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Search of human proteins with 51477704
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51477704 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1 [Homo sapiens]
(470 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21264353 SWI/SNF related, matrix associated, actin dependent ... 947 0.0
gi|51477704 SWI/SNF related, matrix associated, actin dependent ... 947 0.0
gi|51477702 SWI/SNF related, matrix associated, actin dependent ... 920 0.0
gi|133908629 SWI/SNF-related matrix-associated actin-dependent r... 701 0.0
gi|148536862 SWI/SNF-related matrix-associated actin-dependent r... 672 0.0
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 670 0.0
gi|133908631 SWI/SNF-related matrix-associated actin-dependent r... 619 e-177
gi|146134388 YLP motif containing 1 [Homo sapiens] 43 5e-04
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 43 7e-04
gi|47132519 Ras association and pleckstrin homology domains 1 is... 41 0.002
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 40 0.003
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 40 0.003
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 40 0.006
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 40 0.006
gi|7706501 WW domain binding protein 11 [Homo sapiens] 40 0.006
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 39 0.008
gi|150418009 transforming, acidic coiled-coil containing protein... 39 0.010
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 39 0.010
gi|33286446 opioid growth factor receptor [Homo sapiens] 39 0.013
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 39 0.013
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.013
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens] 39 0.013
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 38 0.017
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 38 0.017
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 38 0.017
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 38 0.017
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 38 0.023
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 38 0.023
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.023
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 38 0.023
>gi|21264353 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 947 bits (2449), Expect = 0.0
Identities = 470/470 (100%), Positives = 470/470 (100%)
Query: 1 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
Sbjct: 1 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
Query: 61 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD 120
PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
Sbjct: 61 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD 120
Query: 121 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD 180
QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
Sbjct: 121 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD 180
Query: 181 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL 240
PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
Sbjct: 181 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL 240
Query: 241 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ 300
LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
Sbjct: 241 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ 300
Query: 301 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS 360
IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
Sbjct: 301 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS 360
Query: 361 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV 420
SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
Sbjct: 361 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV 420
Query: 421 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
Sbjct: 421 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
>gi|51477704 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 947 bits (2449), Expect = 0.0
Identities = 470/470 (100%), Positives = 470/470 (100%)
Query: 1 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA
Sbjct: 1 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
Query: 61 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD 120
PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD
Sbjct: 61 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD 120
Query: 121 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD 180
QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD
Sbjct: 121 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDD 180
Query: 181 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL 240
PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL
Sbjct: 181 PSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLL 240
Query: 241 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ 300
LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ
Sbjct: 241 LMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQ 300
Query: 301 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS 360
IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS
Sbjct: 301 IFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMS 360
Query: 361 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV 420
SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV
Sbjct: 361 SFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKV 420
Query: 421 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
Sbjct: 421 MTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
>gi|51477702 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 2
[Homo sapiens]
Length = 483
Score = 920 bits (2377), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 14 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 73
RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ
Sbjct: 27 RPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQ 86
Query: 74 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 133
PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA
Sbjct: 87 PVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEA 146
Query: 134 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK 193
LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK
Sbjct: 147 LKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFK 206
Query: 194 SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD 253
SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD
Sbjct: 207 SLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLD 266
Query: 254 PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP 313
PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP
Sbjct: 267 PRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIP 326
Query: 314 QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS 373
QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS
Sbjct: 327 QRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEIS 386
Query: 374 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 433
ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR
Sbjct: 387 ALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERR 446
Query: 434 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
Sbjct: 447 AEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 483
>gi|133908629 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform a [Homo sapiens]
Length = 515
Score = 701 bits (1809), Expect = 0.0
Identities = 351/475 (73%), Positives = 408/475 (85%), Gaps = 20/475 (4%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62
PG +P RPGM G+RM QG MGPPG Y G+P+VRPGLA +GM+ +RKR AP
Sbjct: 54 PGAAYP-----RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP- 105
Query: 63 PGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 122
Q Q Q Q V R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQT
Sbjct: 106 --QQIQQVQQQAVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 160
Query: 123 IMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS 182
IMRKR+DIQEALKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D +
Sbjct: 161 IMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSA 220
Query: 183 -------KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSV 235
KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++V
Sbjct: 221 LSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV 280
Query: 236 RCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGD 295
RCT+LLMLDYQPPQFKLDPRLARLLG+HTQ+R I+QALWQY+KT++LQD H++E++ D
Sbjct: 281 RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICD 340
Query: 296 KYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPL 355
KY QQIF+ R+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ L
Sbjct: 341 KYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTL 400
Query: 356 KGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQS 415
K QM+SFLLSTA+QQEI+ LD+KIHETIE+INQLK QR+FMLSF+RDP+G++ D L+SQ
Sbjct: 401 KTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQC 460
Query: 416 RDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
RDLK MTDV GNPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 461 RDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 515
>gi|148536862 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 2 [Homo sapiens]
Length = 510
Score = 672 bits (1734), Expect = 0.0
Identities = 338/482 (70%), Positives = 393/482 (81%), Gaps = 25/482 (5%)
Query: 3 PGLQHP-PTVVQRPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRAA 60
P L+ P P QRPGM G RMP G +GPP GSP+ + +RPG+ P M+P RKR
Sbjct: 40 PALRGPGPAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLL 99
Query: 61 PPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLD 120
P Q P PA+ R KRRKMADK+LPQRIRELVPESQAYMDLLAFERKLD
Sbjct: 100 VPQAQ----------PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLD 149
Query: 121 QTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IAS 168
QTI RKR++IQEA+K+P+ QKRKLR+YISNTF+P+K + DS G+ +AS
Sbjct: 150 QTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVAS 208
Query: 169 WELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVK 228
WELRVEGKLLDDPSKQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVK
Sbjct: 209 WELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVK 268
Query: 229 RPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHD 288
RPGDL+V+CTLLLMLD+QPPQ+KLDPRLARLLG+HTQ+R+AI+QALW Y+K N+LQD H+
Sbjct: 269 RPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHE 328
Query: 289 KEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDID 348
+EYIN ++YF+QIF C RL+FSEIP +L LL PDPIVINHVISVDP+DQKKTACYDID
Sbjct: 329 REYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDID 388
Query: 349 VEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQ 408
VEV++PLK QMS+FL ST NQQEI++LD KIHETIESINQLK QRDFMLSFS DP+ ++Q
Sbjct: 389 VEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQ 448
Query: 409 DLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVR 468
+ LRSQ RDLK++TDV GNPEEERRA FYHQPW+QEAV R+ + K+QQRRQELEQ L +R
Sbjct: 449 EWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIR 508
Query: 469 NT 470
T
Sbjct: 509 LT 510
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 670 bits (1728), Expect = 0.0
Identities = 335/476 (70%), Positives = 389/476 (81%), Gaps = 24/476 (5%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPP-GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQS 66
P QRPGM G RMP G +GPP GSP+ + +RPG+ P M+P RKR P Q
Sbjct: 67 PAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQAQ- 125
Query: 67 QAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRK 126
P PA+ R KRRKMADK+LPQRIRELVPESQAYMDLLAFERKLDQTI RK
Sbjct: 126 ---------PPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARK 176
Query: 127 RVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGS------------IASWELRVE 174
R++IQEA+K+P+ QKRKLR+YISNTF+P+K + DS G+ +ASWELRVE
Sbjct: 177 RMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRVE 235
Query: 175 GKLLDDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLS 234
GKLLDDPSKQKRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGDL+
Sbjct: 236 GKLLDDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLN 295
Query: 235 VRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYING 294
V+CTLLLMLD+QPPQ+KLDPRLARLLG+HTQ+R+AI+QALW Y+K N+LQD H++EYIN
Sbjct: 296 VKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINC 355
Query: 295 DKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEP 354
++YF+QIF C RL+FSEIP +L LL PDPIVINHVISVDP+DQKKTACYDIDVEV++P
Sbjct: 356 NRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDP 415
Query: 355 LKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQ 414
LK QMS+FL ST NQQEI++LD KIHETIESINQLK QRDFMLSFS DP+ ++Q+ LRSQ
Sbjct: 416 LKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQ 475
Query: 415 SRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
RDLK++TDV GNPEEERRA FYHQPW+QEAV R+ + K+QQRRQELEQ L +R T
Sbjct: 476 RRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT 531
>gi|133908631 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform b [Homo sapiens]
Length = 474
Score = 619 bits (1596), Expect = e-177
Identities = 321/475 (67%), Positives = 371/475 (78%), Gaps = 61/475 (12%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62
PG +P RPGM G+RM QG MGPPG Y G+P+VRPGLA +GM+ +RKR AP
Sbjct: 54 PGAAYP-----RPGMLPGSRMTPQGPSMGPPG--YGGNPSVRPGLAQSGMDQSRKRPAP- 105
Query: 63 PGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 122
Q Q Q Q V R+ +AK++KMADKILPQRIRELVPESQAYMDLLAFERKLDQT
Sbjct: 106 --QQIQQVQQQAVQN---RNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT 160
Query: 123 IMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPS 182
IMRKR+DIQEALKRP+KQKRKLR++ISNTFNPAK DAED +G++ASWELRVEG+LL+D +
Sbjct: 161 IMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSA 220
Query: 183 -------KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSV 235
KQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD++V
Sbjct: 221 LSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV 280
Query: 236 RCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGD 295
RCT+LLMLDYQPPQFKLDPRLARLLG+HTQ+R I+QALWQY+KT++LQD H++E++ D
Sbjct: 281 RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICD 340
Query: 296 KYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPL 355
KY QQIF+ R+KFSEIPQRL ALL+PP+PI+INHVISVDP+DQKKTACYDIDVEV++ L
Sbjct: 341 KYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTL 400
Query: 356 KGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQS 415
K QM+SFLLSTA+QQEI+ LD+
Sbjct: 401 KTQMNSFLLSTASQQEIATLDN-------------------------------------- 422
Query: 416 RDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT 470
K MTDV GNPEEERRAEFY QPW+QEAV RYFY K+QQRRQELEQ+L +RNT
Sbjct: 423 ---KTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT 474
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 43.1 bits (100), Expect = 5e-04
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62
P Q PP + P MP P P+ PP P P PG+ P M P+ + PP
Sbjct: 522 PYSQMPPPL---PTMPPPVLPPSLPPPVMPPALPATVPP---PGMPPPVMPPSLPTSVPP 575
Query: 63 PGQSQAQSQGQPVPTAPARSRSA 85
PG + S P P P S S+
Sbjct: 576 PGMPPSLSSAGPPPVLPPPSLSS 598
Score = 39.3 bits (90), Expect = 0.008
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 1 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPG-SPYMGSPAVRPGLAPAGMEPARKRA 59
M P L P V P +P P A + PPG P + P++ + P GM P+ A
Sbjct: 526 MPPPLPTMPPPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPSLPTSVPPPGMPPSLSSA 585
Query: 60 APPPG-QSQAQSQGQPVPTAPARSRSA 85
PPP + S P P P S S+
Sbjct: 586 GPPPVLPPPSLSSAGPPPVLPPPSLSS 612
Score = 33.5 bits (75), Expect = 0.43
Identities = 33/115 (28%), Positives = 40/115 (34%), Gaps = 21/115 (18%)
Query: 3 PGLQHP------PTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRP-----GLAPAG 51
PG+ P PT V PGMP + PP G P V P AP
Sbjct: 558 PGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPP 617
Query: 52 MEPARKRAA-------PPPGQSQA---QSQGQPVPTAPARSRSAKRRKMADKILP 96
+ P ++ PPPG Q Q PVP A + S K +LP
Sbjct: 618 VMPLPPLSSATPPPGIPPPGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRPALLP 672
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 5 LQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPG-LAPAGMEPARKRAAPPP 63
L+ PP + P +P G+ MP P YM P P P +P A P P
Sbjct: 143 LESPP---ESPPVPPGSYMP--------PSQSYMPPPQPPPSYYPPTSSQPYLPPAQPSP 191
Query: 64 GQS-QAQSQGQPVPTAPARSRSAK 86
QS +QS P P+ + S S++
Sbjct: 192 SQSPPSQSYLAPTPSYSSSSSSSQ 215
Score = 29.6 bits (65), Expect = 6.2
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 30 MGPPGSPY---------MGSPAVRPGLAPAGMEPARKRAAPPPG 64
M PP PY M P + P L P M PA PPPG
Sbjct: 516 MPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPATVPPPG 559
Score = 29.3 bits (64), Expect = 8.1
Identities = 25/91 (27%), Positives = 30/91 (32%), Gaps = 16/91 (17%)
Query: 8 PPTVVQRPGMPSGARMPHQGAP--MGPPGSPYMGSPAVR--------------PGLAPAG 51
PP + P MP G Q P M PP P + + PGL P
Sbjct: 83 PPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPME 142
Query: 52 MEPARKRAAPPPGQSQAQSQGQPVPTAPARS 82
+E + PPG SQ P P S
Sbjct: 143 LESPPESPPVPPGSYMPPSQSYMPPPQPPPS 173
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 42.7 bits (99), Expect = 7e-04
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL---------APAGME 53
PG+ P + PGMP G P + P GPPGS G P +R PAG +
Sbjct: 1020 PGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGS--RGPPGMRGAKGRRGPRGPDGPAGEQ 1077
Query: 54 PARKRAAPPPGQSQAQSQGQ 73
+R PP Q + GQ
Sbjct: 1078 GSRGLKGPPGPQGRPGRPGQ 1097
Score = 33.1 bits (74), Expect = 0.56
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 4 GLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYM-GSPAVR-----PGLAPAGMEPARK 57
GL PP + PG+P GAR P P GP G+P + G P + PGL+P K
Sbjct: 634 GLPGPPGLPGLPGIP-GARGPR--GPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAK 690
Query: 58 RAAPPPGQSQAQSQGQPVP 76
PG S G P P
Sbjct: 691 GDMGLPGLS-----GNPGP 704
Score = 32.7 bits (73), Expect = 0.73
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 4 GLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYM----GSPAVRPGLAPAGMEPARKRA 59
G + PP V PG+P A M P+G PG + G P + P G + +
Sbjct: 1147 GPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDR 1206
Query: 60 APPPGQSQAQSQGQ 73
P + +GQ
Sbjct: 1207 GDPGPDGEHGEKGQ 1220
Score = 29.3 bits (64), Expect = 8.1
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 16 GMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 74
G P A +P GPPG + G + L P G R P Q + S+GQP
Sbjct: 1475 GNPGVAGLP---GAQGPPG--FKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQP 1528
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 41.2 bits (95), Expect = 0.002
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 25 HQGAPMGPPGSPYMGSPAVRPGLA--PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPA 80
H GA PP P M S +V+P + P G+ P PPP A +Q +P P AP+
Sbjct: 679 HSGALFKPPTPPVMQSQSVKPQILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPS 736
Score = 35.4 bits (80), Expect = 0.11
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 6 QHPPTVVQRPG-MPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPG 64
Q PP V +P PS +P P PP S + P P PA P A+P P
Sbjct: 893 QSPPAVKAKPKWQPSSIPVPSPDFPPPPPESSLVFPPPP-PSPVPAPPPPPPPTASPTPD 951
Query: 65 QSQAQSQ---------GQPVPTAPARSRSAKRRKMADKILPQR 98
+S + + G+ P P R+ S K A+ P+R
Sbjct: 952 KSGSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSGAEHPEPKR 994
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 40.4 bits (93), Expect = 0.003
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPPGSP--YMGSPAVRPGLAPAGMEPARKRAAPPPGQ 65
PP +PG PS P+ GP SP ++ SP+ +P +P + + P PG
Sbjct: 451 PPQPSPQPGQPSS--QPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGP 508
Query: 66 SQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFE-RKLDQTIM 124
V +PA S A+ ++ DK L Q + + P + + E RK D + M
Sbjct: 509 LNTPVNPSSV-MSPAGSSQAEEQQYLDK-LKQLSKYIEPLRRMINKIDKNEDRKKDLSKM 566
Query: 125 RKRVDI--QEALKRPMKQKRKLRLYISNTFN 153
+ +DI + + P+K +K + + N
Sbjct: 567 KSLLDILTDPSKRCPLKTLQKCEIALEKLKN 597
Score = 30.8 bits (68), Expect = 2.8
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 1 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
+ PG+Q + + GM AR P A P S P R +A ++
Sbjct: 379 VAPGVQMITEALAQGGMHIRARFPPTTAVSAIPSSSI---PLGRQPMAQVSQSSLPMLSS 435
Query: 61 PPPGQSQAQSQGQPVPTAPA 80
P PGQ Q P P P+
Sbjct: 436 PSPGQQVQTPQSMPPPPQPS 455
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 40.4 bits (93), Expect = 0.003
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPPGSP--YMGSPAVRPGLAPAGMEPARKRAAPPPGQ 65
PP +PG PS P+ GP SP ++ SP+ +P +P + + P PG
Sbjct: 411 PPQPSPQPGQPSS--QPNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPGP 468
Query: 66 SQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFE-RKLDQTIM 124
V +PA S A+ ++ DK L Q + + P + + E RK D + M
Sbjct: 469 LNTPVNPSSV-MSPAGSSQAEEQQYLDK-LKQLSKYIEPLRRMINKIDKNEDRKKDLSKM 526
Query: 125 RKRVDI--QEALKRPMKQKRKLRLYISNTFN 153
+ +DI + + P+K +K + + N
Sbjct: 527 KSLLDILTDPSKRCPLKTLQKCEIALEKLKN 557
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 39.7 bits (91), Expect = 0.006
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 29 PMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQS-QGQPVPTAPARSRS 84
P GPPGSP P +PG+A P ++ A P G+ Q G P P P S+S
Sbjct: 548 PEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPPGSQS 604
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 39.7 bits (91), Expect = 0.006
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 18 PSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVP- 76
PS PH+ P G PA PG A E + K+ APPP QA PVP
Sbjct: 608 PSPTPSPHR------PSIRTKGEPAPPPGKAG---EKSVKKPAPPPAPPQATKTTAPVPE 658
Query: 77 -TAPARSRSAKRRKMADKILPQR 98
T P R A+R++ + P+R
Sbjct: 659 PTKPGDPREARRKERPARTPPRR 681
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 39.7 bits (91), Expect = 0.006
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 3 PGLQHPPTVVQRPGMPSGARM-PHQGAPMG-PPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
PGL+ P + PG P G P G P G PPG P G P P AP G+ P R
Sbjct: 448 PGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMM 507
Query: 61 PPP 63
PP
Sbjct: 508 RPP 510
Score = 38.1 bits (87), Expect = 0.017
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMG-PPGSPYM----GSPAVR---PGLAPAGMEP 54
P + PP + P P P G P G PPG+P G P +R P L P G P
Sbjct: 405 PPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPP 464
Query: 55 ARKRAAPPPGQSQAQSQGQPVPTAPAR 81
R PPPG G P P R
Sbjct: 465 GRP-PGPPPGPPPGLPPGPPPRGPPPR 490
Score = 37.7 bits (86), Expect = 0.023
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 8 PPTVVQRPGMPSGARM-PHQGAPMGPPGSPYMGSPAVRPG----LAPAGME------PAR 56
PP+ +Q P MP + P P+ PPG P P PG L P GM P
Sbjct: 398 PPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRL 457
Query: 57 KRAAPPPGQSQAQSQGQPVPTAP 79
PPPG+ G P P
Sbjct: 458 LPPGPPPGRPPGPPPGPPPGLPP 480
Score = 32.7 bits (73), Expect = 0.73
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 9 PTVVQRPGMPSGAR--MPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQS 66
P ++ PGMP G R +P P PPG P P PG P G+ P PPP
Sbjct: 439 PPFLRPPGMP-GLRGPLPRLLPPGPPPGRP----PGPPPG-PPPGLPPGPPPRGPPPRLP 492
Query: 67 QAQSQGQPVP 76
G P P
Sbjct: 493 PPAPPGIPPP 502
Score = 31.2 bits (69), Expect = 2.1
Identities = 30/96 (31%), Positives = 33/96 (34%), Gaps = 20/96 (20%)
Query: 3 PGLQHPPTVVQRP-----GMPSGARMPHQGAP--MGPPGSPYM----------GSPAVRP 45
P L PP RP G+P G P GAP + PPG P + G P RP
Sbjct: 411 PPLGPPPAPPLRPPGPPTGLPPG---PPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRP 467
Query: 46 GLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPAR 81
P G P PP G P P R
Sbjct: 468 PGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPR 503
Score = 29.3 bits (64), Expect = 8.1
Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 3 PGLQHPPTVVQRPGMPSGA-------RMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPA 55
PG P PG+P G R+P P PP P M P + P L PA
Sbjct: 464 PGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLF 523
Query: 56 RKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRK 89
P PG A P A S + +K
Sbjct: 524 PPAPLPNPGVLSAPPNLIQRPKADDTSAATIEKK 557
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 39.3 bits (90), Expect = 0.008
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL-APAGMEPARKRAAP 61
PG Q P + PG+P A +P + P GP G G P PG+ G +
Sbjct: 348 PGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGV 407
Query: 62 PPGQSQAQSQGQPVPTAP 79
P + + G P PT P
Sbjct: 408 PGERGLPGAHGPPGPTGP 425
Score = 37.7 bits (86), Expect = 0.023
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 4 GLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGL-APAGMEPARKRAAP- 61
G + P RPG P A Q +G PG P + P+ PGL PAG P + P
Sbjct: 424 GPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAG--PIGPQGLPG 481
Query: 62 ---------PPGQSQAQSQGQPVPTAP 79
PPG+ +A G PT P
Sbjct: 482 LKGEPGLPGPPGEGRAGEPGTAGPTGP 508
Score = 35.0 bits (79), Expect = 0.15
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAP--MGPPGSPYM-GSPAVR-----------PGL- 47
PGL P PG + G P +GPPG P + G P +R PGL
Sbjct: 105 PGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLP 164
Query: 48 APAGM----EPARKRAAPPPG-QSQAQSQGQPVP 76
P+G+ +P + PPG Q + QG+P P
Sbjct: 165 GPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGP 198
Score = 31.6 bits (70), Expect = 1.6
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 12 VQRPGMPSGARMPHQGAPMGPPGSPYMGSPA--VRPGLAPAGMEPARKRAAPPPG 64
V +PG+P P QG GPPG P PA +PGL P K + PPG
Sbjct: 210 VGQPGLPGA---PGQGGAPGPPGLP---GPAGLGKPGLDGLPGAPGDKGESGPPG 258
Score = 31.2 bits (69), Expect = 2.1
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62
PGLQ P + G+P P G P GPPG G P P G+ P P
Sbjct: 465 PGLQGPAGPIGPQGLPGLKGEP--GLP-GPPGEGRAGEPGTAGPTGPPGV-PGSPGITGP 520
Query: 63 PG 64
PG
Sbjct: 521 PG 522
Score = 30.8 bits (68), Expect = 2.8
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 74
PG P G R P P G PG P MG P + PAG PPG S+ G P
Sbjct: 82 PGKP-GPRGPP--GPPGFPGKPGMGKPGLHGQPGPAG----------PPGFSRMGKAGPP 128
Score = 30.0 bits (66), Expect = 4.7
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 4 GLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSP-YMGSPAVRPGLAPAGMEPAR-KRAAP 61
GL+ PP PG PSG +P + G PG P + G P + P G +
Sbjct: 153 GLRGPPGPPGLPG-PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVG 211
Query: 62 PPGQSQAQSQG 72
PG A QG
Sbjct: 212 QPGLPGAPGQG 222
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAP----PPGQSQAQS 70
PG+P P P GPPG +G P P G P+ + P PPG
Sbjct: 257 PGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQG--PSGAKGEPGTRGPPGLIGPTG 314
Query: 71 QGQPVPTAPARSR 83
G P P R
Sbjct: 315 YGMPGLPGPKGDR 327
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 38.9 bits (89), Expect = 0.010
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 9 PTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEP--ARKRAAPPPGQS 66
P V + P GAR P PP S P+ A E A AAP G
Sbjct: 75 PEVTEPRKDPQGARGPEGSLLPSPPPSQEREHPSSSMPFAECPPEGCLASPAAAPEDGPQ 134
Query: 67 QAQSQGQPVPTAPA---------RSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFER 117
+ +P P AP R S +++A +P RE P+ + +F
Sbjct: 135 TQSPRREPAPNAPGDIAAAFPAERDSSTPYQEIA--AVPSAGRERQPKEEGQKSSFSFSS 192
Query: 118 KLDQTIMRKRVDIQEALKRPM 138
+DQ+ V ++E +K P+
Sbjct: 193 GIDQSPGMSPVPLREPMKAPL 213
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 38.9 bits (89), Expect = 0.010
Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 1 MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
+ PG+ PP + PGMP G MP G M PPG G P + PG+ P P +
Sbjct: 170 LMPGM--PPVM---PGMPPGM-MPMGG--MMPPGP---GIPPLMPGMPPGMPPPVPRPGI 218
Query: 61 PPPGQSQAQS-----QGQPVPTA 78
PP Q+QA S P PTA
Sbjct: 219 PPMTQAQAVSAPGILNRPPAPTA 241
Score = 33.5 bits (75), Expect = 0.43
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 17/66 (25%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPPGSPYM---------GSPAVRPGLAPAGMEPARKR 58
PP + +PG+P P GAP PPG P + G P V PG+ P GM P
Sbjct: 140 PP--MAQPGLP-----PVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGM-PPGMMPMGGM 191
Query: 59 AAPPPG 64
P PG
Sbjct: 192 MPPGPG 197
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 38.5 bits (88), Expect = 0.013
Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPG---LAPAGMEPARK-------RAAPPPG 64
PG PS P +P GP G SP+ PG PAG EPA R A P G
Sbjct: 515 PGSPSETPGP---SPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAG 571
Query: 65 QSQAQSQGQ---PVPTAPARSRSAK 86
A+S + P P P R A+
Sbjct: 572 DEPAESPSETPGPSPAGPTRDEPAE 596
Score = 36.2 bits (82), Expect = 0.066
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 14 RPGMPSG---ARMPHQG---APMGPPGSPYMGSPAVRPG---LAPAGMEPARK------- 57
RP P+G A P + +P GP SP+ PG PAG EPA
Sbjct: 565 RPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP 624
Query: 58 RAAPPPGQSQAQSQGQ---PVPTAPARSRSAKRRKMAD 92
R A P G A+S + P P P R AK + A+
Sbjct: 625 RPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEAAE 662
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 38.5 bits (88), Expect = 0.013
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 11 VVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRA--APPPGQSQA 68
+ +R G P G P PPG P P PGL P+G+ A A PPP
Sbjct: 152 IERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLP 211
Query: 69 QSQ-----GQPVPTAPARSRSAKRRKMA 91
+Q G P A AK RK++
Sbjct: 212 AAQGPGGGGAGAPGLAAAIAGAKLRKVS 239
Score = 33.9 bits (76), Expect = 0.33
Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 61/204 (29%)
Query: 3 PGLQHPPTVVQRPGMP-SGARMPHQGAPMGPPGSPYM-------GSPAVRPGLAPAG--- 51
PG PP PG+P SG GA GPP +P + G A PGLA A
Sbjct: 174 PGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLAAAIAGA 233
Query: 52 ------------------------------MEP-----ARKRAAPPPGQS----QAQSQG 72
ME AR+R A G+ ++ +Q
Sbjct: 234 KLRKVSKQEEASGGPTAPKAESGRSGGGGLMEEMNAMLARRRKATQVGEKTPKDESANQE 293
Query: 73 QPVPTAPARSRSAKR-----------RKMADKILPQRIRELVPESQAYMDLLAFERKLDQ 121
+P PA+S S +R K + + + P S Y DL +++L +
Sbjct: 294 EPEARVPAQSESVRRPWEKNSTTLPRMKSSSSVTTSETQPCTPSSSDYSDLQRVKQELLE 353
Query: 122 TIMRKRVDIQEALKRPMKQKRKLR 145
+ ++ ++E + Q+ + R
Sbjct: 354 EVKKELQKVKEEIIEAFVQELRKR 377
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.5 bits (88), Expect = 0.013
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQ 67
P TV+Q P A P AP PP +P +PA P P PA A PPG
Sbjct: 234 PGTVIQTPPFVGAAAPPAPAAP-SPPAAPAPAAPAAAPPPPP----PAPATLARPPGHPA 288
Query: 68 AQSQGQPVPTAPARSRS 84
P PA +++
Sbjct: 289 GPPTAAPAVPPPAAAQN 305
Score = 35.0 bits (79), Expect = 0.15
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 18 PSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPT 77
P+G P G P P G P+ R L PAG P + PPP S PVP
Sbjct: 91 PAGRARPGGGGPQRP------GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSC--APVPA 142
Query: 78 APA 80
A A
Sbjct: 143 AAA 145
Score = 33.1 bits (74), Expect = 0.56
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 5 LQHPPTV-VQRPGMPSGARMPHQGAPMGPPGSPYMGSPA----VRPGLAPAGMEPARKRA 59
+Q PP V P P+ P AP P +P PA RP PAG A
Sbjct: 238 IQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAV 297
Query: 60 APPPGQSQAQSQGQPVPTAPA 80
PP S G APA
Sbjct: 298 PPPAAAQNGGSAGAAPAPAPA 318
Score = 33.1 bits (74), Expect = 0.56
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 8 PPTVVQRPGMPSGARMPHQ--GAPMGPPGSPYMGSPAVRPGLAPAGMEPAR-KRAAPPPG 64
PP Q G A P G P G G P G+ A P P R +AAPP
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA 358
Query: 65 QSQAQS 70
Q+ A S
Sbjct: 359 QTLAAS 364
Score = 32.3 bits (72), Expect = 0.95
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 4 GLQHP-PTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLA--PAGMEPARKRAA 60
G Q P P +RP +P+G P A + PP GS A P A AG EPA A
Sbjct: 101 GPQRPGPPSPRRPLVPAGPAPP--AAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPA 158
Query: 61 PPPGQSQAQSQGQPVP 76
P G + ++ P P
Sbjct: 159 KPAGPAALAARAGPGP 174
Score = 32.3 bits (72), Expect = 0.95
Identities = 29/101 (28%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQ 67
P T+ + PG P+G P AP PP PA AG PA AA P
Sbjct: 277 PATLARPPGHPAG---PPTAAPAVPP-------PAAAQNGGSAGAAPAPAPAAGGPAGVS 326
Query: 68 AQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQA 108
Q APA A+ K + P + L A
Sbjct: 327 GQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPA 367
>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
Length = 232
Score = 38.5 bits (88), Expect = 0.013
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 22 RMPHQGAPMGPPGSP---YMGSPAVRPGLAP-AGMEPARKRAAPPPGQSQAQSQGQPVPT 77
R PH G + PP SP + +P PG A AG APPP S G P P
Sbjct: 21 RAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDPGPAPPP----PASLGSPAPP 76
Query: 78 APARSRSAKRRKMADKILPQRIR--ELVPESQAYMDLLAFERKLDQTIM 124
A + SA +R+ ++++ ELV Y D+ ER T++
Sbjct: 77 KGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLAALTLL 125
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.017
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVR--PGLAP-------AGMEPARKR 58
PP RPG P ++P + P PGSP + + A+ PG A A + P+R
Sbjct: 5 PPPCGPRPG-PRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPP 63
Query: 59 AAPPPGQSQAQSQG 72
AAPPP + S G
Sbjct: 64 AAPPPRREVLSSPG 77
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.017
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVR--PGLAP-------AGMEPARKR 58
PP RPG P ++P + P PGSP + + A+ PG A A + P+R
Sbjct: 5 PPPCGPRPG-PRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPP 63
Query: 59 AAPPPGQSQAQSQG 72
AAPPP + S G
Sbjct: 64 AAPPPRREVLSSPG 77
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.017
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVR--PGLAP-------AGMEPARKR 58
PP RPG P ++P + P PGSP + + A+ PG A A + P+R
Sbjct: 5 PPPCGPRPG-PRSHKLPRECFPASGPGSPVLCAAALSGGPGRAAGSAIGRGAHLSPSRPP 63
Query: 59 AAPPPGQSQAQSQG 72
AAPPP + S G
Sbjct: 64 AAPPPRREVLSSPG 77
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 38.1 bits (87), Expect = 0.017
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 6 QHPPTVVQRPGMPSGARMPHQG----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAP 61
Q PP PG P G P QG +P PPG P P + G P G P +
Sbjct: 130 QGPPP----PGKPQGP--PPQGDKSRSPRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQG 181
Query: 62 PPGQSQAQSQGQPVPTAP 79
PP Q + QG P P P
Sbjct: 182 PPPQGGKKPQGPPPPGKP 199
Score = 37.7 bits (86), Expect = 0.023
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 6 QHPPTVVQRPGMPSGARMPHQG----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAP 61
Q PP PG P G P QG +P PPG P P + G P G P +
Sbjct: 69 QGPPP----PGKPQGP--PPQGDKSRSPRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQG 120
Query: 62 PPGQSQAQSQGQPVPTAP 79
PP Q + QG P P P
Sbjct: 121 PPPQGGNRPQGPPPPGKP 138
Score = 35.0 bits (79), Expect = 0.15
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPPGQSQAQSQ 71
PG P G P GPP P G P P G P G P K PPP +++S
Sbjct: 155 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS 212
Query: 72 GQP 74
P
Sbjct: 213 QSP 215
Score = 34.3 bits (77), Expect = 0.25
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPPGQSQAQSQ 71
PG P G P GPP P G P P G P G P K PPP +++S
Sbjct: 94 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSP 151
Query: 72 GQP 74
P
Sbjct: 152 RSP 154
Score = 32.3 bits (72), Expect = 0.95
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 15 PGMPSGARMPHQGA--PMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQG 72
PG P G P QG P GPP P + + + P K PPP Q Q QG
Sbjct: 176 PGKPQGP--PPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPP-QGGNQPQG 232
Query: 73 QPVP 76
P P
Sbjct: 233 PPPP 236
Score = 32.3 bits (72), Expect = 0.95
Identities = 26/88 (29%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 6 QHPPTVVQRPGMPSGARMPH-----QGAPMGPP--------GSPYMGSPAVRPGLAPAGM 52
Q PP Q P P G P G P GPP G P G P P +
Sbjct: 213 QSPPGKPQGPP-PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKS 271
Query: 53 EPARKRAAPPPGQSQAQSQGQPVPTAPA 80
+ AR P G Q + P PA
Sbjct: 272 QSARSPPGKPQGPPQQEGNNPQGPPPPA 299
Score = 32.0 bits (71), Expect = 1.2
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 18 PSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 74
P G P QG P PPG P P + G P G P K PPP +++S P
Sbjct: 41 PQGGNKP-QGPPP-PPGKPQ--GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP 93
Score = 31.6 bits (70), Expect = 1.6
Identities = 28/87 (32%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 8 PPTVVQRPGMPSGARMPHQGAPMG-PPGSPYMG-------SPAVRP-------GLAPAGM 52
PP Q P P G + P P G P G P G SP +P G P G
Sbjct: 175 PPGKPQGPP-PQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGP 233
Query: 53 EPARKRAAPPPGQSQAQSQGQPVPTAP 79
P + PP Q + QG P P P
Sbjct: 234 PPPPGKPQGPPPQGGNKPQGPPPPGKP 260
Score = 31.2 bits (69), Expect = 2.1
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 74
PG P G P GPP P + + + P K PPP Q Q QG P
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP-QGGNQPQGPP 112
Query: 75 VP 76
P
Sbjct: 113 PP 114
Score = 31.2 bits (69), Expect = 2.1
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQP 74
PG P G P GPP P + + + P K PPP Q Q QG P
Sbjct: 115 PGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP-QGGNQPQGPP 173
Query: 75 VP 76
P
Sbjct: 174 PP 175
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 37.7 bits (86), Expect = 0.023
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 14/77 (18%)
Query: 20 GARMPHQGAPMGPPG--SPYMGSPAVR----PGLAPAGMEPARKRAAPPPGQS-QAQSQG 72
GAR Q +P+GP G SP GSP ++ PG+AP +P AP P + QA
Sbjct: 781 GARSSSQRSPVGPAGVRSPRPGSPQMQASPSPGIAP---KPKTPPTAPEPAAAVQAPLPR 837
Query: 73 QPVP----TAPARSRSA 85
+P+ TAPA+ R+A
Sbjct: 838 EPLALAGRTAPAQPRAA 854
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 37.7 bits (86), Expect = 0.023
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 3 PGLQHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPP 62
P Q P PG H+G P+ PG P + APA E A AA
Sbjct: 1369 PAEQTEPPPSGTPGPDDARDDDHEGGPVEGPG-PLPSPASATATAAPAAPEDAATSAAAA 1427
Query: 63 PGQSQAQSQGQPVPTAPARSRSAKR 87
PG+ A P P+ + S + +R
Sbjct: 1428 PGEGPAAPSSAPPPSNSSSSSAPRR 1452
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.023
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 16 GMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPV 75
G SGA G+ PP P SP VR A A P + P +S SQG+
Sbjct: 318 GQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG 377
Query: 76 PTAPARSRSAKRRK 89
A R +RR+
Sbjct: 378 RAAGGAGRRRRRRR 391
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 37.7 bits (86), Expect = 0.023
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 6 QHPPTVVQRPGMPSGARMPHQG----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAAP 61
Q PP PG P G P QG +P PPG P P + G P G P +
Sbjct: 90 QGPPP----PGKPQGP--PPQGDKSRSPRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQG 141
Query: 62 PPGQSQAQSQGQPVPTAP 79
PP Q + QG P P P
Sbjct: 142 PPPQGGNKPQGPPPPGKP 159
Score = 35.8 bits (81), Expect = 0.086
Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 16 GMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPPGQSQAQSQG 72
G P GA P GPP P G P P G P G P + PP Q + QG
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPP--GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 91
Query: 73 QPVPTAP 79
P P P
Sbjct: 92 PPPPGKP 98
Score = 35.4 bits (80), Expect = 0.11
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPP-GQSQAQS 70
PG P G P GPP P G P P G P G P K PPP G +++QS
Sbjct: 177 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQS 234
Query: 71 QGQP 74
P
Sbjct: 235 ARSP 238
Score = 35.4 bits (80), Expect = 0.11
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 6 QHPPTVVQRPGMPSGARMPHQG-----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
Q PP PG P G P QG + PPG P P + G P G P +
Sbjct: 275 QGPPP----PGKPQGP--PPQGGSKSRSSRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQ 326
Query: 61 PPPGQSQAQSQGQPVPTAP--------ARSRSAK 86
PP Q + QG P P P ++SRSA+
Sbjct: 327 GPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSAR 360
Score = 35.0 bits (79), Expect = 0.15
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 6 QHPPTVVQRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPP 62
Q PP+ PG P G P GPP P G P P G P G P K PP
Sbjct: 48 QGPPSP---PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPP 102
Query: 63 PGQSQAQSQGQP 74
P +++S P
Sbjct: 103 PQGDKSRSPRSP 114
Score = 34.7 bits (78), Expect = 0.19
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPP-GQSQAQS 70
PG P G P GPP P G P P G P G P K PPP G S+++S
Sbjct: 239 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 296
Query: 71 QGQP 74
P
Sbjct: 297 SRSP 300
Score = 34.3 bits (77), Expect = 0.25
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPP-GQSQAQS 70
PG P G P GPP P G P P G P G P K PPP G ++++S
Sbjct: 115 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRS 172
Query: 71 QGQP 74
P
Sbjct: 173 SRSP 176
Score = 34.3 bits (77), Expect = 0.25
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 6 QHPPTVVQRPGMPSGARMPHQG-----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
Q PP PG P G P QG + PPG P P + G P G P +
Sbjct: 151 QGPPP----PGKPQGP--PPQGDNKSRSSRSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQ 202
Query: 61 PPPGQSQAQSQGQPVPTAP 79
PP Q + QG P P P
Sbjct: 203 GPPPQGGNKPQGPPPPGKP 221
Score = 34.3 bits (77), Expect = 0.25
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 6 QHPPTVVQRPGMPSGARMPHQG-----APMGPPGSPYMGSPAVRPGLAPAGMEPARKRAA 60
Q PP PG P G P QG + PPG P P + G P G P +
Sbjct: 213 QGPPP----PGKPQGP--PPQGDNKSQSARSPPGKPQ--GPPPQGGNQPQGPPPPPGKPQ 264
Query: 61 PPPGQSQAQSQGQPVPTAP 79
PP Q + QG P P P
Sbjct: 265 GPPPQGGNKPQGPPPPGKP 283
Score = 34.3 bits (77), Expect = 0.25
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 15 PGMPSGARMPHQGAPMGPPGSPYMGSPAVRP---GLAPAGMEPARKRAAPPP-GQSQAQS 70
PG P G P GPP P G P P G P G P K PPP G S+++S
Sbjct: 301 PGKPQGPPPQGGNQPQGPPPPP--GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 358
Query: 71 QGQP 74
P
Sbjct: 359 ARSP 362
Score = 32.3 bits (72), Expect = 0.95
Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 15 PGMPSGARMPHQGAPMGPP------GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQA 68
PG P G P GPP G P G R +P G K PPP Q
Sbjct: 260 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPG-----KPQGPPP-QGGN 313
Query: 69 QSQGQPVP 76
Q QG P P
Sbjct: 314 QPQGPPPP 321
Score = 32.0 bits (71), Expect = 1.2
Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 15 PGMPSGARMPHQGAPMGPP------GSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQA 68
PG P G P GPP G P G R +P G K PPP Q
Sbjct: 136 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPG-----KPQGPPP-QGGN 189
Query: 69 QSQGQPVP 76
Q QG P P
Sbjct: 190 QPQGPPPP 197
Score = 31.2 bits (69), Expect = 2.1
Identities = 30/91 (32%), Positives = 32/91 (35%), Gaps = 22/91 (24%)
Query: 4 GLQHPPTVVQRPGMPSGARMPH-----QGAPMGPP--------GSPYMGSPAVRPGLAPA 50
G PP Q P P G P G P GPP G P G P G P
Sbjct: 49 GPPSPPGKPQGPP-PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP---QGPPPQ 104
Query: 51 GMEPARKRAAP-----PPGQSQAQSQGQPVP 76
G + R+ P PP Q Q QG P P
Sbjct: 105 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPP 135
Score = 29.3 bits (64), Expect = 8.1
Identities = 28/88 (31%), Positives = 30/88 (34%), Gaps = 23/88 (26%)
Query: 8 PPTVVQRPGMPSGARMPH-----QGAPMGPP--------GSPYMGSPAVRPGLAPAGMEP 54
PP Q P P G P G P GPP G P G P G P G
Sbjct: 300 PPGKPQGPP-PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP---QGPPPQGGSK 355
Query: 55 ARKRAAP------PPGQSQAQSQGQPVP 76
+R +P PP Q QG P P
Sbjct: 356 SRSARSPPGKPQGPPQQEGNNPQGPPPP 383
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,630,904
Number of Sequences: 37866
Number of extensions: 1142642
Number of successful extensions: 11044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 573
Number of HSP's that attempted gapping in prelim test: 7547
Number of HSP's gapped (non-prelim): 3439
length of query: 470
length of database: 18,247,518
effective HSP length: 106
effective length of query: 364
effective length of database: 14,233,722
effective search space: 5181074808
effective search space used: 5181074808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.