Guide to the Human Genome
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Name: LOC100289620 Sequence: fasta or formatted (109aa) NCBI GI: 239741104
Description:

PREDICTED: hypothetical protein XP_002342091

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         10           1
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate          12.8         14           2
 F phenylalanine       0.0          0           0
 G glycine            14.7         16           4
 H histidine           0.9          1           1
 I isoleucine          1.8          2           1
 K lysine             11.0         12           1
 L leucine             3.7          4           1
 M methionine          2.8          3           1
 N asparagine          1.8          2           1
 P proline             4.6          5           1
 Q glutamine           3.7          4           1
 R arginine           25.7         28           3
 S serine              1.8          2           1
 T threonine           3.7          4           1
 V valine              1.8          2           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342091 
LOC100293859          1.000   PREDICTED: hypothetical protein 
LOC100290583          1.000   PREDICTED: hypothetical protein XP_002346418 
LOC100292370          0.104   PREDICTED: hypothetical protein 
LOC100133599          0.104   PREDICTED: hypothetical protein 
LOC100286959          0.093   PREDICTED: hypothetical protein XP_002343921 
LOC100133599          0.078   PREDICTED: hypothetical protein 
LOC100131202          0.078   PREDICTED: hypothetical protein 
LOC100292035          0.073   PREDICTED: hypothetical protein XP_002345623 
CACNA1A               0.073   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.073   calcium channel, alpha 1A subunit isoform 3 
LOC100292262          0.073   PREDICTED: hypothetical protein 
LOC100287499          0.073   PREDICTED: hypothetical protein 
LOC100287499          0.073   PREDICTED: hypothetical protein XP_002343643 
CHD6                  0.073   chromodomain helicase DNA binding protein 6 
LOC100292062          0.067   PREDICTED: hypothetical protein XP_002346314 
SFRS11                0.067   splicing factor, arginine/serine-rich 11 
SFRS12                0.067   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.067   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100130174          0.062   PREDICTED: hypothetical protein 
LOC100290552          0.062   PREDICTED: hypothetical protein XP_002347697 
LOC100130174          0.062   PREDICTED: hypothetical protein 
LOC100130174          0.062   PREDICTED: hypothetical protein 
CROP                  0.062   cisplatin resistance-associated overexpressed protei...
CROP                  0.062   cisplatin resistance-associated overexpressed protei...
LOC100294088          0.062   PREDICTED: hypothetical protein, partial 
RBM25                 0.062   RNA binding motif protein 25 
TCHH                  0.057   trichohyalin 
PRPF38B               0.057   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
DDX46                 0.057   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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