Guide to the Human Genome
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Name: LOC440104 Sequence: fasta or formatted (105aa) NCBI GI: 239750337
Description:

PREDICTED: similar to RIKEN cDNA 1110012D08

Not currently referenced in the text

Other entries for this name:
alt mRNA {105aa} PREDICTED: hypothetical protein LOC440104
alt mRNA {105aa} PREDICTED: hypothetical protein LOC440104 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         11           1
 C cysteine            2.9          3           1
 D aspartate           1.0          1           1
 E glutamate           1.9          2           1
 F phenylalanine       1.9          2           1
 G glycine            13.3         14           2
 H histidine           1.0          1           1
 I isoleucine          1.0          1           1
 K lysine              0.0          0           0
 L leucine            28.6         30           3
 M methionine          1.0          1           1
 N asparagine          0.0          0           0
 P proline             7.6          8           2
 Q glutamine           2.9          3           1
 R arginine            2.9          3           1
 S serine              4.8          5           1
 T threonine           6.7          7           2
 V valine              7.6          8           1
 W tryptophan          2.9          3           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to RIKEN cDNA 1110012D08 
LOC440104             1.000   PREDICTED: hypothetical protein LOC440104 isoform 1...
LOC440104             1.000   PREDICTED: hypothetical protein LOC440104 
TMEM198               0.455   transmembrane protein 198 
MFSD3                 0.027   major facilitator superfamily domain containing 3 [H...
MFSD10                0.027   major facilitator superfamily domain containing 10 ...
MFSD10                0.027   major facilitator superfamily domain containing 10 ...
KRTCAP3               0.027   keratinocyte associated protein 3 
FOXB1                 0.016   forkhead box B1 
OR51G2                0.016   olfactory receptor, family 51, subfamily G, member 2...
BAT2                  0.016   HLA-B associated transcript-2 
ADRA2C                0.011   alpha-2C-adrenergic receptor 
ROBO3                 0.011   roundabout, axon guidance receptor, homolog 3 
CIC                   0.011   capicua homolog 
FAM189B               0.011   hypothetical protein LOC10712 isoform a 
CD7                   0.011   CD7 antigen precursor 
WNT3                  0.011   wingless-type MMTV integration site family, member 3...
EGFLAM                0.011   EGF-like, fibronectin type III and laminin G domains...
TYRO3                 0.005   TYRO3 protein tyrosine kinase 
GPR25                 0.005   G protein-coupled receptor 25 
LOC100294460          0.005   PREDICTED: similar to ATPase, Ca++ transporting, fa...
FFAR2                 0.005   free fatty acid receptor 2 
MDN1                  0.005   MDN1, midasin homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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