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Search of human proteins with 54607091
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54607091 SUMO1/sentrin/SMT3 specific protease 2 [Homo
sapiens]
(589 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54607091 SUMO1/sentrin/SMT3 specific protease 2 [Homo sapiens] 1208 0.0
gi|7657550 sentrin/SUMO-specific protease 1 [Homo sapiens] 294 1e-79
gi|21361499 SUMO1/sentrin/SMT3 specific protease 3 [Homo sapiens] 147 2e-35
gi|159032029 SUMO1/sentrin specific peptidase 5 [Homo sapiens] 143 5e-34
gi|156105703 SUMO1/sentrin specific peptidase 6 isoform 2 [Homo ... 69 1e-11
gi|156105701 SUMO1/sentrin specific peptidase 6 isoform 1 [Homo ... 69 1e-11
gi|116174736 sentrin/SUMO-specific protease 7 isoform 2 [Homo sa... 63 7e-10
gi|116174746 sentrin/SUMO-specific protease 7 isoform 1 [Homo sa... 63 7e-10
gi|87196343 PDZ domain containing 2 [Homo sapiens] 33 0.73
gi|87299628 biorientation of chromosomes in cell division 1-like... 32 1.6
gi|100816392 far upstream element (FUSE) binding protein 3 [Homo... 32 2.1
gi|4502165 apolipoprotein F precursor [Homo sapiens] 32 2.1
gi|154091028 sorting nexin 29 [Homo sapiens] 32 2.1
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 31 2.8
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 31 2.8
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 31 2.8
gi|146262005 CTAGE family, member 6 [Homo sapiens] 31 2.8
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 31 3.6
gi|110349719 titin isoform N2-A [Homo sapiens] 30 6.2
gi|110349717 titin isoform novex-2 [Homo sapiens] 30 6.2
gi|110349713 titin isoform novex-1 [Homo sapiens] 30 6.2
gi|110349715 titin isoform N2-B [Homo sapiens] 30 6.2
gi|110347568 centrosomal protein 152kDa [Homo sapiens] 30 6.2
gi|193290160 CTAGE family, member 4 [Homo sapiens] 30 8.1
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo... 30 8.1
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo... 30 8.1
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 30 8.1
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 30 8.1
gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Hom... 30 8.1
gi|21389505 janus kinase and microtubule interacting protein 1 i... 30 8.1
>gi|54607091 SUMO1/sentrin/SMT3 specific protease 2 [Homo sapiens]
Length = 589
Score = 1208 bits (3125), Expect = 0.0
Identities = 589/589 (100%), Positives = 589/589 (100%)
Query: 1 MYRWLVRILGTIFRFCDRSVPPARALLKRRRSDSTLFSTVDTDEIPAKRPRLDCFIHQVK 60
MYRWLVRILGTIFRFCDRSVPPARALLKRRRSDSTLFSTVDTDEIPAKRPRLDCFIHQVK
Sbjct: 1 MYRWLVRILGTIFRFCDRSVPPARALLKRRRSDSTLFSTVDTDEIPAKRPRLDCFIHQVK 60
Query: 61 NSLYNAASLFGFPFQLTTKPMVTSACNGTRNVAPSGEVFSNSSSCELTGSGSWNNMLKLG 120
NSLYNAASLFGFPFQLTTKPMVTSACNGTRNVAPSGEVFSNSSSCELTGSGSWNNMLKLG
Sbjct: 61 NSLYNAASLFGFPFQLTTKPMVTSACNGTRNVAPSGEVFSNSSSCELTGSGSWNNMLKLG 120
Query: 121 NKSPNGISDYPKIRVTVTRDQPRRVLPSFGFTLNSEGCNRRPGGRRHSKGNPESSLMWKP 180
NKSPNGISDYPKIRVTVTRDQPRRVLPSFGFTLNSEGCNRRPGGRRHSKGNPESSLMWKP
Sbjct: 121 NKSPNGISDYPKIRVTVTRDQPRRVLPSFGFTLNSEGCNRRPGGRRHSKGNPESSLMWKP 180
Query: 181 QEQAVTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGHGNSVCPVTSNYH 240
QEQAVTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGHGNSVCPVTSNYH
Sbjct: 181 QEQAVTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGHGNSVCPVTSNYH 240
Query: 241 SSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVETRGPLCSLRSEKRCSKGKITDTE 300
SSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVETRGPLCSLRSEKRCSKGKITDTE
Sbjct: 241 SSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVETRGPLCSLRSEKRCSKGKITDTE 300
Query: 301 TMVGIRFENESRRGYQLEPDLSEEVSARLRLGSGSNGLLRRKVSIIETKEKNCSGKERDR 360
TMVGIRFENESRRGYQLEPDLSEEVSARLRLGSGSNGLLRRKVSIIETKEKNCSGKERDR
Sbjct: 301 TMVGIRFENESRRGYQLEPDLSEEVSARLRLGSGSNGLLRRKVSIIETKEKNCSGKERDR 360
Query: 361 RTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYM 420
RTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYM
Sbjct: 361 RTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYM 420
Query: 421 NLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWS 480
NLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWS
Sbjct: 421 NLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWS 480
Query: 481 LVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIP 540
LVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIP
Sbjct: 481 LVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIP 540
Query: 541 QQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL 589
QQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL
Sbjct: 541 QQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL 589
>gi|7657550 sentrin/SUMO-specific protease 1 [Homo sapiens]
Length = 643
Score = 294 bits (753), Expect = 1e-79
Identities = 144/298 (48%), Positives = 201/298 (67%), Gaps = 7/298 (2%)
Query: 292 SKGKITDTETMVGIRFENESRRGYQLEPDLSEEVSARLRLGSGSNGLLRRKVSIIETKEK 351
++ ++ E + + +++R + E + + V LR+ L +++ + +E
Sbjct: 353 ARERLRQIEEQKALALQLQNQRLQEREHSVHDSVELHLRVP------LEKEIPVTVVQET 406
Query: 352 NCSGKERDRRTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWL 411
G + D+ E+TE+MEKEI N +G QDE+LS AF+L ITR DIQTL + +WL
Sbjct: 407 QKKGHKLTDSEDEFPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWL 466
Query: 412 NDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILV 471
NDE+INFYMN+L+ER+K++G P++H F+TFF+ KLK+ GYQAVKRWTK V++F +I+LV
Sbjct: 467 NDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLV 526
Query: 472 PIHRKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTH 531
PIH VHW L V+D RKK + Y DSMG + C ILLQYL+ ES K+ + + W
Sbjct: 527 PIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQL 586
Query: 532 HSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL 589
S K +IPQQ+NGSDCGMF CKYAD I++D+PI FTQ MP FRK+MVWEILH++LL
Sbjct: 587 FS-KKSQIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL 643
Score = 31.2 bits (69), Expect = 2.8
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 195 KGLRRPHCTVEEGVQKEEREKYRKLLERLKESGHGNSVCPVTSNY--HSSQ--RSQMDTL 250
K RR T EE VQ+EERE YR+LL+ + +G ++ T+++ H S+ S +TL
Sbjct: 173 KTQRRHVSTAEETVQEEEREIYRQLLQMV--TGKQFTIAKPTTHFPLHLSRCLSSSKNTL 230
Query: 251 K 251
K
Sbjct: 231 K 231
>gi|21361499 SUMO1/sentrin/SMT3 specific protease 3 [Homo sapiens]
Length = 574
Score = 147 bits (372), Expect = 2e-35
Identities = 78/228 (34%), Positives = 132/228 (57%), Gaps = 19/228 (8%)
Query: 365 LLELTEDMEKEISNALGHGPQDEILSSAFKLRI-TRGDIQTLKNYHWLNDEVINFYMNLL 423
+L+L + ++ NA+ G A+K + T D+ TL +WLND+V+N Y +L+
Sbjct: 360 VLQLIQSYQRMPGNAMVRG-----FRVAYKRHVLTMDDLGTLYGQNWLNDQVMNMYGDLV 414
Query: 424 VERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVV 483
++ ++ +H F++FFY KL++ GY VKRWTK V++F +E++L+PIH +VHWSL+
Sbjct: 415 MDTVPEK----VHFFNSFFYDKLRTKGYDGVKRWTKNVDIFNKELLLIPIHLEVHWSLIS 470
Query: 484 IDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPH---EIP 540
+D+R++ + Y DS R + + +YLQ E+ K D H K + +
Sbjct: 471 VDVRRRTITYFDSQRTLNRRCPKHIAKYLQAEAVKKDRLDF------HQGWKGYFKMNVA 524
Query: 541 QQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQL 588
+Q N SDCG F +Y +++ +P +FTQ MP R+++ E+ H +L
Sbjct: 525 RQNNDSDCGAFVLQYCKHLALSQPFSFTQQDMPKLRRQIYKELCHCKL 572
>gi|159032029 SUMO1/sentrin specific peptidase 5 [Homo sapiens]
Length = 755
Score = 143 bits (360), Expect = 5e-34
Identities = 86/289 (29%), Positives = 151/289 (52%), Gaps = 12/289 (4%)
Query: 304 GIRFENE---SRRGYQLEPDLSEEVSARLRLGSGSNGLLRRKVSIIETKEKNCSGKERDR 360
G++ EN+ + + P E++S + L + ++++ S++ EK G+ +D
Sbjct: 475 GLKLENQVGGGKNSQKASPVDDEQLS--VCLSGFLDEVMKKYGSLVPLSEKEVLGRLKDV 532
Query: 361 RTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYM 420
+D + +EI+N + K + D+ TL +WLND+VIN Y
Sbjct: 533 FNEDFSNRKPFINREITNYRARHQKCNFRIFYNKHMLDMDDLATLDGQNWLNDQVINMYG 592
Query: 421 NLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWS 480
L+++ + +H F++FF+ +L + GY VKRWTK V+LF++ ++L+PIH +VHWS
Sbjct: 593 ELIMDAVPDK----VHFFNSFFHRQLVTKGYNGVKRWTKKVDLFKKSLLLIPIHLEVHWS 648
Query: 481 LVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPHEIP 540
L+ + L + + + DS G E + +YL E++ K + L W K IP
Sbjct: 649 LITVTLSNRIISFYDSQGIHFKFCVENIRKYLLTEAREKNRPEF-LQGWQTAVTKC--IP 705
Query: 541 QQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL 589
QQ N SDCG+F +Y ++ ++P F+Q MP RK++ E+ +L+
Sbjct: 706 QQKNDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRIYKELCECRLM 754
>gi|156105703 SUMO1/sentrin specific peptidase 6 isoform 2 [Homo
sapiens]
Length = 1105
Score = 68.9 bits (167), Expect = 1e-11
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 16/106 (15%)
Query: 395 LRITRGDIQTLKNYHWLNDEVINFYMNLLV-ERNKKQGYPALHVFSTFFYPKL------- 446
+ +T D+ L +LND +I+FY+ LV E+ KK+ +H+FS+FFY +L
Sbjct: 659 ISVTNEDLHCLNEGEFLNDVIIDFYLKYLVLEKLKKEDADRIHIFSSFFYKRLNQRERRN 718
Query: 447 --------KSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI 484
+ + VK WT+ V++FE++ I VP++ HW L V+
Sbjct: 719 HETTNLSIQQKRHGRVKTWTRHVDIFEKDFIFVPLNEAAHWFLAVV 764
Score = 42.7 bits (99), Expect = 0.001
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 479 WSLVVIDLRKKCLKYLDSM-GQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPH 537
W L ++ C+ +DS+ G + +IL +YL+ E + K+ S + + P
Sbjct: 954 WHLKPTICKQPCILLMDSLRGPSRSNVVKILREYLEVEWEVKKGSKRSFSKDVMKGSNP- 1012
Query: 538 EIPQQLNGSDCGMFTCKYADYISRDKPITF 567
++PQQ N SDCG++ +Y + + ++F
Sbjct: 1013 KVPQQNNFSDCGVYVLQYVESFFENPILSF 1042
>gi|156105701 SUMO1/sentrin specific peptidase 6 isoform 1 [Homo
sapiens]
Length = 1112
Score = 68.9 bits (167), Expect = 1e-11
Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 16/106 (15%)
Query: 395 LRITRGDIQTLKNYHWLNDEVINFYMNLLV-ERNKKQGYPALHVFSTFFYPKL------- 446
+ +T D+ L +LND +I+FY+ LV E+ KK+ +H+FS+FFY +L
Sbjct: 666 ISVTNEDLHCLNEGEFLNDVIIDFYLKYLVLEKLKKEDADRIHIFSSFFYKRLNQRERRN 725
Query: 447 --------KSGGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI 484
+ + VK WT+ V++FE++ I VP++ HW L V+
Sbjct: 726 HETTNLSIQQKRHGRVKTWTRHVDIFEKDFIFVPLNEAAHWFLAVV 771
Score = 42.7 bits (99), Expect = 0.001
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 479 WSLVVIDLRKKCLKYLDSM-GQKGHRICEILLQYLQDESKTKRNSDLNLLEWTHHSMKPH 537
W L ++ C+ +DS+ G + +IL +YL+ E + K+ S + + P
Sbjct: 961 WHLKPTICKQPCILLMDSLRGPSRSNVVKILREYLEVEWEVKKGSKRSFSKDVMKGSNP- 1019
Query: 538 EIPQQLNGSDCGMFTCKYADYISRDKPITF 567
++PQQ N SDCG++ +Y + + ++F
Sbjct: 1020 KVPQQNNFSDCGVYVLQYVESFFENPILSF 1049
>gi|116174736 sentrin/SUMO-specific protease 7 isoform 2 [Homo
sapiens]
Length = 985
Score = 63.2 bits (152), Expect = 7e-10
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 86/265 (32%)
Query: 395 LRITRGDIQTLKNYHWLNDEVINFYMN-LLVERNKKQGYPALHVFSTFFY---------- 443
L +T D++ L+ +LND +I+FY+ L++E+ + H+FS+FFY
Sbjct: 695 LGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNL 754
Query: 444 ----PKLKSGG--YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------------- 484
P L ++ V+ WT+ +N+F ++ I VP++ HW L VI
Sbjct: 755 TEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDF 814
Query: 485 ----------------------DLRKK---CLKYLDSMGQKGH---------RICEILLQ 510
DLR L DS + + R C ++L
Sbjct: 815 PQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILD 874
Query: 511 YLQDESKTKRNSDLNL-----LEW-----THHSMKP-------HEIPQQLNGSDCGMFTC 553
L ++ + +N+ NL +EW TH ++P+Q N SDCG++
Sbjct: 875 SL--KAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLL 932
Query: 554 KYADYISRDKPITFTQHQMPLFRKK 578
+Y + +D + F ++P+ +K
Sbjct: 933 QYVESFFKDPIVNF---ELPIHLEK 954
>gi|116174746 sentrin/SUMO-specific protease 7 isoform 1 [Homo
sapiens]
Length = 1050
Score = 63.2 bits (152), Expect = 7e-10
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 86/265 (32%)
Query: 395 LRITRGDIQTLKNYHWLNDEVINFYMN-LLVERNKKQGYPALHVFSTFFY---------- 443
L +T D++ L+ +LND +I+FY+ L++E+ + H+FS+FFY
Sbjct: 760 LGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNL 819
Query: 444 ----PKLKSGG--YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------------- 484
P L ++ V+ WT+ +N+F ++ I VP++ HW L VI
Sbjct: 820 TEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDF 879
Query: 485 ----------------------DLRKK---CLKYLDSMGQKGH---------RICEILLQ 510
DLR L DS + + R C ++L
Sbjct: 880 PQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILD 939
Query: 511 YLQDESKTKRNSDLNL-----LEW-----THHSMKP-------HEIPQQLNGSDCGMFTC 553
L ++ + +N+ NL +EW TH ++P+Q N SDCG++
Sbjct: 940 SL--KAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLL 997
Query: 554 KYADYISRDKPITFTQHQMPLFRKK 578
+Y + +D + F ++P+ +K
Sbjct: 998 QYVESFFKDPIVNF---ELPIHLEK 1019
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 33.1 bits (74), Expect = 0.73
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 28/222 (12%)
Query: 160 RRPGGRRHSKGNPESSLMWKPQEQAVTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKL 219
RR + HS N SS +P E E+ + KG R T + GV R
Sbjct: 177 RRFKHKAHSTYNGNSSNSSEPGETPTLELGDRTAKKGKR----TRKFGVIS------RPP 226
Query: 220 LERLKESGHGNSVCPVTSNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQFVP--------- 270
+ E G++ C V+S+ + + D G + +G + + V
Sbjct: 227 ANKAPEESKGSAGCEVSSDPSTELENGPDPELGNGHVFQLENGPDSLKEVAGPHLERSEV 286
Query: 271 ---KQYRLVETRGPLCSLRSEKRCSKGKITDTETMVGIRFENESRRGYQLEPDLSEEVSA 327
++R+ +T PL + ++R SKG TD ++ + E E R +++E L E
Sbjct: 287 DRGTEHRIPKTDAPLTTSNDKRRFSKGGKTDFQSSDCLARE-EVGRIWKMEL-LKESDGL 344
Query: 328 RLRLGSGSNGLLRRKVSIIETKEKNCSGKERDRRT---DDLL 366
+++ SG G R +I+ T+ K RD R D+LL
Sbjct: 345 GIQV-SGGRGSKRSPHAIVVTQVKEGGAAHRDGRLSLGDELL 385
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 32.0 bits (71), Expect = 1.6
Identities = 22/114 (19%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 165 RRHSKGNPESSLMWKPQEQAVTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLK 224
+ ++K + L+ K +Q +E ++ + KG ++P + +KE++EK K + K
Sbjct: 291 KNYTKEHNNLILLNKDVQQESSEQKNKSTDKGEKKPDSNEKGERKKEKKEKTEKKFDHSK 350
Query: 225 ESGHGNSVCPVTSNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVET 278
+S V + ++ ++++LK E+ ++ KT + + + L+++
Sbjct: 351 KSEDTQKV----KDEKQAKEKEVESLKLP--SEKNSNKAKTVEGTKEDFSLIDS 398
>gi|100816392 far upstream element (FUSE) binding protein 3 [Homo
sapiens]
Length = 572
Score = 31.6 bits (70), Expect = 2.1
Identities = 40/184 (21%), Positives = 65/184 (35%), Gaps = 22/184 (11%)
Query: 109 GSGSWNNMLKLGNKSPNGISDYPKIRVTVTRDQPRRVLPSFGFTLNSEGCNRRPGGRRHS 168
G G W+ +G +P G+ + I TV D+ V+ G + S N++ G
Sbjct: 342 GRGDWS----VG--APGGVQE---ITYTVPADKCGLVIGKGGENIKS--INQQSGAHVEL 390
Query: 169 KGNPESS---------LMWKPQEQAVTEMISEES--GKGLRRPHCTVEEGVQKEEREKYR 217
+ NP + + PQ+ V + +E G L P + + ++
Sbjct: 391 QRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKVGGTNLGAPGAFGQSPFSQPPAPPHQ 450
Query: 218 KLLERLKESGHGNSVCPVTSNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVE 277
N V N HS+ S T+GWG + TQ VP Q +
Sbjct: 451 NTFPPRSSGCFPNMAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQ 510
Query: 278 TRGP 281
+ P
Sbjct: 511 SSQP 514
>gi|4502165 apolipoprotein F precursor [Homo sapiens]
Length = 326
Score = 31.6 bits (70), Expect = 2.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 351 KNCSGKERDRRTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHW 410
+NC GK R+R D ++L D+ ++ G GP +S+A K + G Q ++ Y
Sbjct: 204 QNCLGKARERGRDGAIDLGYDLLMTMAGMSG-GPMGLAISAALKPALRSGVQQLIQYYQD 262
Query: 411 LNDEVIN 417
D I+
Sbjct: 263 QKDANIS 269
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 31.6 bits (70), Expect = 2.1
Identities = 70/317 (22%), Positives = 130/317 (41%), Gaps = 52/317 (16%)
Query: 145 VLPSFGFTLNSEGCNRRPGGRRHSKGNPESSLMWKPQEQAVTEMISEESGKGLRRPHCTV 204
VLP G + E + PG G+P SSL+ P M E LR+ TV
Sbjct: 46 VLPDPGLRYSVEASS--PG-----HGSPLSSLL--PSASVPESMTISE----LRQ--ATV 90
Query: 205 EEGVQKEEREKYRKLLERLKESGHGNSVCPVTSNYHSSQRSQMDTLKTKGWGEEQNHGVK 264
+K+E E+ + L L + +S ++ R ++DTLK K +E+ G+K
Sbjct: 91 AMMNRKDELEEENRSLRNLLDGEMEHS---------AALRQEVDTLKRKVAEQEERQGMK 141
Query: 265 TTQFVPKQYRL-VETRGPLCSLRSEKRCSKGKITDTETMVGIRFENESRRGYQLEPDLSE 323
+ L V+ + + +++ KR +G+ + + + + E Q +++E
Sbjct: 142 VQALARENEVLKVQLKKYVGAVQMLKR--EGQTAEVPNLWSV--DGEVTVAEQKPGEIAE 197
Query: 324 EVSARLRLGSGSNGLLRRKVSIIETKEKNCSGKERDRRTDDLLE-LTEDMEKEISNALGH 382
E+++ R+ + + E + ER R E L M +E+ + G
Sbjct: 198 ELASSYE---------RKLIEVAEMHGELIEFNERLHRALVAKEALVSQMRQELIDLRGP 248
Query: 383 GPQDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFF 442
P D +S + Q+L ++ N +IN ++ + R K A HV+
Sbjct: 249 VPGDLSQTS---------EDQSLSDFEISNRALINVWIPSVFLRGKAAN--AFHVYQV-- 295
Query: 443 YPKLKSGGYQAVKRWTK 459
Y ++K + +R+T+
Sbjct: 296 YIRIKDDEWNIYRRYTE 312
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 31.2 bits (69), Expect = 2.8
Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 23/203 (11%)
Query: 180 PQEQAVTEMISEESGKGLRRPHCTV---EEGVQKEEREKYRKLLERLKESGHGNSVCPVT 236
P ++ M + +S K + + E+ + E + K+ E +E S C
Sbjct: 213 PLIESTANMDNNQSQKTFKNKETLIIEPEKNASRIESLEQEKVDEE-EEGKKDESSCSSE 271
Query: 237 SNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVETRGPLCSLRSEKRCSKGKI 296
+ S+ +T KTK N +TQ P V P S G+
Sbjct: 272 EDEEDDSESEAETDKTKPLASVTNANTSSTQAAP-----VAVTTP--------TVSSGQA 318
Query: 297 TDTETMVGIRFENESRRGYQLEPDLSEEVSARLRLG---SGSNGLLRRKVSIIE-TKEKN 352
T T + +F + + E + +E A RLG +GS G L + E KEK+
Sbjct: 319 TPTSPIK--KFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKD 376
Query: 353 CSGKERDRRTDDLLELTEDMEKE 375
+G R + L ++ EKE
Sbjct: 377 TAGVTRSASSPRLSSSLDNKEKE 399
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 31.2 bits (69), Expect = 2.8
Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 23/203 (11%)
Query: 180 PQEQAVTEMISEESGKGLRRPHCTV---EEGVQKEEREKYRKLLERLKESGHGNSVCPVT 236
P ++ M + +S K + + E+ + E + K+ E +E S C
Sbjct: 300 PLIESTANMDNNQSQKTFKNKETLIIEPEKNASRIESLEQEKVDEE-EEGKKDESSCSSE 358
Query: 237 SNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVETRGPLCSLRSEKRCSKGKI 296
+ S+ +T KTK N +TQ P V P S G+
Sbjct: 359 EDEEDDSESEAETDKTKPLASVTNANTSSTQAAP-----VAVTTP--------TVSSGQA 405
Query: 297 TDTETMVGIRFENESRRGYQLEPDLSEEVSARLRLG---SGSNGLLRRKVSIIE-TKEKN 352
T T + +F + + E + +E A RLG +GS G L + E KEK+
Sbjct: 406 TPTSPIK--KFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKD 463
Query: 353 CSGKERDRRTDDLLELTEDMEKE 375
+G R + L ++ EKE
Sbjct: 464 TAGVTRSASSPRLSSSLDNKEKE 486
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 31.2 bits (69), Expect = 2.8
Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 23/203 (11%)
Query: 180 PQEQAVTEMISEESGKGLRRPHCTV---EEGVQKEEREKYRKLLERLKESGHGNSVCPVT 236
P ++ M + +S K + + E+ + E + K+ E +E S C
Sbjct: 300 PLIESTANMDNNQSQKTFKNKETLIIEPEKNASRIESLEQEKVDEE-EEGKKDESSCSSE 358
Query: 237 SNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVETRGPLCSLRSEKRCSKGKI 296
+ S+ +T KTK N +TQ P V P S G+
Sbjct: 359 EDEEDDSESEAETDKTKPLASVTNANTSSTQAAP-----VAVTTP--------TVSSGQA 405
Query: 297 TDTETMVGIRFENESRRGYQLEPDLSEEVSARLRLG---SGSNGLLRRKVSIIE-TKEKN 352
T T + +F + + E + +E A RLG +GS G L + E KEK+
Sbjct: 406 TPTSPIK--KFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKD 463
Query: 353 CSGKERDRRTDDLLELTEDMEKE 375
+G R + L ++ EKE
Sbjct: 464 TAGVTRSASSPRLSSSLDNKEKE 486
>gi|146262005 CTAGE family, member 6 [Homo sapiens]
Length = 777
Score = 31.2 bits (69), Expect = 2.8
Identities = 38/130 (29%), Positives = 51/130 (39%), Gaps = 36/130 (27%)
Query: 185 VTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGHGNSVCPVTSNYHSSQR 244
+TE E+ K R+ TVEE + EE EK K+ E+L S
Sbjct: 387 MTEFYQEDEMKLYRK--LTVEENYRIEEEEKLSKVEEKL-----------------SRAT 427
Query: 245 SQMDTLK--TKGWGEEQNHGVKTTQFVPKQYRLVETRG------------PLCSLRSEKR 290
Q++T + K EE +T F KQ E RG L LR E
Sbjct: 428 EQLETYRKLAKDLEEELE---RTVHFYQKQVISYEKRGHDNWLAARTAERNLSDLRKENA 484
Query: 291 CSKGKITDTE 300
+K K+T+TE
Sbjct: 485 HNKQKLTETE 494
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 165 RRHSKGNPESSLMWKPQEQAVTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLK 224
+RH + SL W P+E+ E+IS L C EG+ + E+ + E +
Sbjct: 142 KRHIRQKHPYSLHWSPREK---EVISNSWDAHLGLGACGEAEGLGVQGAEEEEEEEEEEE 198
Query: 225 ESGHGNSVCP 234
E G G CP
Sbjct: 199 EEGAGVPACP 208
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 30.0 bits (66), Expect = 6.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 185 VTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGH 228
+T+ + E+ K + + C VE V + + + K ++LKE+GH
Sbjct: 32720 ITQFLKAEASKEIAKLTCVVESSVLRAKEVTWYKDGKKLKENGH 32763
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 30.0 bits (66), Expect = 6.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 185 VTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGH 228
+T+ + E+ K + + C VE V + + + K ++LKE+GH
Sbjct: 26415 ITQFLKAEASKEIAKLTCVVESSVLRAKEVTWYKDGKKLKENGH 26458
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 30.0 bits (66), Expect = 6.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 185 VTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGH 228
+T+ + E+ K + + C VE V + + + K ++LKE+GH
Sbjct: 26348 ITQFLKAEASKEIAKLTCVVESSVLRAKEVTWYKDGKKLKENGH 26391
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 30.0 bits (66), Expect = 6.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 185 VTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGH 228
+T+ + E+ K + + C VE V + + + K ++LKE+GH
Sbjct: 26223 ITQFLKAEASKEIAKLTCVVESSVLRAKEVTWYKDGKKLKENGH 26266
>gi|110347568 centrosomal protein 152kDa [Homo sapiens]
Length = 1654
Score = 30.0 bits (66), Expect = 6.2
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 318 EPDLSEEVS---------ARLRLGSGSNGLLRRKVSIIETKEKNCSGKERDRRTDDLLEL 368
E D +EE+S A ++ GSN + R VS ++ K+C ++ +DL ++
Sbjct: 530 EEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDC-----HKKIEDLHQV 584
Query: 369 TED---MEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKN 407
+D +E E P++++ + + R DI LKN
Sbjct: 585 KKDEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKN 626
>gi|193290160 CTAGE family, member 4 [Homo sapiens]
Length = 777
Score = 29.6 bits (65), Expect = 8.1
Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 32/128 (25%)
Query: 185 VTEMISEESGKGLRRPHCTVEEGVQKEEREKYRKLLERLKESGHGNSVCPVTSNYHSSQR 244
+TE E K R+ TVEE + EE EK ++ E++ + G Y +
Sbjct: 387 MTEFYQENEMKLYRK--LTVEENYRIEEEEKLSRVEEKISRATEG------LETYRKLAK 438
Query: 245 SQMDTLKTKGWGEEQNHGVKTTQFVPKQYRLVETRGP------------LCSLRSEKRCS 292
+ L+ +T F KQ E RG L LR E +
Sbjct: 439 DLEEELE------------RTVHFYQKQVISYEKRGHDNWLAARTAERNLSDLRKENAHN 486
Query: 293 KGKITDTE 300
K K+T+TE
Sbjct: 487 KQKLTETE 494
>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
sapiens]
Length = 1236
Score = 29.6 bits (65), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 TLFSTVDTDEIPAKRPRLDCFIHQVK 60
TL ++ + PAKRPRL C +H V+
Sbjct: 759 TLLDSLRSTSSPAKRPRLKCLLHIVR 784
>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
sapiens]
Length = 1297
Score = 29.6 bits (65), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 TLFSTVDTDEIPAKRPRLDCFIHQVK 60
TL ++ + PAKRPRL C +H V+
Sbjct: 820 TLLDSLRSTSSPAKRPRLKCLLHIVR 845
>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 2 [Homo sapiens]
Length = 2472
Score = 29.6 bits (65), Expect = 8.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 210 KEEREKYRKLLERLKESGHGNSVCPVTSNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQF 268
KE E++R L + +E + + H QR D +TK W EE+N + T +
Sbjct: 1209 KELNERWRSLQQLAEERSQ------LLGSAHEVQRFHRDADETKEWIEEKNQALNTDNY 1261
>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 1 [Homo sapiens]
Length = 2477
Score = 29.6 bits (65), Expect = 8.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 210 KEEREKYRKLLERLKESGHGNSVCPVTSNYHSSQRSQMDTLKTKGWGEEQNHGVKTTQF 268
KE E++R L + +E + + H QR D +TK W EE+N + T +
Sbjct: 1209 KELNERWRSLQQLAEERSQ------LLGSAHEVQRFHRDADETKEWIEEKNQALNTDNY 1261
>gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Homo
sapiens]
Length = 541
Score = 29.6 bits (65), Expect = 8.1
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 206 EGVQKEEREKYRKLLERLKESGHGNSVC 233
+ +QK E+EK+ ++++++KE+G ++C
Sbjct: 275 KALQKYEKEKFEEMIQQIKETGANLAIC 302
>gi|21389505 janus kinase and microtubule interacting protein 1
isoform 2 [Homo sapiens]
Length = 626
Score = 29.6 bits (65), Expect = 8.1
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 34/187 (18%)
Query: 287 SEKRCSKGKITDTETMVGIRFENESRRG---YQLEPDLSEEVSARLR-----LGSGSNGL 338
S KR I D ++G++ ++ R +QL+ V +L L N L
Sbjct: 259 SPKRELPPGIGDMVELMGVQDQHMDERDVRRFQLKIAELNSVIRKLEDRNTLLADERNEL 318
Query: 339 LRR----KVSIIETKEKNCSGKERDRRTDDLLELTEDMEKEISNALGHGPQ-DEILSSAF 393
L+R +V + EKN K +++ +DLL+ + ME++I N + E LS+
Sbjct: 319 LKRSRETEVQLKPLVEKN---KRMNKKNEDLLQSIQRMEEKIKNLTRENVEMKEKLSAQA 375
Query: 394 KLR---------ITRGD-------IQTLKNYHWLNDEVINFYMNLLVERNKKQGY--PAL 435
L+ +TR + +Q L+ H ++D + L +R++ + P
Sbjct: 376 SLKRHTSLNDLSLTRDEQEIEFLRLQVLEQQHVIDDLSLERERLLRSKRHRGKSLKPPKK 435
Query: 436 HVFSTFF 442
HV TFF
Sbjct: 436 HVVETFF 442
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,660,364
Number of Sequences: 37866
Number of extensions: 1131147
Number of successful extensions: 3176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3109
Number of HSP's gapped (non-prelim): 71
length of query: 589
length of database: 18,247,518
effective HSP length: 108
effective length of query: 481
effective length of database: 14,157,990
effective search space: 6809993190
effective search space used: 6809993190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.