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Search of human proteins with 51972226
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51972226 hypothetical protein LOC402573 [Homo sapiens]
(206 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51972226 hypothetical protein LOC402573 [Homo sapiens] 417 e-117
gi|73427803 lethal giant larvae homolog 2 isoform c [Homo sapiens] 32 0.50
gi|62739161 lethal giant larvae homolog 2 isoform a [Homo sapiens] 32 0.50
gi|222537714 taxilin beta [Homo sapiens] 30 1.4
gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo ... 30 1.9
gi|110349719 titin isoform N2-A [Homo sapiens] 29 2.5
gi|110349717 titin isoform novex-2 [Homo sapiens] 29 2.5
gi|110349713 titin isoform novex-1 [Homo sapiens] 29 2.5
gi|110349715 titin isoform N2-B [Homo sapiens] 29 2.5
gi|5729790 CCCTC-binding factor [Homo sapiens] 29 2.5
gi|134152667 ICBP90 binding protein 1 [Homo sapiens] 29 3.2
gi|57222338 microfibrillar-associated protein 3-like isoform 2 [... 29 3.2
gi|153792329 microfibrillar-associated protein 3-like isoform 1 ... 29 3.2
gi|239753941 PREDICTED: hypothetical protein [Homo sapiens] 28 4.2
gi|29171755 PTPRF interacting protein alpha 2 [Homo sapiens] 28 4.2
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 28 5.5
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 28 5.5
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 28 5.5
gi|55769554 protein tyrosine phosphatase, receptor type, f polyp... 28 5.5
gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens] 28 7.2
gi|8923040 CDKN2A interacting protein [Homo sapiens] 28 7.2
gi|116686120 periaxin isoform 2 [Homo sapiens] 28 7.2
gi|93204867 G protein-coupled receptor 158 [Homo sapiens] 28 7.2
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 27 9.4
gi|5032295 dystrophin Dp116 isoform [Homo sapiens] 27 9.4
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 27 9.4
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 27 9.4
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 27 9.4
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 27 9.4
gi|5032311 dystrophin Dp140ab isoform [Homo sapiens] 27 9.4
>gi|51972226 hypothetical protein LOC402573 [Homo sapiens]
Length = 206
Score = 417 bits (1072), Expect = e-117
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MVVVMKFFRWVRRAWQRIISWVFFWRQKIKPTISGHPDSKKHSLKKMEKTLQVVETLRLV 60
MVVVMKFFRWVRRAWQRIISWVFFWRQKIKPTISGHPDSKKHSLKKMEKTLQVVETLRLV
Sbjct: 1 MVVVMKFFRWVRRAWQRIISWVFFWRQKIKPTISGHPDSKKHSLKKMEKTLQVVETLRLV 60
Query: 61 ELPKEAKPKLGESPELADPCVLAKTTEETEVELGQQGQSLLQLPRTAVKSVSTLMVSALQ 120
ELPKEAKPKLGESPELADPCVLAKTTEETEVELGQQGQSLLQLPRTAVKSVSTLMVSALQ
Sbjct: 61 ELPKEAKPKLGESPELADPCVLAKTTEETEVELGQQGQSLLQLPRTAVKSVSTLMVSALQ 120
Query: 121 SGWQMCSWKSSVSSASVSSQVRTQSPLKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHR 180
SGWQMCSWKSSVSSASVSSQVRTQSPLKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHR
Sbjct: 121 SGWQMCSWKSSVSSASVSSQVRTQSPLKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHR 180
Query: 181 RHHVRCHAAPRPNPAQSLKLDAQSPL 206
RHHVRCHAAPRPNPAQSLKLDAQSPL
Sbjct: 181 RHHVRCHAAPRPNPAQSLKLDAQSPL 206
>gi|73427803 lethal giant larvae homolog 2 isoform c [Homo sapiens]
Length = 1020
Score = 31.6 bits (70), Expect = 0.50
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 82 LAKTTEETEVELGQQGQSLLQLPRTAVKSVSTLMVSALQSGWQMCSWKSSVSSASVSSQV 141
LA + E G Q L+Q AV V++L AL S W++ ++ +S Q
Sbjct: 564 LAARSGPVRFEPGFQPFVLVQCQPPAV--VTSL---ALHSEWRLVAFGTSHGFGLFDHQQ 618
Query: 142 RTQSPLKT---PEAELLWEVYLV-LWAVRKHLRRLYRRQERHRRHHVRCHAAPRPNPAQS 197
R Q +K P +L E L + +++K LR+ +RR R R + H A P AQ
Sbjct: 619 RRQVFVKCTLHPSDQLALEGPLSRVKSLKKSLRQSFRRMRRSRVSSRKRHPAGPPGEAQE 678
Query: 198 LKLDAQSP 205
A+ P
Sbjct: 679 GSAKAERP 686
>gi|62739161 lethal giant larvae homolog 2 isoform a [Homo sapiens]
Length = 1015
Score = 31.6 bits (70), Expect = 0.50
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 82 LAKTTEETEVELGQQGQSLLQLPRTAVKSVSTLMVSALQSGWQMCSWKSSVSSASVSSQV 141
LA + E G Q L+Q AV V++L AL S W++ ++ +S Q
Sbjct: 564 LAARSGPVRFEPGFQPFVLVQCQPPAV--VTSL---ALHSEWRLVAFGTSHGFGLFDHQQ 618
Query: 142 RTQSPLKT---PEAELLWEVYLV-LWAVRKHLRRLYRRQERHRRHHVRCHAAPRPNPAQS 197
R Q +K P +L E L + +++K LR+ +RR R R + H A P AQ
Sbjct: 619 RRQVFVKCTLHPSDQLALEGPLSRVKSLKKSLRQSFRRMRRSRVSSRKRHPAGPPGEAQE 678
Query: 198 LKLDAQSP 205
A+ P
Sbjct: 679 GSAKAERP 686
>gi|222537714 taxilin beta [Homo sapiens]
Length = 684
Score = 30.0 bits (66), Expect = 1.4
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 36 HPDSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEVELGQ 95
HP+S H K+ + + + L + +P L S + P L T + E E G
Sbjct: 512 HPESTPHQSKETQPEIGSSQESADAALKEPEQPPLIPSRDSESP--LPPLTPQAEAEGGS 569
Query: 96 QGQSLLQLPRTAVKSVSTLMVSALQSGWQ--MCSWKSSVSSASVSSQVRTQSPLKTPEAE 153
+ + + + L G Q SWK ++ + Q T++ L+ EA+
Sbjct: 570 DAEPPSKASNSPAGLGAETQCEGLPVGAQADQASWKPEAEASGQAPQAPTEASLQKMEAD 629
Query: 154 L 154
+
Sbjct: 630 V 630
>gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo
sapiens]
Length = 179
Score = 29.6 bits (65), Expect = 1.9
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 59 LVELPKEAKPKLGES---PELADPC 80
L P+EAKPK G S PELA PC
Sbjct: 42 LCSSPEEAKPKQGSSAPRPELASPC 66
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 30 KPTISGHPDSKKHSLKKMEKTLQVVETL---RLVELPKEAKPKLGESPELADPCVLAKTT 86
K + ++H K+++KTL++ E L V L + AK L E+ L P V KT
Sbjct: 31892 KQEFKSKEEHERHVQKQIDKTLRMAEILSGTESVPLTQVAKEALREAAVLYKPAVSTKTV 31951
Query: 87 E 87
+
Sbjct: 31952 K 31952
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 30 KPTISGHPDSKKHSLKKMEKTLQVVETL---RLVELPKEAKPKLGESPELADPCVLAKTT 86
K + ++H K+++KTL++ E L V L + AK L E+ L P V KT
Sbjct: 25587 KQEFKSKEEHERHVQKQIDKTLRMAEILSGTESVPLTQVAKEALREAAVLYKPAVSTKTV 25646
Query: 87 E 87
+
Sbjct: 25647 K 25647
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 30 KPTISGHPDSKKHSLKKMEKTLQVVETL---RLVELPKEAKPKLGESPELADPCVLAKTT 86
K + ++H K+++KTL++ E L V L + AK L E+ L P V KT
Sbjct: 25520 KQEFKSKEEHERHVQKQIDKTLRMAEILSGTESVPLTQVAKEALREAAVLYKPAVSTKTV 25579
Query: 87 E 87
+
Sbjct: 25580 K 25580
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 29.3 bits (64), Expect = 2.5
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 30 KPTISGHPDSKKHSLKKMEKTLQVVETL---RLVELPKEAKPKLGESPELADPCVLAKTT 86
K + ++H K+++KTL++ E L V L + AK L E+ L P V KT
Sbjct: 25395 KQEFKSKEEHERHVQKQIDKTLRMAEILSGTESVPLTQVAKEALREAAVLYKPAVSTKTV 25454
Query: 87 E 87
+
Sbjct: 25455 K 25455
>gi|5729790 CCCTC-binding factor [Homo sapiens]
Length = 727
Score = 29.3 bits (64), Expect = 2.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 54 VETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEVELGQQGQSL 100
VETL ELP + P + P+ P K T+++++ ++G+ +
Sbjct: 175 VETLEQGELPPQEDPSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDV 221
>gi|134152667 ICBP90 binding protein 1 [Homo sapiens]
Length = 1440
Score = 28.9 bits (63), Expect = 3.2
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 27 QKIKPTISGHPDSK-KHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKT 85
+ + P HP SK +H LK + +V+E L+ + K L E ++AD +L +
Sbjct: 763 EALAPDSMSHPRSKTEHDLKSLSGLTEVMEILKEGSSGMDNKGPLTELEDVADVHMLVHS 822
Query: 86 TEETEVELGQ-QGQSLLQL 103
V L Q +LL+L
Sbjct: 823 PAHVRVRLDHYQYLALLRL 841
>gi|57222338 microfibrillar-associated protein 3-like isoform 2
[Homo sapiens]
Length = 306
Score = 28.9 bits (63), Expect = 3.2
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 27 QKIKPTISGHPDSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTT 86
Q+I +S HP SKK E V+ + EL E SPE A+P +T
Sbjct: 210 QQIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSAE------HSPETAEPSTDVTST 263
Query: 87 EETEVE 92
E T E
Sbjct: 264 ELTSEE 269
>gi|153792329 microfibrillar-associated protein 3-like isoform 1
[Homo sapiens]
Length = 409
Score = 28.9 bits (63), Expect = 3.2
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 27 QKIKPTISGHPDSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTT 86
Q+I +S HP SKK E V+ + EL E SPE A+P +T
Sbjct: 313 QQIAIKVSVHPQSKKEHADDQEGGQFEVKDVEETELSAE------HSPETAEPSTDVTST 366
Query: 87 EETEVE 92
E T E
Sbjct: 367 ELTSEE 372
>gi|239753941 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 28.5 bits (62), Expect = 4.2
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 101 LQLPRTAVKSVSTLMVSALQSGWQMCSWKSSVSSASVSSQVRTQSPLKTPEAELLWE 157
L+ P TAV+ +SG Q+ S + AS SSQ++T+ E E +W+
Sbjct: 15 LEAPGTAVRGSIAAEKRGTRSGSQLLRENSGAARASASSQLKTRK-----ENERVWD 66
>gi|29171755 PTPRF interacting protein alpha 2 [Homo sapiens]
Length = 1257
Score = 28.5 bits (62), Expect = 4.2
Identities = 37/164 (22%), Positives = 74/164 (45%), Gaps = 28/164 (17%)
Query: 34 SGHPDSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEVEL 93
SGH D++ ++ E+ + + +RL++ K ES EL A+ E +
Sbjct: 641 SGHSDAQTLAMMLQEQLDAINKEIRLIQEEK-------ESTELR-----AEEIENRVASV 688
Query: 94 GQQGQSLLQL-PRTAVKSVSTLMVSALQSGWQMCSWKSSVSSASVSSQVRTQSPLKTPEA 152
+G +L ++ P T++ +++ S+L S SS S + ++ +SP + +
Sbjct: 689 SLEGLNLARVHPGTSI--TASVTASSLAS--------SSPPSGHSTPKLTPRSPAREMDR 738
Query: 153 ELLWEVYLVLWAVRKHLRRLYRRQE--RHRRHHVRCHAAPRPNP 194
V + +RKH R++ +E R + ++C +P P P
Sbjct: 739 ---MGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPPTP 779
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 38 DSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEVELGQQG 97
D K + ++ +Q + + E K+A K+G S E+AD C ET+V
Sbjct: 1606 DGSKSTHEEQSSMIQT-QVPDIYEFLKDASDKMGHSDEVADECFKLHQVWETKVP----- 1659
Query: 98 QSLLQLP 104
+S+ +LP
Sbjct: 1660 ESIEELP 1666
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 38 DSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEVELGQQG 97
D K + ++ +Q + + E K+A K+G S E+AD C ET+V
Sbjct: 1606 DGSKSTHEEQSSMIQT-QVPDIYEFLKDASDKMGHSDEVADECFKLHQVWETKVP----- 1659
Query: 98 QSLLQLP 104
+S+ +LP
Sbjct: 1660 ESIEELP 1666
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 38 DSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEVELGQQG 97
D K + ++ +Q + + E K+A K+G S E+AD C ET+V
Sbjct: 1606 DGSKSTHEEQSSMIQT-QVPDIYEFLKDASDKMGHSDEVADECFKLHQVWETKVP----- 1659
Query: 98 QSLLQLP 104
+S+ +LP
Sbjct: 1660 ESIEELP 1666
>gi|55769554 protein tyrosine phosphatase, receptor type, f
polypeptide (PTPRF), interacting protein (liprin), alpha
4 [Homo sapiens]
Length = 701
Score = 28.1 bits (61), Expect = 5.5
Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 32/174 (18%)
Query: 34 SGHPDSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEVEL 93
SGH D++ ++ E+ + E +R+++ KE+ E ET V
Sbjct: 80 SGHSDAQTLAMMLQEQLDAINEEIRMIQEEKESTELRAEE-------------IETRVTS 126
Query: 94 GQQGQSLLQLPRTAVKSVSTLMVSALQSGWQMCSWKSS--VSSASVSSQVRTQSPLKTPE 151
G L+ R ++L +L S S +S+ ++S S + + + P
Sbjct: 127 GSMEALNLKQLRKRGSIPTSLTALSLASASPPLSGRSTPKLTSRSAAQDLDRMGVMTLPS 186
Query: 152 AELLWEVYLVLWAVRKHLRRLY----RRQERHRRHHVRCHAAPRPNPAQSLKLD 201
+RKH R+L R + R + ++C +P P+ ++L+L+
Sbjct: 187 ------------DLRKHRRKLLSPVSREENREDKATIKCETSP-PSSPRTLRLE 227
>gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]
Length = 3092
Score = 27.7 bits (60), Expect = 7.2
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 10 WVRRAWQRIISWV--FFWRQKIKPTISGHPDSKKHSLKKMEKTLQVVETLRLVELPKEAK 67
WVR +++ + FW + + ISG + K K+++ L + L +L K+ +
Sbjct: 1099 WVREWPGQVVLCISQMFWTSETQEVISGGTEGLKKYYKELQNQLNEIVELVRGKLSKQTR 1158
Query: 68 PKLG 71
LG
Sbjct: 1159 TTLG 1162
>gi|8923040 CDKN2A interacting protein [Homo sapiens]
Length = 580
Score = 27.7 bits (60), Expect = 7.2
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 83 AKTTEETEVELGQQGQSLLQLPRTAVKSVSTLMVSALQSGWQMCSWK------SSVSSAS 136
AKT+ +TE QQ S + +A+KS S + Q S SS SS+S
Sbjct: 159 AKTSAKTERASAQQENSSTCIG-SAIKSESGNSARSSGISSQNSSTSDGDRSVSSQSSSS 217
Query: 137 VSSQVRTQSPLKTPEAE 153
VSSQV T K EAE
Sbjct: 218 VSSQVTTAGSGKASEAE 234
>gi|116686120 periaxin isoform 2 [Homo sapiens]
Length = 1461
Score = 27.7 bits (60), Expect = 7.2
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 37 PDSKKHSLKKMEKTLQVVETLRLVELPKEAKPKLGESPELADPCVLAKTTEETEV-ELGQ 95
P + + L K+ + L VELPK ++ KL + PE+A P V E +V E+
Sbjct: 445 PKAPEVKLPKVPEAALPEVRLPEVELPKVSEMKLPKVPEMAVPEVRLPEVELPKVSEMKL 504
Query: 96 QGQSLLQLPRTAVKSVSTLMVSALQ 120
+ +P + V L VS ++
Sbjct: 505 PKVPEMAVPEVRLPEVQLLKVSEMK 529
>gi|93204867 G protein-coupled receptor 158 [Homo sapiens]
Length = 1215
Score = 27.7 bits (60), Expect = 7.2
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 63 PKEAKPKLGESPELADPCVLAKTTEETEVELGQQGQSLLQLPRTAVKSV--STLMVSALQ 120
P+ A G+S EL V +KT E ++G Q + S S L
Sbjct: 1107 PRAANVCAGQSEELPPKAVASKTENENLNQIGHQEKKTSSSEENVRGSYNSSNNFQQPLT 1166
Query: 121 SGWQMCSWK--------SSVSSASVSSQVRTQSPLKTPEAELLWEVYLV 161
S ++C W+ + S A +S + + + P E +W+ + V
Sbjct: 1167 SRAEVCPWEFETPAQPNAGRSVALPASSALSANKIAGPRKEEIWDSFKV 1215
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 131 SVSSASVSSQVRTQSP-LKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAA 189
S++ S SQ R+ + L + E+E E+ +L + + R L +R ++ H +
Sbjct: 3470 SLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLS 3529
Query: 190 PRPNPAQSLKLDAQSP 205
P P+P + + QSP
Sbjct: 3530 PLPSPPEMMPTSPQSP 3545
>gi|5032295 dystrophin Dp116 isoform [Homo sapiens]
Length = 956
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 131 SVSSASVSSQVRTQSP-LKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAA 189
S++ S SQ R+ + L + E+E E+ +L + + R L +R ++ H +
Sbjct: 749 SLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLS 808
Query: 190 PRPNPAQSLKLDAQSP 205
P P+P + + QSP
Sbjct: 809 PLPSPPEMMPTSPQSP 824
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 131 SVSSASVSSQVRTQSP-LKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAA 189
S++ S SQ R+ + L + E+E E+ +L + + R L +R ++ H +
Sbjct: 2134 SLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLS 2193
Query: 190 PRPNPAQSLKLDAQSP 205
P P+P + + QSP
Sbjct: 2194 PLPSPPEMMPTSPQSP 2209
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 131 SVSSASVSSQVRTQSP-LKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAA 189
S++ S SQ R+ + L + E+E E+ +L + + R L +R ++ H +
Sbjct: 2137 SLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLS 2196
Query: 190 PRPNPAQSLKLDAQSP 205
P P+P + + QSP
Sbjct: 2197 PLPSPPEMMPTSPQSP 2212
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 131 SVSSASVSSQVRTQSP-LKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAA 189
S++ S SQ R+ + L + E+E E+ +L + + R L +R ++ H +
Sbjct: 3355 SLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLS 3414
Query: 190 PRPNPAQSLKLDAQSP 205
P P+P + + QSP
Sbjct: 3415 PLPSPPEMMPTSPQSP 3430
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 131 SVSSASVSSQVRTQSP-LKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAA 189
S++ S SQ R+ + L + E+E E+ +L + + R L +R ++ H +
Sbjct: 3474 SLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLS 3533
Query: 190 PRPNPAQSLKLDAQSP 205
P P+P + + QSP
Sbjct: 3534 PLPSPPEMMPTSPQSP 3549
>gi|5032311 dystrophin Dp140ab isoform [Homo sapiens]
Length = 1230
Score = 27.3 bits (59), Expect = 9.4
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 131 SVSSASVSSQVRTQSP-LKTPEAELLWEVYLVLWAVRKHLRRLYRRQERHRRHHVRCHAA 189
S++ S SQ R+ + L + E+E E+ +L + + R L +R ++ H +
Sbjct: 1005 SLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLS 1064
Query: 190 PRPNPAQSLKLDAQSP 205
P P+P + + QSP
Sbjct: 1065 PLPSPPEMMPTSPQSP 1080
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.129 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,205,258
Number of Sequences: 37866
Number of extensions: 331466
Number of successful extensions: 1271
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 54
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.