Guide to the Human Genome
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Name: COX3 Sequence: fasta or formatted (260aa) NCBI GI: 196123585
Description:

cytochrome c oxidase subunit III

Homo sapiens neanderthalensis sequence

Other entries for this name:
alt prot [261aa] cytochrome c oxidase subunit III
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         15           3
 C cysteine            0.4          1           1
 D aspartate           1.2          3           1
 E glutamate           2.7          7           1
 F phenylalanine       8.8         23           3
 G glycine             7.3         19           2
 H histidine           6.5         17           2
 I isoleucine          5.0         13           2
 K lysine              1.2          3           1
 L leucine            13.1         34           2
 M methionine          3.8         10           1
 N asparagine          2.3          6           2
 P proline             5.0         13           2
 Q glutamine           3.5          9           1
 R arginine            1.9          5           1
 S serine              7.7         20           2
 T threonine           9.6         25           2
 V valine              5.4         14           2
 W tryptophan          4.6         12           2
 Y tyrosine            4.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome c oxidase subunit III 
COX3                  0.994   cytochrome c oxidase subunit III 
ND5                   0.013   NADH dehydrogenase subunit 5 
ND5                   0.011   NADH dehydrogenase subunit 5 
B4GALT5               0.011   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5 ...
CYP4Z1                0.009   cytochrome P450 4Z1 
TMEM134               0.009   transmembrane protein 134 isoform c 
TMEM134               0.006   transmembrane protein 134 isoform a 
BCDIN3D               0.006   BCDIN3 domain containing 
SLC4A1                0.006   solute carrier family 4, anion exchanger, member 1 [H...
DIRC2                 0.006   disrupted in renal carcinoma 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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