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Search of human proteins with 51558701
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51558701 Bcl2 modifying factor isoform bmf-2 [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51558701 Bcl2 modifying factor isoform bmf-2 [Homo sapiens] 346 4e-96
gi|15723378 Bcl2 modifying factor isoform bmf-1 [Homo sapiens] 334 2e-92
gi|51558688 Bcl2 modifying factor isoform bmf-1 [Homo sapiens] 334 2e-92
gi|51558704 Bcl2 modifying factor isoform bmf-3 [Homo sapiens] 205 2e-53
gi|239753233 PREDICTED: similar to hCG1732629 [Homo sapiens] 34 0.064
gi|239747810 PREDICTED: hypothetical protein LOC653924 [Homo sap... 34 0.064
gi|239741682 PREDICTED: hypothetical protein LOC653924 [Homo sap... 34 0.064
gi|4758010 clock [Homo sapiens] 32 0.19
gi|116812614 glycerol-3-phosphate acyltransferase 2, mitochondri... 32 0.32
gi|144226234 metastasis suppressor 1 [Homo sapiens] 32 0.32
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 31 0.41
gi|54607014 TBC1 domain family, member 25 [Homo sapiens] 30 0.92
gi|46370073 GRB2-associated binding protein 1 isoform b [Homo sa... 29 1.6
gi|46370071 GRB2-associated binding protein 1 isoform a [Homo sa... 29 1.6
gi|239756880 PREDICTED: hypothetical protein [Homo sapiens] 29 2.1
gi|239751374 PREDICTED: hypothetical protein XP_002347830 [Homo ... 29 2.1
gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinas... 28 2.7
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 28 2.7
gi|34996489 pleckstrin homology domain interacting protein [Homo... 28 2.7
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 28 2.7
gi|172072684 PR domain containing 1, with ZNF domain isoform 1 [... 28 3.5
gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [H... 28 3.5
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 28 3.5
gi|51873055 fibulin 2 isoform b precursor [Homo sapiens] 28 3.5
gi|51873053 fibulin 2 isoform a precursor [Homo sapiens] 28 3.5
gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo sap... 28 3.5
gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sap... 28 3.5
gi|38045915 pregnancy-associated plasma protein A preproprotein ... 28 4.6
gi|169203191 PREDICTED: hypothetical protein [Homo sapiens] 28 4.6
gi|169203681 PREDICTED: hypothetical protein [Homo sapiens] 28 4.6
>gi|51558701 Bcl2 modifying factor isoform bmf-2 [Homo sapiens]
Length = 163
Score = 346 bits (888), Expect = 4e-96
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 60
MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
Sbjct: 1 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 60
Query: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 120
RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
Sbjct: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 120
Query: 121 PEGQWQHQAEHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR 163
PEGQWQHQAEHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR
Sbjct: 121 PEGQWQHQAEHQQNQNRVWWQILLFLHNLALNGEENRNGAGPR 163
>gi|15723378 Bcl2 modifying factor isoform bmf-1 [Homo sapiens]
Length = 184
Score = 334 bits (856), Expect = 2e-92
Identities = 163/184 (88%), Positives = 163/184 (88%), Gaps = 21/184 (11%)
Query: 1 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 60
MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
Sbjct: 1 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 60
Query: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 120
RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
Sbjct: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 120
Query: 121 PEGQWQHQAE---------------------HQQNQNRVWWQILLFLHNLALNGEENRNG 159
PEGQWQHQAE HQQNQNRVWWQILLFLHNLALNGEENRNG
Sbjct: 121 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG 180
Query: 160 AGPR 163
AGPR
Sbjct: 181 AGPR 184
>gi|51558688 Bcl2 modifying factor isoform bmf-1 [Homo sapiens]
Length = 184
Score = 334 bits (856), Expect = 2e-92
Identities = 163/184 (88%), Positives = 163/184 (88%), Gaps = 21/184 (11%)
Query: 1 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 60
MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
Sbjct: 1 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 60
Query: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 120
RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP
Sbjct: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 120
Query: 121 PEGQWQHQAE---------------------HQQNQNRVWWQILLFLHNLALNGEENRNG 159
PEGQWQHQAE HQQNQNRVWWQILLFLHNLALNGEENRNG
Sbjct: 121 PEGQWQHQAEVQIARKLQCIADQFHRLHVQQHQQNQNRVWWQILLFLHNLALNGEENRNG 180
Query: 160 AGPR 163
AGPR
Sbjct: 181 AGPR 184
>gi|51558704 Bcl2 modifying factor isoform bmf-3 [Homo sapiens]
Length = 129
Score = 205 bits (521), Expect = 2e-53
Identities = 104/130 (80%), Positives = 107/130 (82%), Gaps = 5/130 (3%)
Query: 1 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 60
MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL
Sbjct: 1 MEPSQCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGL 60
Query: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 120
RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFY A P S P
Sbjct: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYAPAE-----PKSCVVADPPLPAQ 115
Query: 121 PEGQWQHQAE 130
P +W+ + E
Sbjct: 116 PCFEWRREQE 125
>gi|239753233 PREDICTED: similar to hCG1732629 [Homo sapiens]
Length = 224
Score = 33.9 bits (76), Expect = 0.064
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 105 PLPASFPAVLPIGEQPPEGQWQHQAEHQQNQNRVWWQILLFLHNL 149
P PA L G PP+G W+ Q +QN ++ QILL +H L
Sbjct: 4 PPPACAVRGLLAGRVPPQGPWELQGILLLSQNELYRQILLLMHLL 48
>gi|239747810 PREDICTED: hypothetical protein LOC653924 [Homo
sapiens]
Length = 250
Score = 33.9 bits (76), Expect = 0.064
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 105 PLPASFPAVLPIGEQPPEGQWQHQAEHQQNQNRVWWQILLFLHNL 149
P PA L G PP+G W+ Q +QN ++ QILL +H L
Sbjct: 4 PPPACAVRGLLAGRVPPQGPWELQGILLLSQNELYRQILLLMHLL 48
>gi|239741682 PREDICTED: hypothetical protein LOC653924 [Homo
sapiens]
Length = 224
Score = 33.9 bits (76), Expect = 0.064
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 105 PLPASFPAVLPIGEQPPEGQWQHQAEHQQNQNRVWWQILLFLHNL 149
P PA L G PP+G W+ Q +QN ++ QILL +H L
Sbjct: 4 PPPACAVRGLLAGRVPPQGPWELQGILLLSQNELYRQILLLMHLL 48
>gi|4758010 clock [Homo sapiens]
Length = 846
Score = 32.3 bits (72), Expect = 0.19
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 65 QEDKATQTLSPASPSQGVMLPCGVTEEPQ------RLFYGNAGYRLPLPASFPAVLPIGE 118
Q + Q S PSQ + T+ PQ RL +GN +L L A+FP L
Sbjct: 760 QSSQEQQLTSVQQPSQAQL-----TQPPQQFLQTSRLLHGNPSTQLILSAAFP--LQQST 812
Query: 119 QPPEGQWQHQAEHQQNQNR 137
P QHQ++ QQ +R
Sbjct: 813 FPQSHHQQHQSQQQQQLSR 831
>gi|116812614 glycerol-3-phosphate acyltransferase 2, mitochondrial
[Homo sapiens]
Length = 795
Score = 31.6 bits (70), Expect = 0.32
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 117 GEQPPEGQWQHQAEHQQNQNRVWWQILLFLHNL 149
G PP+G W+ Q +QN ++ QILL +H L
Sbjct: 566 GRVPPQGPWELQGILLLSQNELYRQILLLMHLL 598
>gi|144226234 metastasis suppressor 1 [Homo sapiens]
Length = 755
Score = 31.6 bits (70), Expect = 0.32
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 74 SPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQPPEGQWQHQAEHQQ 133
SP SPS G P GVT P ++ G A PLP P+ I E+ + + +AE Q+
Sbjct: 644 SPESPSVGEG-PQGVTSMPSSMWSGQASVNPPLPGPKPS---IPEEHRQAIPESEAEDQE 699
Query: 134 NQ 135
+
Sbjct: 700 RE 701
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 31.2 bits (69), Expect = 0.41
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 1 MEPSQCVEELEDDVFQPEDG-EPVTQPGSLL-SADLFAQSLLDCPLSRLQLFPLTHCCGP 58
M+P + V+ +QP G + + G L +A L A +LD L +L + PL G
Sbjct: 2028 MQPLEMVKPQSGSPYQPMSGNQALVYEGQLSQAAGLGASQMLDSQLPQLTM-PLPRY-GS 2085
Query: 59 GLRPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGE 118
G +P ++LP + P + A R+P P S P VL
Sbjct: 2086 GQQP-------------------LILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSR 2126
Query: 119 QPPEGQWQ--HQAEHQQN 134
+P + + + H A+ +QN
Sbjct: 2127 EPSQMEMKGFHFADSKQN 2144
>gi|54607014 TBC1 domain family, member 25 [Homo sapiens]
Length = 688
Score = 30.0 bits (66), Expect = 0.92
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
Query: 7 VEELEDDVFQPEDGEPVTQ---PGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPT 63
+++L D++ D P+ Q P +L+S+ ++ LL+ P L F P+
Sbjct: 510 LQQLRDNMGSRRD--PLVQLPHPAALISSKSLSEPLLNSPDPLLSSFSHPDSPSSSSPPS 567
Query: 64 SQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQPPE 122
+QE T ++ SP +M G ++P + S P V P+G PP+
Sbjct: 568 TQEASPTGDMAVGSP---LMQEVGSPKDPGK--------------SLPPVPPMGLPPPQ 609
>gi|46370073 GRB2-associated binding protein 1 isoform b [Homo
sapiens]
Length = 694
Score = 29.3 bits (64), Expect = 1.6
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 24/84 (28%)
Query: 15 FQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQTLS 74
F P + +PV PGS L Q+ D PL+ + P P++Q D ++ TL
Sbjct: 117 FNPTEEDPVKPPGSSL------QAPADLPLA-INTAP----------PSTQADSSSATLP 159
Query: 75 PASPSQGVMLP-----CGVTEEPQ 93
P P Q + +P G+ E+PQ
Sbjct: 160 P--PYQLINVPPHLETLGIQEDPQ 181
>gi|46370071 GRB2-associated binding protein 1 isoform a [Homo
sapiens]
Length = 724
Score = 29.3 bits (64), Expect = 1.6
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 24/84 (28%)
Query: 15 FQPEDGEPVTQPGSLLSADLFAQSLLDCPLSRLQLFPLTHCCGPGLRPTSQEDKATQTLS 74
F P + +PV PGS L Q+ D PL+ + P P++Q D ++ TL
Sbjct: 117 FNPTEEDPVKPPGSSL------QAPADLPLA-INTAP----------PSTQADSSSATLP 159
Query: 75 PASPSQGVMLP-----CGVTEEPQ 93
P P Q + +P G+ E+PQ
Sbjct: 160 P--PYQLINVPPHLETLGIQEDPQ 181
>gi|239756880 PREDICTED: hypothetical protein [Homo sapiens]
Length = 376
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 102 YRLPLPASFPAVLPIGEQPPEGQWQHQAEHQQNQNRVWW 140
Y L LP S PAVLP PP+ + + A + + + W
Sbjct: 94 YSLELPLSHPAVLPTTYSPPKAERKRLAGVEGSTSSASW 132
>gi|239751374 PREDICTED: hypothetical protein XP_002347830 [Homo
sapiens]
Length = 376
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 102 YRLPLPASFPAVLPIGEQPPEGQWQHQAEHQQNQNRVWW 140
Y L LP S PAVLP PP+ + + A + + + W
Sbjct: 94 YSLELPLSHPAVLPTTYSPPKAERKRLAGVEGSTSSASW 132
>gi|57242761 receptor (TNFRSF)-interacting serine-threonine kinase 1
[Homo sapiens]
Length = 671
Score = 28.5 bits (62), Expect = 2.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 66 EDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGY 102
E K T S AS V P G+T +PQ L+ N Y
Sbjct: 433 EGKGTAYSSAASHGNAVHQPSGLTSQPQVLYQNNGLY 469
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 28.5 bits (62), Expect = 2.7
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 85 PCGVTEEPQRLFYGNAGYRLPLPASFPAVLP--------IGEQPPEGQWQHQAEHQQNQN 136
P + Q+ + G Y PA++ V P + +QPP Q Q + QQ Q
Sbjct: 311 PAAPVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQ 370
Query: 137 R 137
+
Sbjct: 371 Q 371
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 28.5 bits (62), Expect = 2.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 5 QCVEELEDDVFQPEDGEPVTQPGSLLSADLFAQSLLDCPL 44
QC EEL + +FQ ED EP QP LL + + ++D P+
Sbjct: 1324 QC-EELLNLIFQCEDSEPFRQPVDLLEYPDY-RDIIDTPM 1361
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 28.5 bits (62), Expect = 2.7
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 58 PGLRPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPI- 116
P P ++Q L ++PS C L G++ PLP PA LP+
Sbjct: 919 PPAEPPGLHCSSSQQLLSSTPS------CHAAPPAHPLLAHTGGHQSPLPPLVPAALPLQ 972
Query: 117 GEQPP 121
G PP
Sbjct: 973 GASPP 977
>gi|172072684 PR domain containing 1, with ZNF domain isoform 1
[Homo sapiens]
Length = 825
Score = 28.1 bits (61), Expect = 3.5
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 51 PLTHCCGPGLRPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYG--NAGYRLPLPA 108
P+ P S D++ ++ SP S + P G + R Y NA Y
Sbjct: 328 PIPSSTTPSPSARSSPDQSLKSSSPHSSPGNTVSPVGPGSQEHRDSYAYLNASYGTEGLG 387
Query: 109 SFPAVLPIGEQPP 121
S+P P+ PP
Sbjct: 388 SYPGYAPLPHLPP 400
>gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [Homo
sapiens]
Length = 691
Score = 28.1 bits (61), Expect = 3.5
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 51 PLTHCCGPGLRPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYG--NAGYRLPLPA 108
P+ P S D++ ++ SP S + P G + R Y NA Y
Sbjct: 194 PIPSSTTPSPSARSSPDQSLKSSSPHSSPGNTVSPVGPGSQEHRDSYAYLNASYGTEGLG 253
Query: 109 SFPAVLPIGEQPP 121
S+P P+ PP
Sbjct: 254 SYPGYAPLPHLPP 266
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 28.1 bits (61), Expect = 3.5
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 61 RPTSQEDKATQTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVLPIGEQP 120
RP SQ D LS Q P G P + R PA+FP + +Q
Sbjct: 209 RPASQSDAMDPLLSGLHIQQQSH-PSGSLAPPHHPMQPVSVNRQMNPANFPQLQQQQQQQ 267
Query: 121 PEGQWQHQAEHQQNQNR 137
+ Q Q Q + QQ Q +
Sbjct: 268 QQQQQQQQQQQQQQQQQ 284
>gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]
Length = 1184
Score = 28.1 bits (61), Expect = 3.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 55 CCGPGLRPTSQEDKATQTLSPASPSQGVMLPCGVTEEP 92
CCG GLR ++ + P VML C EEP
Sbjct: 521 CCGLGLRVRAEGQSCESNPNLGYPCNHVMLSCCEGEEP 558
>gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]
Length = 1231
Score = 28.1 bits (61), Expect = 3.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 55 CCGPGLRPTSQEDKATQTLSPASPSQGVMLPCGVTEEP 92
CCG GLR ++ + P VML C EEP
Sbjct: 521 CCGLGLRVRAEGQSCESNPNLGYPCNHVMLSCCEGEEP 558
>gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo
sapiens]
Length = 890
Score = 28.1 bits (61), Expect = 3.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 105 PLPASFPAVLPIGEQPPEGQWQHQ----AEHQQNQN---RVWWQILLFLHNLALNGEENR 157
PLP P++L G+ PP+ + H AEH++ + R W I NL +G E +
Sbjct: 248 PLPYHLPSILQAGDGPPQMRPYHTIIEIAEHKRKGSLKVRKWRSIF----NLGRSGHETK 303
>gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo
sapiens]
Length = 1101
Score = 28.1 bits (61), Expect = 3.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 105 PLPASFPAVLPIGEQPPEGQWQHQ----AEHQQNQN---RVWWQILLFLHNLALNGEENR 157
PLP P++L G+ PP+ + H AEH++ + R W I NL +G E +
Sbjct: 248 PLPYHLPSILQAGDGPPQMRPYHTIIEIAEHKRKGSLKVRKWRSIF----NLGRSGHETK 303
>gi|38045915 pregnancy-associated plasma protein A preproprotein
[Homo sapiens]
Length = 1627
Score = 27.7 bits (60), Expect = 4.6
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 84 LPCGVTEEPQRLFYGNAGYRLPLPASFPAVL-----------PIGEQPPEGQWQHQAEHQ 132
L CG+ E P+R R P PA+ PA P PP G W+ +
Sbjct: 17 LGCGLAERPRRARRDPRAGRPPRPAAGPATCATRAARGRRASPPPPPPPGGAWEAVRVPR 76
Query: 133 QNQNR 137
+ Q R
Sbjct: 77 RRQQR 81
>gi|169203191 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 27.7 bits (60), Expect = 4.6
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 69 ATQTLSPAS-----PSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVL 114
ATQ L S P G+ L G +E PQRLF N LP+P V+
Sbjct: 26 ATQPLQNHSGAALGPMLGLCLTLGFSESPQRLFSRNT---LPVPDHMAGVM 73
>gi|169203681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 27.7 bits (60), Expect = 4.6
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 69 ATQTLSPAS-----PSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAVL 114
ATQ L S P G+ L G +E PQRLF N LP+P V+
Sbjct: 47 ATQPLQNHSGAALGPMLGLCLTLGFSESPQRLFSRNT---LPVPDHMAGVM 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,402,190
Number of Sequences: 37866
Number of extensions: 441629
Number of successful extensions: 1256
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 45
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.