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Search of human proteins with 52694752
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52694752 glycoprotein (transmembrane) nmb isoform a
precursor [Homo sapiens]
(572 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52694752 glycoprotein (transmembrane) nmb isoform a precursor... 1194 0.0
gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor ... 1161 0.0
gi|5902084 silver homolog [Homo sapiens] 166 4e-41
gi|197313781 transmembrane protein 130 isoform c [Homo sapiens] 46 8e-05
gi|197313779 transmembrane protein 130 isoform a [Homo sapiens] 46 8e-05
gi|23097274 transmembrane protein 130 isoform b [Homo sapiens] 46 8e-05
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 41 0.003
gi|156416026 zinc finger protein 219 [Homo sapiens] 40 0.008
gi|156415998 zinc finger protein 219 [Homo sapiens] 40 0.008
gi|156415996 zinc finger protein 219 [Homo sapiens] 40 0.008
gi|40548415 dishevelled associated activator of morphogenesis 2 ... 39 0.010
gi|47132519 Ras association and pleckstrin homology domains 1 is... 38 0.022
gi|150170670 piccolo isoform 2 [Homo sapiens] 38 0.022
gi|150378539 piccolo isoform 1 [Homo sapiens] 38 0.022
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 38 0.022
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 37 0.037
gi|52485606 formin-like 2 [Homo sapiens] 37 0.037
gi|148886716 downstream of Stk11 [Homo sapiens] 37 0.037
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 37 0.064
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 37 0.064
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 37 0.064
gi|11034811 catenin (cadherin-associated protein), delta 2 (neur... 37 0.064
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 37 0.064
gi|39812378 RAN binding protein 9 [Homo sapiens] 36 0.084
gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo ... 36 0.084
gi|239749816 PREDICTED: hypothetical protein [Homo sapiens] 36 0.084
gi|239744106 PREDICTED: hypothetical protein XP_002343034 [Homo ... 36 0.084
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 36 0.084
gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens] 36 0.084
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 36 0.11
>gi|52694752 glycoprotein (transmembrane) nmb isoform a precursor
[Homo sapiens]
Length = 572
Score = 1194 bits (3088), Expect = 0.0
Identities = 572/572 (100%), Positives = 572/572 (100%)
Query: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
Query: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC
Sbjct: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
Query: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
Query: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
Query: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
Query: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLE 360
HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLE
Sbjct: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLE 360
Query: 361 LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI 420
LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI
Sbjct: 361 LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI 420
Query: 421 PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS 480
PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS
Sbjct: 421 PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS 480
Query: 481 TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG 540
TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG
Sbjct: 481 TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG 540
Query: 541 LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS 572
LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS
Sbjct: 541 LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS 572
>gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor
[Homo sapiens]
Length = 560
Score = 1161 bits (3003), Expect = 0.0
Identities = 560/572 (97%), Positives = 560/572 (97%), Gaps = 12/572 (2%)
Query: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP
Sbjct: 1 MECLYYFLGFLLLAARLPLDAAKRFHDVLGNERPSAYMREHNQLNGWSSDENDWNEKLYP 60
Query: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC
Sbjct: 61 VWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGNIVYEKNC 120
Query: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL
Sbjct: 121 RNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNFIYVFHTL 180
Query: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV
Sbjct: 181 GQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHGRAYVPIAQVKDVYVVTDQIPVFV 240
Query: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN
Sbjct: 241 TMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVN 300
Query: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLE 360
HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSL GPAGDNPLE
Sbjct: 301 HTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSL------------GPAGDNPLE 348
Query: 361 LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI 420
LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI
Sbjct: 349 LSRIPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSI 408
Query: 421 PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS 480
PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS
Sbjct: 409 PTEVCTIISDPTCEITQNTVCSPVDVDEMCLLTVRRTFNGSGTYCVNLTLGDDTSLALTS 468
Query: 481 TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG 540
TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG
Sbjct: 469 TLISVPDRDPASPLRMANSALISVGCLAIFVTVISLLVYKKHKEYNPIENSPGNVVRSKG 528
Query: 541 LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS 572
LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS
Sbjct: 529 LSVFLNRAKAVFFPGNQEKDPLLKNQEFKGVS 560
>gi|5902084 silver homolog [Homo sapiens]
Length = 661
Score = 166 bits (421), Expect = 4e-41
Identities = 93/292 (31%), Positives = 149/292 (51%), Gaps = 21/292 (7%)
Query: 54 WNEKLYPVWKRGDMRWKNSWKGGRVQAVLTSDSPALVGSNITFAVNLIFPRCQKEDANGN 113
WN +LYP W + W+GG+V +++D P L+G+N +F++ L FP QK +G
Sbjct: 44 WNRQLYPEWTEAQRL--DCWRGGQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQ 101
Query: 114 IVYEKNCRNEAGLSADPYVYNWTAWSEDSDGENGTGQSHHNVFPDGKPFPHHPGWRRWNF 173
+++ N + W T + +FPDG P P ++ +F
Sbjct: 102 VIWVNNT----------IINGSQVWGGQPVYPQETDDAC--IFPDGGPCPSGSWSQKRSF 149
Query: 174 IYVFHTLGQYFQKLGRCSVRVSVNTANVTLGPQLMEVTVYRRHG-RAYVPIAQVKDVYVV 232
+YV+ T GQY+Q LG +S+ T LG MEVTVY R G R+YVP+A + +
Sbjct: 150 VYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSAFTI 209
Query: 233 TDQIPVFVTMFQKNDRNSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLF 292
TDQ+P V++ Q + ++ FL++ P+ F + +HDPS +L + ++Y W FGD++G
Sbjct: 210 TDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHDPSGYLAEADLSYTWDFGDSSGTL 269
Query: 293 VSTNHTVNHTYVLNGTFSLNLTVKAAAP------GPCPPPPPPPRPSKPTPS 338
+S V HTY+ G + + ++AA P P P RP+ P+
Sbjct: 270 ISRALVVTHTYLEPGPVTAQVVLQAAIPLTSCGSSPVPGTTDGHRPTAEAPN 321
Score = 97.8 bits (242), Expect = 2e-20
Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 15/198 (7%)
Query: 328 PPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLELSRIPDE---NCQINRYGHFQATITIV 384
P P P P S + +S + GP D L + + +C + RYG F T+ IV
Sbjct: 432 PIPEPEGPDASSIMSTESITGSL-GPLLDGTATLRLVKRQVPLDCVLYRYGSFSVTLDIV 490
Query: 385 EGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPTCEITQNTVCSPV 444
+GI + ++L VP E + V+CQG +P E C IS P C+ +C PV
Sbjct: 491 QGI------ESAEILQAVPSGEGDAFELTVSCQGGLPKEACMEISSPGCQPPAQRLCQPV 544
Query: 445 DVDEMCLLTVRRTF-NGSGTYCVNLTLGDDTSLALTSTLISVPDRDPASPLRMANSALIS 503
C L + + GSGTYC+N++L D SLA+ ST + +P ++ + LI
Sbjct: 545 LPSPACQLVLHQILKGGSGTYCLNVSLADTNSLAVVSTQLIMPGQEAG----LGQVPLIV 600
Query: 504 VGCLAIFVTVISLLVYKK 521
L + V++ L+Y++
Sbjct: 601 GILLVLMAVVLASLIYRR 618
>gi|197313781 transmembrane protein 130 isoform c [Homo sapiens]
Length = 321
Score = 46.2 bits (108), Expect = 8e-05
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 254 TFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNL 313
++L + L+HDPS+FL + Y W FGD T + V+ + V + Y + GTF++ L
Sbjct: 48 SYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQM-VTEDSVVYYNYSIIGTFTVKL 106
Query: 314 TVKA 317
V A
Sbjct: 107 KVVA 110
>gi|197313779 transmembrane protein 130 isoform a [Homo sapiens]
Length = 435
Score = 46.2 bits (108), Expect = 8e-05
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 254 TFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNL 313
++L + L+HDPS+FL + Y W FGD T + V+ + V + Y + GTF++ L
Sbjct: 150 SYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQM-VTEDSVVYYNYSIIGTFTVKL 208
Query: 314 TVKA 317
V A
Sbjct: 209 KVVA 212
>gi|23097274 transmembrane protein 130 isoform b [Homo sapiens]
Length = 423
Score = 46.2 bits (108), Expect = 8e-05
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 254 TFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNL 313
++L + L+HDPS+FL + Y W FGD T + V+ + V + Y + GTF++ L
Sbjct: 150 SYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQM-VTEDSVVYYNYSIIGTFTVKL 208
Query: 314 TVKA 317
V A
Sbjct: 209 KVVA 212
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 41.2 bits (95), Expect = 0.003
Identities = 21/43 (48%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 318 AAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLE 360
AAPGP PPPPPPP P P P + TPG G LE
Sbjct: 834 AAPGPLPPPPPPP-PPVPGPVTLPPPQLVPEGTPGGGGPPALE 875
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 325 PPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLELSRIP 365
PP PPP PS TP ++ P PA + P EL P
Sbjct: 796 PPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAP 836
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 39.7 bits (91), Expect = 0.008
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 299 VNHTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRP---SKPTPSLATTLKSYDSNTPGPAG 355
++H+ +G L +AAP P P P PPP+P S P P + + TP PA
Sbjct: 205 LHHSLTAHGAPERPLAATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEPEREATPTPAPAA 264
Query: 356 DNPLELSRIPDENCQI 371
P E P+ CQ+
Sbjct: 265 --PEEPPAPPEFRCQV 278
Score = 34.3 bits (77), Expect = 0.32
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 318 AAPGPCPPPPPPPR-------PSKPTPSLATTLKSYDSNTPGPAGDNP 358
A PGP P PPPP + +KP+P AT ++ S P +G P
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGP 603
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 39.7 bits (91), Expect = 0.008
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 299 VNHTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRP---SKPTPSLATTLKSYDSNTPGPAG 355
++H+ +G L +AAP P P P PPP+P S P P + + TP PA
Sbjct: 205 LHHSLTAHGAPERPLAATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEPEREATPTPAPAA 264
Query: 356 DNPLELSRIPDENCQI 371
P E P+ CQ+
Sbjct: 265 --PEEPPAPPEFRCQV 278
Score = 34.3 bits (77), Expect = 0.32
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 318 AAPGPCPPPPPPPR-------PSKPTPSLATTLKSYDSNTPGPAGDNP 358
A PGP P PPPP + +KP+P AT ++ S P +G P
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGP 603
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 39.7 bits (91), Expect = 0.008
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 299 VNHTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRP---SKPTPSLATTLKSYDSNTPGPAG 355
++H+ +G L +AAP P P P PPP+P S P P + + TP PA
Sbjct: 205 LHHSLTAHGAPERPLAATSAAPPPQPQPQPPPQPEPRSVPQPEPEPEPEREATPTPAPAA 264
Query: 356 DNPLELSRIPDENCQI 371
P E P+ CQ+
Sbjct: 265 --PEEPPAPPEFRCQV 278
Score = 34.3 bits (77), Expect = 0.32
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 318 AAPGPCPPPPPPPR-------PSKPTPSLATTLKSYDSNTPGPAGDNP 358
A PGP P PPPP + +KP+P AT ++ S P +G P
Sbjct: 556 AGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGP 603
>gi|40548415 dishevelled associated activator of morphogenesis 2
[Homo sapiens]
Length = 1067
Score = 39.3 bits (90), Expect = 0.010
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 308 TFSLNLTVKAAAPGP-------CPPPPPPPRP--SKPTPSLATTLKSYD---SNTPGPAG 355
T S ++T P P CPPPPPPP P PTP A P P+
Sbjct: 530 TLSSSMTTNDLPPPPPPLPFACCPPPPPPPLPPGGPPTPPGAPPCLGMGLPLPQDPYPSS 589
Query: 356 DNPLELSRIPDENCQINRYGHFQATITIVEGIL--EVNIIQMTDVL 399
D PL R+P + + + + V G + E++ +Q+ +L
Sbjct: 590 DVPLRKKRVPQPSHPLKSFNWVKLNEERVPGTVWNEIDDMQVFRIL 635
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 38.1 bits (87), Expect = 0.022
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 319 APGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNP 358
+P P PPPPPPP S PTP + + S T P G P
Sbjct: 933 SPVPAPPPPPPPTAS-PTPDKSGSPGKKTSKTSSPGGKKP 971
Score = 34.7 bits (78), Expect = 0.24
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 320 PGPCPPPPPPPRPSKPTPSLATTLKSYDSNTP 351
P P PPPPPPP P P P + + S S P
Sbjct: 631 PPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAP 662
Score = 34.3 bits (77), Expect = 0.32
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 320 PGPCPPPPPPPRPSKPTPSL 339
P P PPPPPPP P P P L
Sbjct: 630 PPPPPPPPPPPPPPPPPPPL 649
Score = 33.9 bits (76), Expect = 0.41
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 314 TVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLELSRI 364
T +P PPPPPPP P P P L S + + G A ++ S I
Sbjct: 620 TASQPSPPLPPPPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTI 670
Score = 30.8 bits (68), Expect = 3.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 273 FLNYSTINYKWSFGDNTG-LFVSTNHTVNHTYVLNGTFSLNLTVKAAAPGPCPPPPPPPR 331
F+ YSTI + ++G LF V + S+ + G PPPPPPP
Sbjct: 664 FVKYSTITRLQNASQHSGALFKPPTPPVMQSQ------SVKPQILVPPNGVVPPPPPPPP 717
Query: 332 PSKPTPSLA 340
P P ++A
Sbjct: 718 PPTPGSAMA 726
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 38.1 bits (87), Expect = 0.022
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTPSL 339
SL+++ + P P PPPPPPP P P P L
Sbjct: 2398 SLDISAQPPPPPPPPPPPPPPPPPPPPPPL 2427
Score = 37.4 bits (85), Expect = 0.037
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
S +L + A P P PPPPPPP P P P
Sbjct: 2396 SSSLDISAQPPPPPPPPPPPPPPPPPPP 2423
Score = 33.1 bits (74), Expect = 0.71
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 320 PGPCPPPPPPPRPSKPTP 337
P P PPPPPPP P P P
Sbjct: 2411 PPPPPPPPPPPPPPPPLP 2428
Score = 33.1 bits (74), Expect = 0.71
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 320 PGPCPPPPPPPRPSKPTPS 338
P P PPPPPPP P P P+
Sbjct: 2413 PPPPPPPPPPPPPPLPPPT 2431
Score = 32.7 bits (73), Expect = 0.92
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 320 PGPCPPPPPPPRPSKPTPSLATTLKSYDS---------NTPGPAGDNP 358
PGP PPP P P+KP P + K PGPA +P
Sbjct: 474 PGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSP 521
Score = 32.3 bits (72), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 309 FSLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
F + ++ +A P PPPPPPP P P P
Sbjct: 2393 FFRSSSLDISAQPPPPPPPPPPPPPPPPP 2421
Score = 32.0 bits (71), Expect = 1.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 320 PGPCPPPPPPPRPSKPTPSLATTL 343
P P PPPPPPP P P S T+
Sbjct: 2414 PPPPPPPPPPPPPLPPPTSPKPTI 2437
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 38.1 bits (87), Expect = 0.022
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTPSL 339
SL+++ + P P PPPPPPP P P P L
Sbjct: 2398 SLDISAQPPPPPPPPPPPPPPPPPPPPPPL 2427
Score = 37.4 bits (85), Expect = 0.037
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
S +L + A P P PPPPPPP P P P
Sbjct: 2396 SSSLDISAQPPPPPPPPPPPPPPPPPPP 2423
Score = 33.1 bits (74), Expect = 0.71
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 320 PGPCPPPPPPPRPSKPTP 337
P P PPPPPPP P P P
Sbjct: 2411 PPPPPPPPPPPPPPPPLP 2428
Score = 33.1 bits (74), Expect = 0.71
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 320 PGPCPPPPPPPRPSKPTPS 338
P P PPPPPPP P P P+
Sbjct: 2413 PPPPPPPPPPPPPPLPPPT 2431
Score = 32.7 bits (73), Expect = 0.92
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 320 PGPCPPPPPPPRPSKPTPSLATTLKSYDS---------NTPGPAGDNP 358
PGP PPP P P+KP P + K PGPA +P
Sbjct: 474 PGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSP 521
Score = 32.3 bits (72), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 309 FSLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
F + ++ +A P PPPPPPP P P P
Sbjct: 2393 FFRSSSLDISAQPPPPPPPPPPPPPPPPP 2421
Score = 32.0 bits (71), Expect = 1.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 320 PGPCPPPPPPPRPSKPTPSLATTL 343
P P PPPPPPP P P S T+
Sbjct: 2414 PPPPPPPPPPPPPLPPPTSPKPTI 2437
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 38.1 bits (87), Expect = 0.022
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 324 PPPPPP---PRPSKPTPSLATTLKS--YDSNTPGPAGDNPLELSRIP 365
PPPPPP P P P P + + +PGPA D P++LS+ P
Sbjct: 755 PPPPPPGHAPAPESPRPGSGSGSGPGLAPARSPGPAADGPIDLSKKP 801
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 37.4 bits (85), Expect = 0.037
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 313 LTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNP---------LELSR 363
L V AP P PPPPPPP P P P L + D P AG+ +L +
Sbjct: 366 LGVGPVAPPPPPPPPPPPGP-PPPPGLPS---DGDHQVPTTAGNKAALLDQIREGAQLKK 421
Query: 364 IPDENCQINRYGHFQATITIVEGILEVNIIQMTDVLMPVPWPESSLI 410
+ + ++ G I +GI ++ + P P P S ++
Sbjct: 422 VEQNSRPVSCSGRDALLDQIRQGIQLKSVADGQESTPPTPAPTSGIV 468
Score = 31.2 bits (69), Expect = 2.7
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 319 APGPCPPPPPPPRPSKPTP 337
AP PPPPPP RPS P
Sbjct: 317 APTAAPPPPPPSRPSVAVP 335
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 37.4 bits (85), Expect = 0.037
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 310 SLNLTVKAAAPGPCPPPPPPPRPSKPTP 337
S+ T+ AA+ GP PPPPPP PS TP
Sbjct: 513 SVGPTMGAASSGPLPPPPPPLPPSSDTP 540
Score = 35.8 bits (81), Expect = 0.11
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 320 PGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGD 356
P P PPPPPPP P P P L PGPA +
Sbjct: 555 PPPPPPPPPPPPPPPPPPPL-----------PGPAAE 580
Score = 33.9 bits (76), Expect = 0.41
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 320 PGPCPPPPPPPRPSKPTPSLAT 341
P P PPPPPPP P P P+ T
Sbjct: 560 PPPPPPPPPPPPPPLPGPAAET 581
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 304 VLNGTFSLNLTVKAAAPGPCPPPPPPPRP---------SKPTPSLATTLKS 345
V NG + + P P PPPPPPP P + P P LA L S
Sbjct: 543 VQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPLPGPAAETVPAPPLAPPLPS 593
>gi|148886716 downstream of Stk11 [Homo sapiens]
Length = 447
Score = 37.4 bits (85), Expect = 0.037
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 309 FSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAG 355
FS++ + GPCPP PPP RP + +P T S P G
Sbjct: 381 FSVDGGARGGPVGPCPPSPPPRRPRERSPGPVDTRSPASSGKAPPRG 427
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 36.6 bits (83), Expect = 0.064
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 317 AAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAG 355
++A P PPPPP PSKP S+A+ S SN GP G
Sbjct: 2 SSAAEPPPPPPPESAPSKPAASIASG-GSNSSNKGGPEG 39
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 36.6 bits (83), Expect = 0.064
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 232 VTDQIPVFVTMFQKNDR-NSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTG 290
+T Q+PV V + SD + P+ F P + + Y W FGD +
Sbjct: 1114 LTQQVPVSVRASLPSVAVGVSDGVLVAGRPVTFY-----PHPLPSPGGVLYTWDFGDGSP 1168
Query: 291 LFVSTNHTVNHTYVLNGTFSLNLTVKAAAPG 321
+ + NHTY GT+ + L V G
Sbjct: 1169 VLTQSQPAANHTYASRGTYHVRLEVNNTVSG 1199
Score = 29.6 bits (65), Expect = 7.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 269 DPSHFLNYSTINYKWSFGD-NTGLFVSTNHTVNHTYVLNGTFSLNLTVKA 317
+P+H+L + W+FGD ++ V TV H + +GTF L L + +
Sbjct: 1320 NPAHYL------FDWTFGDGSSNTTVRGCPTVTHNFTRSGTFPLALVLSS 1363
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 36.6 bits (83), Expect = 0.064
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 232 VTDQIPVFVTMFQKNDR-NSSDETFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTG 290
+T Q+PV V + SD + P+ F P + + Y W FGD +
Sbjct: 1114 LTQQVPVSVRASLPSVAVGVSDGVLVAGRPVTFY-----PHPLPSPGGVLYTWDFGDGSP 1168
Query: 291 LFVSTNHTVNHTYVLNGTFSLNLTVKAAAPG 321
+ + NHTY GT+ + L V G
Sbjct: 1169 VLTQSQPAANHTYASRGTYHVRLEVNNTVSG 1199
Score = 29.6 bits (65), Expect = 7.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 269 DPSHFLNYSTINYKWSFGD-NTGLFVSTNHTVNHTYVLNGTFSLNLTVKA 317
+P+H+L + W+FGD ++ V TV H + +GTF L L + +
Sbjct: 1320 NPAHYL------FDWTFGDGSSNTTVRGCPTVTHNFTRSGTFPLALVLSS 1363
>gi|11034811 catenin (cadherin-associated protein), delta 2 (neural
plakophilin-related arm-repeat protein) [Homo sapiens]
Length = 1225
Score = 36.6 bits (83), Expect = 0.064
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
Query: 308 TFSLNLTVKA---AAPGPCPPPPPPPR-------------PSKPTPSLATTLKSYDSNTP 351
+FS T +A A P P PPPPPPPR P P + A L S P
Sbjct: 201 SFSQGTTSRAGHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAALYYSSSTLP 260
Query: 352 G-PAGDNPL 359
P G +PL
Sbjct: 261 APPRGGSPL 269
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 36.6 bits (83), Expect = 0.064
Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 312 NLTVKAAAPGPC-PPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNPLELSRIP 365
NL V A P PC PPPPPPP P P P ++ S + P A PL L IP
Sbjct: 211 NLPV-VAPPVPCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLA---PLHLPPIP 261
Score = 35.0 bits (79), Expect = 0.19
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 305 LNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPSLATTLKSYDS-NTPGPAGDNPLELSR 363
L T + + A P P P PPPP P P P L L S TP + PL
Sbjct: 152 LGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLVSPPGPLTKGN 211
Query: 364 IP 365
+P
Sbjct: 212 LP 213
Score = 32.0 bits (71), Expect = 1.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 322 PCPPPPPPPRPSKPTP 337
P PPPPPPP P P P
Sbjct: 2 PVPPPPPPPLPPPPPP 17
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 36.2 bits (82), Expect = 0.084
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 317 AAAPGPCPPPPPPPRPSKPTPSLATTLKSYDSNTPGPAGDNP 358
A A P PPPPPPP S P+ + PGPAG P
Sbjct: 78 ATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAP 119
>gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo
sapiens]
Length = 152
Score = 36.2 bits (82), Expect = 0.084
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 320 PGPCPPPP--PPPRPSKPTPSLATTLKSYDSNTPGPAGDN 357
P P PPPP PPP P P+ A++L+ SN+ G +GD+
Sbjct: 69 PAPLPPPPSQPPPPPPLDPPASASSLR---SNSSGSSGDD 105
>gi|239749816 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 36.2 bits (82), Expect = 0.084
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 320 PGPCPPPP--PPPRPSKPTPSLATTLKSYDSNTPGPAGDN 357
P P PPPP PPP P P+ A++L+ SN+ G +GD+
Sbjct: 69 PAPLPPPPSQPPPPPPLDPPASASSLR---SNSSGSSGDD 105
>gi|239744106 PREDICTED: hypothetical protein XP_002343034 [Homo
sapiens]
Length = 152
Score = 36.2 bits (82), Expect = 0.084
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 320 PGPCPPPP--PPPRPSKPTPSLATTLKSYDSNTPGPAGDN 357
P P PPPP PPP P P+ A++L+ SN+ G +GD+
Sbjct: 69 PAPLPPPPSQPPPPPPLDPPASASSLR---SNSSGSSGDD 105
>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
Length = 1812
Score = 36.2 bits (82), Expect = 0.084
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 285 FGDNTGLFVSTNHTVNHT-YVLNGTF---------SLNLTVKAAAPGPCPPPPPPPRPSK 334
+ +NT + N VN VL G + S++ + P PPPPPPP P +
Sbjct: 92 YDENTSIIFRPNSKVNTDGLVLRGWYNCLTLAIYGSVDRVISHDRDSP-PPPPPPPPPPQ 150
Query: 335 PTPSLATTLKSYDSNTPGPAGDNP 358
P PSL K D +P
Sbjct: 151 PQPSLKRNPKHADGEKEDQFNGSP 174
>gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens]
Length = 1147
Score = 36.2 bits (82), Expect = 0.084
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 285 FGDNTGLFVSTNHTVNHT-YVLNGTF---------SLNLTVKAAAPGPCPPPPPPPRPSK 334
+ +NT + N VN VL G + S++ + P PPPPPPP P +
Sbjct: 92 YDENTSIIFRPNSKVNTDGLVLRGWYNCLTLAIYGSVDRVISHDRDSP-PPPPPPPPPPQ 150
Query: 335 PTPSLATTLKSYDSNTPGPAGDNP 358
P PSL K D +P
Sbjct: 151 PQPSLKRNPKHADGEKEDQFNGSP 174
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 35.8 bits (81), Expect = 0.11
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 15/58 (25%)
Query: 324 PPPPPPPRPSKPTP------------SLATTLKSYD-SNTPGPAGD--NPLELSRIPD 366
PPPPP P+P P P SL+++ SYD S+ P GD +P+ L R P+
Sbjct: 353 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPN 410
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,029,285
Number of Sequences: 37866
Number of extensions: 1434269
Number of successful extensions: 21152
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 14558
Number of HSP's gapped (non-prelim): 4329
length of query: 572
length of database: 18,247,518
effective HSP length: 108
effective length of query: 464
effective length of database: 14,157,990
effective search space: 6569307360
effective search space used: 6569307360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.