQVPR++     + L   +G
Sbjct: 8  PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYG 40


>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
          [Homo sapiens]
          Length = 482

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 44 PSRPRLDA-KIFRGQVPRSFIRAPFQVLSSPFG 75
          P +P LDA K+F GQVPR++     + L   +G
Sbjct: 8  PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYG 40


>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
          [Homo sapiens]
          Length = 483

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 44 PSRPRLDA-KIFRGQVPRSFIRAPFQVLSSPFG 75
          P +P LDA K+F GQVPR++     + L   +G
Sbjct: 8  PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYG 40


>gi|38093637 Nance-Horan syndrome protein isoform 1 [Homo sapiens]
          Length = 1630

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 38  EVKTKGPSRPRLDAKIFRGQVPRSFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTAGRE 97
           EV+  GP  P        G  P      P   L +P  Q  PPHG A V    + TAG  
Sbjct: 48  EVEAPGPEEPARAVPAPSGLPP------PPPPLPAPADQTQPPHGEASVA-GEESTAGIP 100

Query: 98  QGRP 101
           +  P
Sbjct: 101 EAAP 104


>gi|31542327 solute carrier family 22, member 16 [Homo sapiens]
          Length = 577

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 7   NTVERMYRDTFSYNFYNRPILSRRNTVWLCY 37
           N+   + +   SY FYN  I  R  TVWL +
Sbjct: 336 NSPTEVQKHNLSYLFYNWSITKRTLTVWLIW 366


>gi|45545405 nuclear receptor subfamily 5, group A, member 2 isoform
           1 [Homo sapiens]
          Length = 541

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 59  PRSFIRAPFQVLSSPFGQCAPPHGTAQ 85
           P  + R+PF  ++SP     PPHG+ Q
Sbjct: 232 PTDYDRSPF--VTSPISMTMPPHGSLQ 256


>gi|4504343 nuclear receptor subfamily 5, group A, member 2 isoform
           2 [Homo sapiens]
          Length = 495

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 59  PRSFIRAPFQVLSSPFGQCAPPHGTAQ 85
           P  + R+PF  ++SP     PPHG+ Q
Sbjct: 186 PTDYDRSPF--VTSPISMTMPPHGSLQ 210


>gi|17136078 VGF nerve growth factor inducible precursor [Homo
           sapiens]
          Length = 615

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 38  EVKTKGPSRPRLDAKIFRGQVPRSFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTA 94
           EV+    S P+ + ++F+G  PR+      Q L  P    +PP  +   Q P +  A
Sbjct: 58  EVRGARNSEPQDEGELFQGVDPRALAAVLLQALDRP---ASPPAPSGSQQGPEEEAA 111


>gi|229577238 tetratricopeptide repeat domain 18 [Homo sapiens]
          Length = 1121

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 50 DAKIFRGQVPRSFIRAPFQ--VLSSPFGQCAPPHGTAQVQWPPQLTAGREQG 99
          D K F+G  P +FIRA F   VL         P G+A+  +        E G
Sbjct: 20 DLKGFKGDTPVTFIRAEFNQVVLGDSAKITVSPEGSAKYNFTSSFEFNPEGG 71


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,598,098
Number of Sequences: 37866
Number of extensions: 197021
Number of successful extensions: 477
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 26
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.