Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289692 Sequence: fasta or formatted (166aa) NCBI GI: 239751099
Description:

PREDICTED: hypothetical protein XP_002347699

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         14           2
 C cysteine            5.4          9           1
 D aspartate           0.0          0           0
 E glutamate           1.2          2           1
 F phenylalanine       0.6          1           1
 G glycine            10.8         18           2
 H histidine           3.0          5           1
 I isoleucine          1.8          3           1
 K lysine              3.0          5           1
 L leucine             4.2          7           1
 M methionine          1.2          2           2
 N asparagine          1.2          2           1
 P proline             7.2         12           2
 Q glutamine           2.4          4           1
 R arginine           16.3         27           4
 S serine             16.3         27           3
 T threonine          12.0         20           2
 V valine              1.2          2           1
 W tryptophan          3.6          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347699 
LOC100292227          1.000   PREDICTED: hypothetical protein 
LOC100287811          1.000   PREDICTED: hypothetical protein XP_002344136 
NFKBIL2               0.046   NF-kappa-B inhibitor-like protein 2 
LOC100133756          0.043   PREDICTED: hypothetical protein, partial 
LOC643446             0.043   PREDICTED: similar to ribonucleic acid binding prot...
LOC100293501          0.043   PREDICTED: hypothetical protein 
LOC643446             0.043   PREDICTED: similar to ribonucleic acid binding prot...
LOC100291178          0.043   PREDICTED: hypothetical protein XP_002347544 
LOC100289466          0.043   PREDICTED: hypothetical protein XP_002342181 
RNPS1                 0.043   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.043   RNA-binding protein S1, serine-rich domain 
LOC643446             0.040   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.040   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.040   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.040   PREDICTED: similar to ribonucleic acid binding prote...
LOC100290372          0.033   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.033   PREDICTED: hypothetical protein XP_002342652 
KIAA1853              0.030   KIAA1853 protein 
FLJ37078              0.027   hypothetical protein LOC222183 
MTX1                  0.024   metaxin 1 isoform 1 
MTX1                  0.024   metaxin 1 isoform 2 
LOC100291912          0.024   PREDICTED: hypothetical protein XP_002344618 
LOC100290635          0.024   PREDICTED: hypothetical protein XP_002347290 
LOC100287251          0.024   PREDICTED: hypothetical protein XP_002343154 
TNFAIP3               0.024   tumor necrosis factor, alpha-induced protein 3 
ZNF703                0.024   zinc finger protein 703 
SCML4                 0.024   sex comb on midleg-like 4 
LOC729815             0.024   PREDICTED: hypothetical protein 
HOXA11                0.021   homeobox A11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press