Search of human proteins with 13376701

Search of human proteins with 13376701

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]
         (195 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]        395   e-110
gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]       371   e-103
gi|118403326 transmembrane protein 134 isoform b [Homo sapiens]       357   3e-99
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]     44   9e-05
gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens]     44   9e-05
gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens]     44   9e-05
gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens]     44   9e-05
gi|13129000 meteorin, glial cell differentiation regulator [Homo...    32   0.45 
gi|239745297 PREDICTED: similar to hCG2004312 [Homo sapiens]           31   0.58 
gi|239745266 PREDICTED: similar to cis-Golgi matrix protein GM13...    31   0.58 
gi|13899255 membrane frizzled-related protein [Homo sapiens]           30   1.3  
gi|42716289 erythrocyte membrane protein band 4.1 (elliptocytosi...    30   1.3  
gi|5174633 receptor for egg jelly-like protein precursor [Homo s...    29   2.2  
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]    29   2.9  
gi|196123585 cytochrome c oxidase subunit III [Homo sapiens nean...    28   3.8  
gi|251831113 cytochrome c oxidase subunit III [Homo sapiens]           28   3.8  
gi|166197712 LSM14 homolog A isoform a [Homo sapiens]                  28   3.8  
gi|166197710 LSM14 homolog A isoform b [Homo sapiens]                  28   3.8  
gi|11321642 bromodomain containing protein 1 [Homo sapiens]            28   3.8  
gi|94721342 zinc finger and BTB domain containing 8A [Homo sapiens]    28   6.5  
gi|55769585 HEF-like protein [Homo sapiens]                            28   6.5  
gi|124107616 claudin 23 [Homo sapiens]                                 28   6.5  
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap...    28   6.5  
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap...    28   6.5  
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]             28   6.5  
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]            27   8.4  
gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo ...    27   8.4  
gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo ...    27   8.4  
gi|206597541 solute carrier family 39 (metal ion transporter), m...    27   8.4  
gi|206597539 solute carrier family 39 (metal ion transporter), m...    27   8.4  

>gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]
          Length = 195

 Score =  395 bits (1015), Expect = e-110
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
           MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1   MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60

Query: 61  ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
           ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN
Sbjct: 61  ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120

Query: 121 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 180
           RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK
Sbjct: 121 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 180

Query: 181 GHRGFQFFYLPYFEK 195
           GHRGFQFFYLPYFEK
Sbjct: 181 GHRGFQFFYLPYFEK 195


>gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]
          Length = 186

 Score =  371 bits (953), Expect = e-103
 Identities = 186/195 (95%), Positives = 186/195 (95%), Gaps = 9/195 (4%)

Query: 1   MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
           MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1   MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60

Query: 61  ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
           ENDEDGAQASPEPDGGVGT         SSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN
Sbjct: 61  ENDEDGAQASPEPDGGVGT---------SSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 111

Query: 121 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 180
           RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK
Sbjct: 112 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 171

Query: 181 GHRGFQFFYLPYFEK 195
           GHRGFQFFYLPYFEK
Sbjct: 172 GHRGFQFFYLPYFEK 186


>gi|118403326 transmembrane protein 134 isoform b [Homo sapiens]
          Length = 180

 Score =  357 bits (917), Expect = 3e-99
 Identities = 180/195 (92%), Positives = 180/195 (92%), Gaps = 15/195 (7%)

Query: 1   MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
           MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1   MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60

Query: 61  ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
           ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN
Sbjct: 61  ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120

Query: 121 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 180
           RRVVLASFLLLLLGL               GVSSAIFFVPGFLLLVPGVYHVIFIYCAVK
Sbjct: 121 RRVVLASFLLLLLGL---------------GVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 165

Query: 181 GHRGFQFFYLPYFEK 195
           GHRGFQFFYLPYFEK
Sbjct: 166 GHRGFQFFYLPYFEK 180


>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
          Length = 183

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 79  TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLLLLLGLVLI 138
           +R +  T I SS+  +S +SS+     +     T   +  K    +  + +L L+G  LI
Sbjct: 67  SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYK---AIALATVLFLIGAFLI 123

Query: 139 LVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 194
           ++G  L +      G   A+   + G L+ +PG YH+   Y A KG+RG+ +  +P F+
Sbjct: 124 IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 182


>gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
          Length = 120

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 79  TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLLLLLGLVLI 138
           +R +  T I SS+  +S +SS+     +     T   +  K    +  + +L L+G  LI
Sbjct: 4   SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYK---AIALATVLFLIGAFLI 60

Query: 139 LVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 194
           ++G  L +      G   A+   + G L+ +PG YH+   Y A KG+RG+ +  +P F+
Sbjct: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 119


>gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
          Length = 120

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 79  TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLLLLLGLVLI 138
           +R +  T I SS+  +S +SS+     +     T   +  K    +  + +L L+G  LI
Sbjct: 4   SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYK---AIALATVLFLIGAFLI 60

Query: 139 LVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 194
           ++G  L +      G   A+   + G L+ +PG YH+   Y A KG+RG+ +  +P F+
Sbjct: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 119


>gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
          Length = 120

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 79  TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLLLLLGLVLI 138
           +R +  T I SS+  +S +SS+     +     T   +  K    +  + +L L+G  LI
Sbjct: 4   SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYK---AIALATVLFLIGAFLI 60

Query: 139 LVGVGLEA--TPSPGVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 194
           ++G  L +      G   A+   + G L+ +PG YH+   Y A KG+RG+ +  +P F+
Sbjct: 61  IIGSLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 119


>gi|13129000 meteorin, glial cell differentiation regulator [Homo
           sapiens]
          Length = 293

 Score = 31.6 bits (70), Expect = 0.45
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 13  AFELSLEDGGPGPESSGVARFGPLHFERRARFEVA--DEDKQSRLRYQNLENDEDGAQAS 70
           A EL L +G PGP      R+GP   ERRA F  A   +D   R+     E  EDG    
Sbjct: 102 ALELLLAEG-PGPAGGRCVRWGPR--ERRALFLQATPHQDISRRVAAFRFELREDGRPEL 158

Query: 71  PEPDGGVGTRDSSR 84
           P    G+G   + R
Sbjct: 159 PPQAHGLGVDGACR 172


>gi|239745297 PREDICTED: similar to hCG2004312 [Homo sapiens]
          Length = 131

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 19  EDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDG-AQASPEPDGGV 77
           E   P PES G + FG  H   +   E   E   +R + Q       G  QA P P G  
Sbjct: 48  EVAAPAPESGGESVFGETHRALQGAMEKLQESTSARGQCQRRSTGRGGHRQAGPGPGGDE 107

Query: 78  G 78
           G
Sbjct: 108 G 108


>gi|239745266 PREDICTED: similar to cis-Golgi matrix protein GM130
           [Homo sapiens]
          Length = 131

 Score = 31.2 bits (69), Expect = 0.58
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 19  EDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDG-AQASPEPDGGV 77
           E   P PES G + FG  H   +   E   E   +R + Q       G  QA P P G  
Sbjct: 48  EVAAPAPESGGESVFGETHRALQGAMEKLQESTSARGQCQRRSTGRGGHRQAGPGPGGDE 107

Query: 78  G 78
           G
Sbjct: 108 G 108


>gi|13899255 membrane frizzled-related protein [Homo sapiens]
          Length = 579

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 123 VVLASFLLLLLGLVLILVGVGLEATPSPGVS 153
           ++L+S LLLLLGL++ ++   L+A P  G S
Sbjct: 71  LLLSSLLLLLLGLLVAIILAQLQAAPPSGAS 101


>gi|42716289 erythrocyte membrane protein band 4.1 (elliptocytosis
           1, RH-linked) isoform 1 [Homo sapiens]
          Length = 775

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 2   SAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLH----FERRARFEVADEDKQSRLRY 57
           ++ R   S+D A  +   D  P P S+     G +      +  A+  V  + ++  ++ 
Sbjct: 500 ASKRASRSLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAKKTVVPKAQKETVKA 559

Query: 58  QNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRS 104
           +  + DE   QA PEP       D S+  I+    S S +  +   S
Sbjct: 560 EVKKEDEPPEQAEPEPTEAWKDLDKSQEEIKKHHASISELKKNFMES 606


>gi|5174633 receptor for egg jelly-like protein precursor [Homo
            sapiens]
          Length = 2253

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 91   QWSFSTISSSTQRSYNTCCSWTQHPLIQKNR---RVVLASFLLLLLGLVLIL 139
            +W++S +  STQ  ++ C S  Q+     NR    + L+SF+L+++ +++ L
Sbjct: 2115 EWNYSNLIHSTQTVFSYCVSAFQNTEFSNNRILGVLFLSSFMLVMICVLINL 2166


>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
          Length = 2608

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 61   ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCS 110
            + DEDG    P    GV +R  +R S+ SS    ST SSS   S ++ CS
Sbjct: 2294 DEDEDG----PGLAAGVPSRFLARLSVSSSSSGSSTSSSSGSVSTSSLCS 2339


>gi|196123585 cytochrome c oxidase subunit III [Homo sapiens
           neanderthalensis]
          Length = 260

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 97  ISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLL-LLLGLVLILVGVG----LEATPSPG 151
           +++S   +     +W  H L++ NR  ++ + L+ +LLGL   L+          T S G
Sbjct: 132 LNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASEYFESPFTISDG 191

Query: 152 VSSAIFFV 159
           +  + FFV
Sbjct: 192 IYGSTFFV 199


>gi|251831113 cytochrome c oxidase subunit III [Homo sapiens]
          Length = 261

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 97  ISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFLL-LLLGLVLILVGVG----LEATPSPG 151
           +++S   +     +W  H L++ NR  ++ + L+ +LLGL   L+          T S G
Sbjct: 132 LNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASEYFESPFTISDG 191

Query: 152 VSSAIFFV 159
           +  + FFV
Sbjct: 192 IYGSTFFV 199


>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
          Length = 463

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 29  GVARFGPLHFERRARFEVADED-----------KQSRLRYQNLENDEDGAQASPEPDGGV 77
           G+ R GP+ FE+   FE A+              + +L+   LE  E       + D GV
Sbjct: 283 GIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGV 342

Query: 78  GTRDS 82
            T++S
Sbjct: 343 DTQNS 347


>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
          Length = 463

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 29  GVARFGPLHFERRARFEVADED-----------KQSRLRYQNLENDEDGAQASPEPDGGV 77
           G+ R GP+ FE+   FE A+              + +L+   LE  E       + D GV
Sbjct: 283 GIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGV 342

Query: 78  GTRDS 82
            T++S
Sbjct: 343 DTQNS 347


>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
          Length = 1058

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 45  EVADEDKQSRLRYQNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRS 104
           EV +E    RL    L N   GA++  EP GG+G + + R    S     S+ S     S
Sbjct: 809 EVEEESPGKRLD-AGLTNGFGGARSEQEPGGGLGRKATPRRRCASESSISSSNSPLCDSS 867

Query: 105 YN 106
           +N
Sbjct: 868 FN 869


>gi|94721342 zinc finger and BTB domain containing 8A [Homo sapiens]
          Length = 441

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 41  RARFEVADEDKQSRLRYQNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSS 100
           ++  ++++++K       + + + +G + S    GG     SS  S  S +     IS  
Sbjct: 119 KSSLDISEKEKDRYFSLSDKDANSNGVERSSFYSGGWQEGSSSPRSHLSPEQGTGIISGK 178

Query: 101 TQRSYNTCCSWTQHPLIQKNRRVVLA 126
           +   YN       HP  QKN +  LA
Sbjct: 179 SWNKYN------YHPASQKNTQQPLA 198


>gi|55769585 HEF-like protein [Homo sapiens]
          Length = 786

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 70  SPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRS 104
           SPEPD   G+   SR SI SS  + ST  SS+  S
Sbjct: 392 SPEPDRLSGSSSDSRASIVSSCSTTSTDDSSSSSS 426


>gi|124107616 claudin 23 [Homo sapiens]
          Length = 292

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 92  WSFSTISSSTQRSYNTCCSW----TQHPLIQKNRRVVLASFLLLLLGLVLILVGVGL-EA 146
           W      SS +R       W     Q  L+   R +++ S    +LGL+L  +GV   + 
Sbjct: 50  WDMCREQSSRERECGQTDQWGYFEAQPVLVA--RALMVTSLAATVLGLLLASLGVRCWQD 107

Query: 147 TPS---PGVSSAIFFVPGFLLLVPGVYHVIFI 175
            P+    G+S  + FV G L L+P  ++  F+
Sbjct: 108 EPNFVLAGLSGVVLFVAGLLGLIPVSWYNHFL 139


>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
           sapiens]
          Length = 1094

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 29  GVARFGPLHF-------ERRARFEVADEDKQSRLRYQNLENDEDGAQASPEP 73
           GV++  P H         R AR E   ED  SRL  ++ E D+D     P+P
Sbjct: 193 GVSKKAPRHHLSVPCTRPREARQEA--EDSTSRLSAESGETDQDAGDVGPDP 242


>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
           sapiens]
          Length = 1043

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 29  GVARFGPLHF-------ERRARFEVADEDKQSRLRYQNLENDEDGAQASPEP 73
           GV++  P H         R AR E   ED  SRL  ++ E D+D     P+P
Sbjct: 142 GVSKKAPRHHLSVPCTRPREARQEA--EDSTSRLSAESGETDQDAGDVGPDP 191


>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
          Length = 360

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 66  GAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCS 110
           GA+ASP P     ++  +R   RSS  S S+ SSS+  S ++  S
Sbjct: 174 GAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 218


>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 577

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 70  SPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNT-----CCSWTQHPL 116
           SP P    G R S+ TS+ S   +  T SSST  ++++      C    HPL
Sbjct: 126 SPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPL 177


>gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo
           sapiens]
          Length = 233

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 70  SPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNT-----CCSWTQHPL 116
           SP P    G R S+ TS+ S   +  T SSST  ++++      C    HPL
Sbjct: 126 SPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPL 177


>gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo
           sapiens]
          Length = 232

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 70  SPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNT-----CCSWTQHPL 116
           SP P    G R S+ TS+ S   +  T SSST  ++++      C    HPL
Sbjct: 125 SPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPL 176


>gi|206597541 solute carrier family 39 (metal ion transporter),
           member 5 [Homo sapiens]
          Length = 540

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 121 RRVVLASFLLLLLGLVLILVGVGLEATPSP------GVSSAIFFVPGFLLLVPGV 169
           RR++L S +   LGL   ++GVGL   P P      GV++ +F     + ++P +
Sbjct: 443 RRLLLLSLVSGALGLGGAVLGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPAL 497


>gi|206597539 solute carrier family 39 (metal ion transporter),
           member 5 [Homo sapiens]
          Length = 540

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 121 RRVVLASFLLLLLGLVLILVGVGLEATPSP------GVSSAIFFVPGFLLLVPGV 169
           RR++L S +   LGL   ++GVGL   P P      GV++ +F     + ++P +
Sbjct: 443 RRLLLLSLVSGALGLGGAVLGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPAL 497


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,172,417
Number of Sequences: 37866
Number of extensions: 353503
Number of successful extensions: 1255
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 34
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.