Guide to the Human Genome
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Name: LOC402573 Sequence: fasta or formatted (206aa) NCBI GI: 51972226
Description:

hypothetical protein LOC402573

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         13           2
 C cysteine            1.5          3           1
 D aspartate           1.5          3           1
 E glutamate           6.8         14           2
 F phenylalanine       1.9          4           2
 G glycine             2.4          5           1
 H histidine           3.4          7           2
 I isoleucine          1.9          4           2
 K lysine              8.3         17           2
 L leucine            11.7         24           2
 M methionine          2.4          5           1
 N asparagine          0.5          1           1
 P proline             6.3         13           1
 Q glutamine           6.8         14           2
 R arginine            8.7         18           2
 S serine             10.2         21           2
 T threonine           4.9         10           2
 V valine              9.7         20           3
 W tryptophan          3.9          8           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC402573 
LLGL2                 0.018   lethal giant larvae homolog 2 isoform c 
LLGL2                 0.018   lethal giant larvae homolog 2 isoform a 
TXLNB                 0.013   taxilin beta 
LOC100290964          0.013   PREDICTED: hypothetical protein XP_002347802 
TTN                   0.010   titin isoform N2-A 
TTN                   0.010   titin isoform novex-2 
TTN                   0.010   titin isoform novex-1 
TTN                   0.010   titin isoform N2-B 
CTCF                  0.010   CCCTC-binding factor 
UHRF1BP1              0.010   ICBP90 binding protein 1 
MFAP3L                0.010   microfibrillar-associated protein 3-like isoform 2 [...
MFAP3L                0.010   microfibrillar-associated protein 3-like isoform 1 ...
LOC100292765          0.008   PREDICTED: hypothetical protein 
PPFIA2                0.008   PTPRF interacting protein alpha 2 
CASP8AP2              0.008   caspase 8 associated protein 2 
CASP8AP2              0.008   caspase 8 associated protein 2 
CASP8AP2              0.008   caspase 8 associated protein 2 
PPFIA4                0.008   protein tyrosine phosphatase, receptor type, f polyp...
DNAH12                0.008   dynein heavy chain domain 2 isoform 1 
CDKN2AIP              0.008   CDKN2A interacting protein 
PRX                   0.008   periaxin isoform 2 
GPR158                0.008   G protein-coupled receptor 158 
DMD                   0.005   dystrophin Dp427c isoform 
DMD                   0.005   dystrophin Dp116 isoform 
DMD                   0.005   dystrophin Dp260-2 isoform 
DMD                   0.005   dystrophin Dp260-1 isoform 
DMD                   0.005   dystrophin Dp427p2 isoform 
DMD                   0.005   dystrophin Dp427p1 isoform 
DMD                   0.005   dystrophin Dp140ab isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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