Guide to the Human Genome
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Name: LOC653924 Sequence: fasta or formatted (224aa) NCBI GI: 239741682
Description:

PREDICTED: hypothetical protein LOC653924

Not currently referenced in the text

Other entries for this name:
alt prot {250aa} PREDICTED: hypothetical protein LOC653924
alt prot {224aa} PREDICTED: similar to hCG1732629
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         16           3
 C cysteine            2.7          6           1
 D aspartate           6.2         14           2
 E glutamate           4.9         11           2
 F phenylalanine       6.2         14           2
 G glycine             5.4         12           1
 H histidine           1.3          3           1
 I isoleucine          3.1          7           1
 K lysine              3.1          7           1
 L leucine            17.0         38           4
 M methionine          0.9          2           1
 N asparagine          0.9          2           1
 P proline             8.0         18           4
 Q glutamine          10.3         23           2
 R arginine            6.7         15           2
 S serine              6.7         15           1
 T threonine           4.0          9           1
 V valine              2.2          5           1
 W tryptophan          1.8          4           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC653924 
LOC653924             0.993   PREDICTED: similar to hCG1732629 
LOC653924             0.959   PREDICTED: hypothetical protein LOC653924 
GPAT2                 0.853   glycerol-3-phosphate acyltransferase 2, mitochondri...
GPAM                  0.118   mitochondrial glycerol 3-phosphate acyltransferase ...
BMF                   0.021   Bcl2 modifying factor isoform bmf-2 
FAM63A                0.012   hypothetical protein LOC55793 isoform 2 
FAM63A                0.012   hypothetical protein LOC55793 isoform 4 
FAM63A                0.012   hypothetical protein LOC55793 isoform 3 
FAM63A                0.012   hypothetical protein LOC55793 isoform 1 
FAM63A                0.012   hypothetical protein LOC55793 isoform 2 
GPR22                 0.012   G protein-coupled receptor 22 
KDM3B                 0.009   jumonji domain containing 1B 
ARHGEF18              0.007   Rho/Rac guanine nucleotide exchange factor 18 isofo...
FBXW2                 0.007   F-box and WD repeat domain containing 2 
C1orf175              0.007   hypothetical protein LOC374977 
TBRG4                 0.007   cell cycle progression 2 protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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