Guide to the Human Genome
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Name: OR5C1 Sequence: fasta or formatted (320aa) NCBI GI: 53828676
Description:

olfactory receptor, family 5, subfamily C, member 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         37           2
 C cysteine            3.4         11           2
 D aspartate           3.1         10           1
 E glutamate           2.2          7           1
 F phenylalanine       5.3         17           2
 G glycine             5.6         18           2
 H histidine           1.6          5           1
 I isoleucine          5.0         16           1
 K lysine              1.6          5           1
 L leucine            15.6         50           3
 M methionine          4.4         14           2
 N asparagine          3.1         10           1
 P proline             4.1         13           2
 Q glutamine           1.9          6           1
 R arginine            5.9         19           2
 S serine              8.4         27           3
 T threonine           6.9         22           2
 V valine              5.6         18           1
 W tryptophan          0.6          2           1
 Y tyrosine            4.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 5, subfamily C, member 1 ... 
OR5AR1                0.524   olfactory receptor, family 5, subfamily AR, member 1...
OR5W2                 0.524   olfactory receptor, family 5, subfamily W, member 2 ...
OR5AS1                0.493   olfactory receptor, family 5, subfamily AS, member 1...
OR8U9                 0.493   olfactory receptor, family 8, subfamily U, member 9 ...
OR5R1                 0.483   olfactory receptor, family 5, subfamily R, member 1 ...
OR5J2                 0.481   olfactory receptor, family 5, subfamily J, member 2 ...
OR5T2                 0.478   olfactory receptor, family 5, subfamily T, member 2 ...
OR5B21                0.476   olfactory receptor, family 5, subfamily B, member 21...
OR8U1                 0.474   olfactory receptor, family 8, subfamily U, member 1 ...
OR5T1                 0.474   olfactory receptor, family 5, subfamily T, member 1 ...
OR5B12                0.471   olfactory receptor, family 5, subfamily B, member 12...
OR5AP2                0.470   olfactory receptor, family 5, subfamily AP, member 2...
OR5T3                 0.468   olfactory receptor, family 5, subfamily T, member 3 ...
OR5A2                 0.468   olfactory receptor, family 5, subfamily A, member 2 ...
OR9I1                 0.463   olfactory receptor, family 9, subfamily I, member 1 ...
OR5A1                 0.461   olfactory receptor, family 5, subfamily A, member 1 ...
OR5I1                 0.461   olfactory receptor, family 5, subfamily I, member 1 [...
OR8D1                 0.461   olfactory receptor, family 8, subfamily D, member 1 ...
OR8U8                 0.461   olfactory receptor, family 8, subfamily U, member 8 ...
OR5F1                 0.456   olfactory receptor, family 5, subfamily F, member 1 ...
OR5B3                 0.448   olfactory receptor, family 5, subfamily B, member 3 ...
OR5AU1                0.445   olfactory receptor, family 5, subfamily AU, member 1...
OR5L2                 0.437   olfactory receptor, family 5, subfamily L, member 2 ...
OR5L1                 0.430   olfactory receptor, family 5, subfamily L, member 1 ...
OR9Q2                 0.428   olfactory receptor, family 9, subfamily Q, member 2 ...
OR5B2                 0.428   olfactory receptor, family 5, subfamily B, member 2 ...
OR2G3                 0.425   olfactory receptor, family 2, subfamily G, member 3 ...
OR8H2                 0.425   olfactory receptor, family 8, subfamily H, member 2 ...
OR8H3                 0.425   olfactory receptor, family 8, subfamily H, member 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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