Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MMP19 Sequence: fasta or formatted (508aa) NCBI GI: 4505213
Description:

matrix metalloproteinase 19 isoform rasi-1 preproprotein

Referenced in:

Metalloproteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         35           2
 C cysteine            1.0          5           1
 D aspartate           5.1         26           2
 E glutamate           5.5         28           5
 F phenylalanine       4.9         25           2
 G glycine             8.1         41           2
 H histidine           2.6         13           1
 I isoleucine          2.8         14           2
 K lysine              4.5         23           2
 L leucine             9.8         50           3
 M methionine          2.0         10           2
 N asparagine          3.5         18           2
 P proline             8.3         42           2
 Q glutamine           4.3         22           2
 R arginine            6.1         31           1
 S serine              6.3         32           2
 T threonine           6.1         31           2
 V valine              5.3         27           1
 W tryptophan          2.8         14           1
 Y tyrosine            4.1         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   matrix metalloproteinase 19 isoform rasi-1 preproprot... 
LOC100289688          0.321   PREDICTED: hypothetical protein XP_002347374 
MMP24                 0.232   matrix metalloproteinase 24 preproprotein 
MMP14                 0.221   matrix metalloproteinase 14 preproprotein 
MMP28                 0.221   matrix metalloproteinase 28 isoform 1 preproprotein ...
MMP16                 0.218   matrix metalloproteinase 16 isoform 1 preproprotein ...
MMP15                 0.216   matrix metalloproteinase 15 preproprotein 
MMP17                 0.210   matrix metalloproteinase 17 preproprotein 
MMP25                 0.207   matrix metalloproteinase 25 preproprotein 
MMP11                 0.198   matrix metalloproteinase 11 preproprotein 
MMP10                 0.197   matrix metalloproteinase 10 preproprotein 
MMP3                  0.188   matrix metalloproteinase 3 preproprotein 
MMP13                 0.183   matrix metalloproteinase 13 preproprotein 
MMP1                  0.177   matrix metalloproteinase 1 isoform 1 preproprotein [H...
MMP12                 0.174   matrix metalloproteinase 12 preproprotein 
MMP1                  0.172   matrix metalloproteinase 1 isoform 2 
MMP27                 0.171   matrix metalloproteinase 27 
MMP20                 0.161   matrix metalloproteinase 20 preproprotein 
MMP8                  0.151   matrix metalloproteinase 8 preproprotein 
MMP16                 0.133   matrix metalloproteinase 16 isoform 2 preproprotein...
MMP21                 0.128   matrix metalloproteinase 21 preproprotein 
MMP2                  0.121   matrix metalloproteinase 2 isoform b 
MMP2                  0.121   matrix metalloproteinase 2 isoform a preproprotein [...
MMP7                  0.117   matrix metalloproteinase 7 preproprotein 
MMP26                 0.105   matrix metalloproteinase 26 preproprotein 
MMP9                  0.083   matrix metalloproteinase 9 preproprotein 
MMP23B                0.077   matrix metalloproteinase 23B precursor 
HPX                   0.042   hemopexin precursor 
VTN                   0.036   vitronectin precursor 
MMP28                 0.025   matrix metalloproteinase 28 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press