Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 51972260
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51972260 microtubule-associated protein 1 light chain 3
gamma [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51972260 microtubule-associated protein 1 light chain 3 gamma... 295 1e-80
gi|14210522 microtubule-associated protein 1 light chain 3 alpha... 142 8e-35
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ... 135 9e-33
gi|148277548 microtubule-associated protein 1 light chain 3 beta... 132 1e-31
gi|31563518 microtubule-associated protein 1 light chain 3 alpha... 124 3e-29
gi|169183885 PREDICTED: similar to microtubule-associated protei... 115 1e-26
gi|169179756 PREDICTED: similar to microtubule-associated protei... 114 3e-26
gi|169180155 PREDICTED: similar to microtubule-associated protei... 114 3e-26
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi... 95 2e-20
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap... 92 1e-19
gi|239755918 PREDICTED: similar to microtubule-associated protei... 91 5e-19
gi|239750436 PREDICTED: similar to microtubule-associated protei... 91 5e-19
gi|239744738 PREDICTED: similar to microtubule-associated protei... 91 5e-19
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] 90 6e-19
gi|153792633 hypothetical protein LOC26049 [Homo sapiens] 32 0.15
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 30 0.95
gi|4505213 matrix metalloproteinase 19 isoform rasi-1 preproprot... 28 3.6
gi|110349719 titin isoform N2-A [Homo sapiens] 27 8.0
>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
[Homo sapiens]
Length = 147
Score = 295 bits (754), Expect = 1e-80
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV 60
MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
Sbjct: 1 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV 60
Query: 61 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA 120
PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
Sbjct: 61 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA 120
Query: 121 SQETFGCLESAAPRDGSSLEDRPCNPL 147
SQETFGCLESAAPRDGSSLEDRPCNPL
Sbjct: 121 SQETFGCLESAAPRDGSSLEDRPCNPL 147
>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
isoform a [Homo sapiens]
Length = 121
Score = 142 bits (359), Expect = 8e-35
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 7 IPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTM 66
+PS RPFKQR+S A R +EV IR + P+KIPV++ERY E LP LDKTKFLVP + M
Sbjct: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 67 TQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
++ + IIR R+ L T+AF+LLVN S+VS+S +A+IY KDEDGF+YM YASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
[Homo sapiens]
Length = 125
Score = 135 bits (341), Expect = 9e-33
Identities = 66/120 (55%), Positives = 87/120 (72%)
Query: 7 IPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTM 66
+PS + FKQR++ R E+V IR + P KIPV++ERY E LP LDKTKFLVP + M
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 67 TQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
++ + IIR R+ L A +AF+LLVN S+VS+S ++E+Y KDEDGF+YM YASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
[Homo sapiens]
Length = 125
Score = 132 bits (332), Expect = 1e-31
Identities = 65/120 (54%), Positives = 86/120 (71%)
Query: 7 IPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTM 66
+PS + FKQR++ R E+V IR + P KIPV++ERY E LP LDKTKFLVP + M
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 67 TQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
++ + IIR R+ L A +AF+LLVN S+VS+S ++E+Y KDEDGF+YM ASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
isoform b [Homo sapiens]
Length = 125
Score = 124 bits (311), Expect = 3e-29
Identities = 62/107 (57%), Positives = 79/107 (73%)
Query: 20 AIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVL 79
A R +EV IR + P+KIPV++ERY E LP LDKTKFLVP + M++ + IIR R+ L
Sbjct: 18 ADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQL 77
Query: 80 RATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
T+AF+LLVN S+VS+S +A+IY KDEDGF+YM YASQETFG
Sbjct: 78 NPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124
>gi|169183885 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 157
Score = 115 bits (289), Expect = 1e-26
Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 3/125 (2%)
Query: 4 PQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVP-- 61
P+ P+ + FKQR++ R + V I+ + P K PV+ ERY E LP LDKTKFLVP
Sbjct: 29 PRTRPAEKTFKQRRTFQQRVD-VRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDV 87
Query: 62 QELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYAS 121
+++ M++ + IIR R+ L A +AF L+VN S+VS+S ++E+Y KDEDGF+YM YAS
Sbjct: 88 RDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYAS 147
Query: 122 QETFG 126
QET+G
Sbjct: 148 QETYG 152
>gi|169179756 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 114 bits (285), Expect = 3e-26
Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 3/121 (2%)
Query: 8 PSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVP--QELT 65
P+ + FKQR++ R + V I+ + P K PV+ ERY E LP LDKTKFLVP +++
Sbjct: 253 PAEKTFKQRRTFQQRVD-VRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
Query: 66 MTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF 125
M++ + IIR R+ L A +AF L+VN S+VS+S ++E+Y KDEDGF+YM YASQET+
Sbjct: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
Query: 126 G 126
G
Sbjct: 372 G 372
>gi|169180155 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 114 bits (285), Expect = 3e-26
Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 3/121 (2%)
Query: 8 PSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVP--QELT 65
P+ + FKQR++ R + V I+ + P K PV+ ERY E LP LDKTKFLVP +++
Sbjct: 253 PAEKTFKQRRTFQQRVD-VRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
Query: 66 MTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF 125
M++ + IIR R+ L A +AF L+VN S+VS+S ++E+Y KDEDGF+YM YASQET+
Sbjct: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
Query: 126 G 126
G
Sbjct: 372 G 372
>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
sapiens]
Length = 117
Score = 95.1 bits (235), Expect = 2e-20
Identities = 49/114 (42%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
Query: 13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 72
FK+ SL R E A IRAK+P+++PV+VE+ + +DK K+LVP ++T+ QF+ I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVD-IDKRKYLVPSDITVAQFMWI 63
Query: 73 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
IR R+ L + +A +L V+ K++ S TM ++Y KDEDGF+Y+ Y+ + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
sapiens]
Length = 117
Score = 92.4 bits (228), Expect = 1e-19
Identities = 45/114 (39%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 72
+K+ R++E IR K+P+++PV+VE+ P+ +P LDK K+LVP +LT+ QF +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLVPSDLTVGQFYFL 63
Query: 73 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
IR R+ LR +A + VNN ++ SATM ++Y D +ED F+Y+ Y+ + +G
Sbjct: 64 IRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 90.5 bits (223), Expect = 5e-19
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 42 ERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATM 101
+RY E LP LDKTKFLVP + M++ II+ + L A +AF+LLVN S VS+S
Sbjct: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
Query: 102 AEIYRDYKDEDGFVYMTYASQETFG 126
+E+Y KDEDGF+Y YASQE FG
Sbjct: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 90.5 bits (223), Expect = 5e-19
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 42 ERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATM 101
+RY E LP LDKTKFLVP + M++ II+ + L A +AF+LLVN S VS+S
Sbjct: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
Query: 102 AEIYRDYKDEDGFVYMTYASQETFG 126
+E+Y KDEDGF+Y YASQE FG
Sbjct: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
>gi|239744738 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 105
Score = 90.5 bits (223), Expect = 5e-19
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 42 ERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATM 101
+RY E LP LDKTKFLVP + M++ II+ + L A +AF+LLVN S VS+S
Sbjct: 14 KRYQGEKELPVLDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT 73
Query: 102 AEIYRDYKDEDGFVYMTYASQETFG 126
+E+Y KDEDGF+Y YASQE FG
Sbjct: 74 SEVYEGEKDEDGFLYTVYASQEMFG 98
>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
Length = 117
Score = 90.1 bits (222), Expect = 6e-19
Identities = 44/114 (38%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 72
+K+ R+ E IR K+P+++PV+VE+ P+ + LDK K+LVP +LT+ QF +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKAR-IGDLDKKKYLVPSDLTVGQFYFL 63
Query: 73 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
IR R+ LRA +A + VNN + SATM ++Y+++ +ED F+Y+ Y+ + +G
Sbjct: 64 IRKRIHLRAEDALFFFVNN-VIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>gi|153792633 hypothetical protein LOC26049 [Homo sapiens]
Length = 670
Score = 32.3 bits (72), Expect = 0.15
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 35 NKIPVVVERY-PRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKS 93
N +P+VVE P E P DKT + E+ M + S + M E LL K+
Sbjct: 469 NLVPLVVESSKPPEVDAP--DKTPRIPDSEMLMDEGTSDEKGHM----EEKLSLLPRKKA 522
Query: 94 LVSMSATMAEIYRDYKDEDGFVYMTYASQETFGCLESAAPRDGSSLEDR 142
+ S +A + + + + GF A E+ +P SSLED+
Sbjct: 523 HLGSSDNVATMSNEERSDGGFPNSVIAEFSEEPVSENLSPNTTSSLEDQ 571
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 29.6 bits (65), Expect = 0.95
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 2 PPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPL 53
PPP++ PS + KS+ EE+A IR + K+ ++ T P +
Sbjct: 695 PPPKRAPSTTLTLRSKSMTAELEELASIRRRKGEKLDEMLAAAAEPTLRPDI 746
>gi|4505213 matrix metalloproteinase 19 isoform rasi-1 preproprotein
[Homo sapiens]
Length = 508
Score = 27.7 bits (60), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 16 RKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLP 51
R + ++VAGI+A + K PV+ + ET LP
Sbjct: 238 RPHFKLHPDDVAGIQALYGKKSPVIRDEEEEETELP 273
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 26.6 bits (57), Expect = 8.0
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 3 PPQKIPSV-RPFKQRKSLAIRQEEVAGIR-AKFPNKIPVVVERYPRETFLPPLDKTKFLV 60
PP K+P V + ++++ + ++EEV + + P + P+ E P E P +++ + +
Sbjct: 10208 PPAKVPEVPKKVEEKRIILPKEEEVLPVEVTEEPEEEPISEEEIPEEP--PSIEEVEEVA 10265
Query: 61 P 61
P
Sbjct: 10266 P 10266
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,499,962
Number of Sequences: 37866
Number of extensions: 194214
Number of successful extensions: 487
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 19
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.