Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PPPDE2 Sequence: fasta or formatted (168aa) NCBI GI: 63055040
Description:

PPPDE peptidase domain containing 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4          4           1
 C cysteine            1.2          2           1
 D aspartate           3.6          6           1
 E glutamate           7.1         12           2
 F phenylalanine       5.4          9           3
 G glycine            10.7         18           2
 H histidine           1.8          3           1
 I isoleucine          5.4          9           1
 K lysine              3.0          5           1
 L leucine            11.9         20           2
 M methionine          1.2          2           1
 N asparagine          3.6          6           1
 P proline             8.9         15           2
 Q glutamine           3.6          6           1
 R arginine            3.6          6           2
 S serine             11.3         19           2
 T threonine           4.8          8           1
 V valine              6.5         11           2
 W tryptophan          0.6          1           1
 Y tyrosine            3.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PPPDE peptidase domain containing 2 
PPPDE1                0.101   PPPDE peptidase domain containing 1 
LOC100293658          0.063   PREDICTED: similar to CGI-146 protein 
LOC100291497          0.063   PREDICTED: hypothetical protein XP_002348023 
LOC100288211          0.063   PREDICTED: hypothetical protein XP_002343701 
APOBEC3F              0.013   apolipoprotein B mRNA editing enzyme, catalytic poly...
MAGEB2                0.009   melanoma antigen family B, 2 
MED26                 0.009   mediator complex subunit 26 
EXOC3L                0.009   exocyst complex component 3-like 
IL10RB                0.006   interleukin 10 receptor, beta precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press