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Search of human proteins with 50541967
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo
sapiens]
(306 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo ... 645 0.0
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 393 e-110
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 358 4e-99
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 356 2e-98
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 355 3e-98
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 353 1e-97
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s... 51 1e-06
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 48 9e-06
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 48 9e-06
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 40 0.003
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 38 0.013
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 37 0.017
gi|193788659 cleavage and polyadenylation specific factor 4-like... 37 0.022
gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens] 36 0.049
gi|169201475 PREDICTED: similar to hCG1798126, partial [Homo sap... 36 0.049
gi|169190743 PREDICTED: similar to hCG1798126 [Homo sapiens] 36 0.049
gi|209571555 von Willebrand factor D and EGF domains [Homo sapiens] 32 0.54
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 32 0.54
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 32 0.54
gi|122937388 MAX gene associated [Homo sapiens] 32 0.54
gi|169211819 PREDICTED: keratin associated protein [Homo sapiens] 32 0.70
gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo ... 32 0.70
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap... 32 0.70
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 32 0.92
gi|213385278 TNF receptor-associated factor 3 interacting protei... 31 1.2
gi|20070262 TNF receptor-associated factor 3 interacting protein... 31 1.2
gi|71061468 centromere protein E [Homo sapiens] 31 1.2
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 31 1.2
gi|55770898 Rho GTPase activating protein 25 isoform a [Homo sap... 31 1.2
gi|7661882 Rho GTPase activating protein 25 isoform b [Homo sapi... 31 1.2
>gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo
sapiens]
Length = 306
Score = 645 bits (1663), Expect = 0.0
Identities = 306/306 (100%), Positives = 306/306 (100%)
Query: 1 MRMSSKFPSPPLPIFLPPEPVDLGSITSSSCSLNELDNISHLLRKISADINEIKGMKAAI 60
MRMSSKFPSPPLPIFLPPEPVDLGSITSSSCSLNELDNISHLLRKISADINEIKGMKAAI
Sbjct: 1 MRMSSKFPSPPLPIFLPPEPVDLGSITSSSCSLNELDNISHLLRKISADINEIKGMKAAI 60
Query: 61 LTVEANLFDLNVRVSKNEAKISSLEVKMNEYSTTYECNRQFEDQEEDTESQSRTTDVKII 120
LTVEANLFDLNVRVSKNEAKISSLEVKMNEYSTTYECNRQFEDQEEDTESQSRTTDVKII
Sbjct: 61 LTVEANLFDLNVRVSKNEAKISSLEVKMNEYSTTYECNRQFEDQEEDTESQSRTTDVKII 120
Query: 121 GFLRNVEKGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKN 180
GFLRNVEKGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKN
Sbjct: 121 GFLRNVEKGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKN 180
Query: 181 GDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPV 240
GDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPV
Sbjct: 181 GDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPV 240
Query: 241 APPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWI 300
APPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWI
Sbjct: 241 APPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWI 300
Query: 301 RPQTSE 306
RPQTSE
Sbjct: 301 RPQTSE 306
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 393 bits (1010), Expect = e-110
Identities = 181/185 (97%), Positives = 182/185 (98%), Gaps = 3/185 (1%)
Query: 125 NVEK--GTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGD 182
+VEK GTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGD
Sbjct: 387 SVEKNQGTQQRQLLSRLQIDPVMAETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGD 446
Query: 183 ECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP-VA 241
ECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKP VA
Sbjct: 447 ECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPAVA 506
Query: 242 PPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIR 301
PPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIR
Sbjct: 507 PPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIR 566
Query: 302 PQTSE 306
PQTSE
Sbjct: 567 PQTSE 571
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 358 bits (918), Expect = 4e-99
Identities = 170/211 (80%), Positives = 175/211 (82%), Gaps = 16/211 (7%)
Query: 103 DQEEDT-------ESQSRTTDVKIIGFLRNVEKGTQQRQLLSRLQIDPVMAETLQMSQAE 155
DQEED +Q+ ++ + G L QQ LLSR DP S AE
Sbjct: 534 DQEEDMCFEGMKPVNQTAASNKGLRGLLH-----PQQLHLLSRQLEDP----NGSFSNAE 584
Query: 156 MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD 215
MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD
Sbjct: 585 MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD 644
Query: 216 AKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 275
AKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT
Sbjct: 645 AKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 704
Query: 276 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 306
QCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 705 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 735
Score = 51.6 bits (122), Expect = 9e-07
Identities = 28/31 (90%), Positives = 29/31 (93%), Gaps = 2/31 (6%)
Query: 125 NVEK--GTQQRQLLSRLQIDPVMAETLQMSQ 153
+VEK GTQQRQLLSRLQIDPVMAETLQMSQ
Sbjct: 421 SVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 451
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 356 bits (913), Expect = 2e-98
Identities = 169/211 (80%), Positives = 174/211 (82%), Gaps = 21/211 (9%)
Query: 103 DQEEDT-------ESQSRTTDVKIIGFLRNVEKGTQQRQLLSRLQIDPVMAETLQMSQAE 155
DQEED +Q+ ++ + G L QQ LLSR DP AE
Sbjct: 534 DQEEDMCFEGMKPVNQTAASNKGLRGLLH-----PQQLHLLSRQLEDP---------NAE 579
Query: 156 MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD 215
MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD
Sbjct: 580 MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD 639
Query: 216 AKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 275
AKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT
Sbjct: 640 AKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNT 699
Query: 276 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 306
QCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 700 QCTRPDCTFYHPTINVPPRHALKWIRPQTSE 730
Score = 51.6 bits (122), Expect = 9e-07
Identities = 28/31 (90%), Positives = 29/31 (93%), Gaps = 2/31 (6%)
Query: 125 NVEK--GTQQRQLLSRLQIDPVMAETLQMSQ 153
+VEK GTQQRQLLSRLQIDPVMAETLQMSQ
Sbjct: 421 SVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 451
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 355 bits (911), Expect = 3e-98
Identities = 154/160 (96%), Positives = 159/160 (99%)
Query: 147 ETLQMSQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCL 206
++++ +QAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCL
Sbjct: 420 DSVEKNQAEMSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCL 479
Query: 207 FVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFY 266
FVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFY
Sbjct: 480 FVHPNCKYDAKCTKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFY 539
Query: 267 HPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 306
HPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 540 HPKHCRFNTQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 579
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 353 bits (906), Expect = 1e-97
Identities = 170/212 (80%), Positives = 175/212 (82%), Gaps = 17/212 (8%)
Query: 103 DQEEDT-------ESQSRTTDVKIIGFLRNVEKGTQQRQLLSRLQIDPVMAETLQMSQAE 155
DQEED +Q+ ++ + G L QQ LLSR DP S AE
Sbjct: 534 DQEEDMCFEGMKPVNQTAASNKGLRGLLH-----PQQLHLLSRQLEDP----NGSFSNAE 584
Query: 156 MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD 215
MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD
Sbjct: 585 MSELSVAQKPEKLLERCKYWPACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYD 644
Query: 216 AKCTKPDCPFTHVSRRIPVLSPKP-VAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFN 274
AKCTKPDCPFTHVSRRIPVLSPKP VAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFN
Sbjct: 645 AKCTKPDCPFTHVSRRIPVLSPKPAVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFN 704
Query: 275 TQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 306
TQCTRPDCTFYHPTINVPPRHALKWIRPQTSE
Sbjct: 705 TQCTRPDCTFYHPTINVPPRHALKWIRPQTSE 736
Score = 51.6 bits (122), Expect = 9e-07
Identities = 28/31 (90%), Positives = 29/31 (93%), Gaps = 2/31 (6%)
Query: 125 NVEK--GTQQRQLLSRLQIDPVMAETLQMSQ 153
+VEK GTQQRQLLSRLQIDPVMAETLQMSQ
Sbjct: 421 SVEKNQGTQQRQLLSRLQIDPVMAETLQMSQ 451
>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
sapiens]
Length = 865
Score = 51.2 bits (121), Expect = 1e-06
Identities = 35/141 (24%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 34 NELDNISHLLRKISADINEIKGMKAAILTVEANLFDLNVRVSKNEAKISSLEVKMNEYS- 92
N ++ + +R+I +I +K + +L +E ++ DL+ R+ E +I SLE ++ E+S
Sbjct: 616 NLRSSVINSIREIKEEIGNLKSSHSGVLEIENSVDDLSSRMDILEERIDSLEDQIEEFSK 675
Query: 93 TTYECNRQF--EDQEEDTESQSRTTDVKIIGFLRNVEKGTQQRQLLSRLQIDPVMAETLQ 150
T + +Q ++++ D E +SR+ ++++IG + ++ + ID AE +
Sbjct: 676 DTMQMTKQIISKERQRDIEERSRSCNIRLIGIPEKESYENRAEDIIKEI-IDENFAELKK 734
Query: 151 MSQAEMSELSVAQKPEKLLER 171
S E+ +S + P K+ E+
Sbjct: 735 GSSLEI--VSACRVPSKIDEK 753
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 48.1 bits (113), Expect = 9e-06
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 172 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 229
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHI- 115
Query: 230 RRIPVLSPKPVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCTF 284
P+ P C++ P C +++ C Y C P C F
Sbjct: 116 ------DPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCKF 164
Query: 285 YHPTINVP 292
HP +P
Sbjct: 165 MHPRFELP 172
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 48.1 bits (113), Expect = 9e-06
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 172 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 229
CK+W CK GD+C + H K P C F K +C+ +CPF H+
Sbjct: 68 CKHWLRGLCKKGDQCEFLHEYDMTK-MPECYFYSKF----------GECSNKECPFLHI- 115
Query: 230 RRIPVLSPKPVAPPAPPSSSQLCRYFPAC-----KKMECPFYHPKHCRFNTQCTRPDCTF 284
P+ P C++ P C +++ C Y C P C F
Sbjct: 116 ------DPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCP-----EGPSCKF 164
Query: 285 YHPTINVP 292
HP +P
Sbjct: 165 MHPRFELP 172
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 133 RQLLSRLQIDPVMAETLQM-SQAEMSELSVA----QKPEKLLERCKYWPA---CKNGDEC 184
R LL ++DP + + + S+A L++ Q+ EK E C Y+ C G+ C
Sbjct: 629 RPLLRTGRLDPAGSCSRSLASRAVQRSLAIIRQARQRREKRKEYCMYYNRFGRCNRGERC 688
Query: 185 AYHHP---ISPCKAFPN--CKFAE-KCLFVH-------PNCKYDAK--CTKPDCPFTH-- 227
Y H ++ C F CK + C F H P C Y K C+ +CP++H
Sbjct: 689 PYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVY 748
Query: 228 VSRRIPVLS 236
VSR+ V S
Sbjct: 749 VSRKAEVCS 757
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 37.7 bits (86), Expect = 0.013
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 151 MSQAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKAFPNCKF------- 201
+SQA +++ +V +K +++ CKY+ C GD+C + H K CKF
Sbjct: 179 LSQAFINQHTVERKGKQI---CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCT 235
Query: 202 -AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 227
E CL++H CK+ KC + + C F+H
Sbjct: 236 RGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 37.4 bits (85), Expect = 0.017
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 19/93 (20%)
Query: 151 MSQAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKAFPNCKF------- 201
M+Q +++ +V K +++ CKY+ C GD+C + H K CKF
Sbjct: 260 MTQEFINQHTVEHKGKQI---CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCT 316
Query: 202 -AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 227
E C+++H CK+ AKC + D C F+H
Sbjct: 317 KGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSH 349
Score = 33.5 bits (75), Expect = 0.24
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 166 EKLLERCKYWPA--CKNGDECAYHHPISPCKAF---PNCKFAEKCLFVHPNCKYDAK 217
EK E CK++ C G+ C Y H PCK + C + C F H + + K
Sbjct: 301 EKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETK 357
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 37.0 bits (84), Expect = 0.022
Identities = 26/108 (24%), Positives = 34/108 (31%), Gaps = 39/108 (36%)
Query: 172 CKYW--PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDCPFTHVS 229
CK+W CK GD C + H + P C F K C+ +C F HV
Sbjct: 68 CKHWLRGLCKKGDHCKFLHQYDLTR-MPECYFYSKF----------GDCSNKECSFLHVK 116
Query: 230 RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQC 277
PA K +CP+Y C+ C
Sbjct: 117 --------------------------PAFKSQDCPWYDQGFCKDGPLC 138
>gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens]
Length = 269
Score = 35.8 bits (81), Expect = 0.049
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 213 KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC---PF 265
+Y CT P C P T S R P L P P P +S RY C C P
Sbjct: 111 RYPFLCTLPHCFPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPA 170
Query: 266 YHPKHCRFNTQCTRPDC 282
P R+ CT P C
Sbjct: 171 TSPSCARYPFLCTSPHC 187
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 210 PNC-KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC- 263
P+C +Y CT P C P T S R P L P P P +S RY C C
Sbjct: 151 PSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCTSPHCF 210
Query: 264 --PFYHPKHCRFNTQCTRP 280
P P R+ CT P
Sbjct: 211 PLPGTSPSCARYPFLCTLP 229
>gi|169201475 PREDICTED: similar to hCG1798126, partial [Homo
sapiens]
Length = 190
Score = 35.8 bits (81), Expect = 0.049
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 213 KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC---PF 265
+Y CT P C P T S R P L P P P +S RY C C P
Sbjct: 32 RYPFLCTLPHCFPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPA 91
Query: 266 YHPKHCRFNTQCTRPDC 282
P R+ CT P C
Sbjct: 92 TSPSCARYPFLCTSPHC 108
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 210 PNC-KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC- 263
P+C +Y CT P C P T S R P L P P P +S RY C C
Sbjct: 72 PSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCTSPHCF 131
Query: 264 --PFYHPKHCRFNTQCTRP 280
P P R+ CT P
Sbjct: 132 PLPGTSPSCARYPFLCTLP 150
>gi|169190743 PREDICTED: similar to hCG1798126 [Homo sapiens]
Length = 269
Score = 35.8 bits (81), Expect = 0.049
Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 213 KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC---PF 265
+Y CT P C P T S R P L P P P +S RY C C P
Sbjct: 111 RYPFLCTLPHCFPLPGTSPSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPA 170
Query: 266 YHPKHCRFNTQCTRPDC 282
P R+ CT P C
Sbjct: 171 TSPSCARYPFLCTSPHC 187
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 210 PNC-KYDAKCTKPDC---PFTHVS-RRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMEC- 263
P+C +Y CT P C P T S R P L P P P +S RY C C
Sbjct: 151 PSCARYPFLCTSPHCFPLPATSPSCARYPFLCTSPHCFPLPGTSPSCARYPFLCTSPHCF 210
Query: 264 --PFYHPKHCRFNTQCTRP 280
P P R+ CT P
Sbjct: 211 PLPGTSPSCARYPFLCTLP 229
>gi|209571555 von Willebrand factor D and EGF domains [Homo sapiens]
Length = 1590
Score = 32.3 bits (72), Expect = 0.54
Identities = 35/126 (27%), Positives = 44/126 (34%), Gaps = 31/126 (24%)
Query: 172 CKYWPACKNGDECAYHHPISP--CKAFP-----NCKFAEKCLFVHPNCKYDAKCTKPDCP 224
CKY C EC ++P CK P NC+ A P+CK KC KP+
Sbjct: 1298 CKY--PCGKSREC-----VAPNICKCKPGYIGSNCQTA----LCDPDCKNHGKCIKPNIC 1346
Query: 225 FTHVSRRIPVLSPKPVAPPAPPSSSQL------CRY---FPACKKMECPFYHPKHCRFNT 275
+ PP + L C Y P C+ M C +HC
Sbjct: 1347 QCLPGHGGATCDEEHCNPPCQHGGTCLAGNLCTCPYGFVGPRCETMVC----NRHCENGG 1402
Query: 276 QCTRPD 281
QC PD
Sbjct: 1403 QCLTPD 1408
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 32.3 bits (72), Expect = 0.54
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 172 CKYWP--ACKNGDECAYHHPISP------CKAFPN--CKFAEKCLFVH 209
C+Y+ CK GD C Y H +S CK F C + ++C + H
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEH 108
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.54
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 172 CKYWP--ACKNGDECAYHHPISP------CKAFPN--CKFAEKCLFVH 209
C+Y+ CK GD C Y H +S CK F C + ++C + H
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEH 108
>gi|122937388 MAX gene associated [Homo sapiens]
Length = 3114
Score = 32.3 bits (72), Expect = 0.54
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 244 APPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCTRPDCTF 284
APP ++ CR C + P HCR RPDC F
Sbjct: 1044 APPCNNDFCRLGCVCSSLALEKRQPAHCR------RPDCMF 1078
>gi|169211819 PREDICTED: keratin associated protein [Homo sapiens]
Length = 517
Score = 32.0 bits (71), Expect = 0.70
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 27/111 (24%)
Query: 176 PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDC------PFTHVS 229
P C C S C+ P+C + C P C + C+ C P +V
Sbjct: 281 PVCCVQSSCEPPSVPSTCQE-PSCCVSSIC---QPICSEPSPCSPAVCVSSPCQPTCYVV 336
Query: 230 RRIPVLSPKPVAPPAP----------PSSSQLCR-------YFPACKKMEC 263
+R P + P+PV+ P+ S+S +CR Y P+ K C
Sbjct: 337 KRCPSVCPEPVSCPSTSCRPLSCSPGSSASAICRPTCPRTFYIPSSSKRPC 387
>gi|239745811 PREDICTED: hypothetical protein XP_002343557 [Homo
sapiens]
Length = 517
Score = 32.0 bits (71), Expect = 0.70
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 27/111 (24%)
Query: 176 PACKNGDECAYHHPISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKPDC------PFTHVS 229
P C C S C+ P+C + C P C + C+ C P +V
Sbjct: 281 PVCCVQSSCEPPSVPSTCQE-PSCCVSSIC---QPICSEPSPCSPAVCVSSPCQPTCYVV 336
Query: 230 RRIPVLSPKPVAPPAP----------PSSSQLCR-------YFPACKKMEC 263
+R P + P+PV+ P+ S+S +CR Y P+ K C
Sbjct: 337 KRCPSVCPEPVSCPSTSCRPLSCSPGSSASAICRPTCPRTFYIPSSSKRPC 387
>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
sapiens]
Length = 501
Score = 32.0 bits (71), Expect = 0.70
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 219 TKPDCPFTHVSRRIPVLSPKPVAPPAPPSSSQLCRYFPACKKMECPFYHPKHCRFNTQCT 278
++P C T +RR P P+A P Q C F+ CRF +C
Sbjct: 3 SRPPCGATSSARRACQF-PAPMAAAREPELPQEAPATEPAPPPACRFFLEGRCRFGARCR 61
Query: 279 RPDCTFYHPTINVPP 293
+P HP PP
Sbjct: 62 QP-----HPGAPAPP 71
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 31.6 bits (70), Expect = 0.92
Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 24/143 (16%)
Query: 50 INEIKGMKAAILTVEANLFDLNVRVSK----NEAKISSLEVKMNEYSTTYECNRQFEDQE 105
+NE + ++ A+ ++ + L + + K NE + + K EY E N +F
Sbjct: 1434 VNENELLRQAVTNLKERILILEMDIGKLKGENEKIVETYRGKETEYQALQETNMKFSMML 1493
Query: 106 EDTESQSRTTDVKIIGF-----------------LRNVEKGTQQRQLLSRLQIDPVMAET 148
+ E + + K + F L N K Q++ ++ + + D VM
Sbjct: 1494 REKEFECHSMKEKALAFEQLLKEKEQGKTGELNQLLNAVKSMQEKTVVFQQERDQVM--- 1550
Query: 149 LQMSQAEMSELSVAQKPEKLLER 171
L + Q +M ++ + ++L ++
Sbjct: 1551 LALKQKQMENTALQNEVQRLRDK 1573
>gi|213385278 TNF receptor-associated factor 3 interacting protein 1
isoform 2 [Homo sapiens]
Length = 625
Score = 31.2 bits (69), Expect = 1.2
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 31 CSLNELDNISHLLRKISADINEIKGMKAAILTVEANLFDLNV-----RVSKNEAKISSLE 85
C LN+L + + R ++ + E+KG +A++ + L + NV RV KN E
Sbjct: 114 CCLNKLSSDDAVRRVLAGEKGEVKG-RASLTSRSQELDNKNVREEESRVHKNTEDRGDAE 172
Query: 86 VKMNEYSTTYECNRQFEDQEEDTESQSRTTD 116
+K E ST+ + +Q E+ +ED + + + D
Sbjct: 173 IK--ERSTSRD-RKQKEELKEDRKPREKDKD 200
>gi|20070262 TNF receptor-associated factor 3 interacting protein 1
isoform 1 [Homo sapiens]
Length = 691
Score = 31.2 bits (69), Expect = 1.2
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 31 CSLNELDNISHLLRKISADINEIKGMKAAILTVEANLFDLNV-----RVSKNEAKISSLE 85
C LN+L + + R ++ + E+KG +A++ + L + NV RV KN E
Sbjct: 114 CCLNKLSSDDAVRRVLAGEKGEVKG-RASLTSRSQELDNKNVREEESRVHKNTEDRGDAE 172
Query: 86 VKMNEYSTTYECNRQFEDQEEDTESQSRTTD 116
+K E ST+ + +Q E+ +ED + + + D
Sbjct: 173 IK--ERSTSRD-RKQKEELKEDRKPREKDKD 200
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 31.2 bits (69), Expect = 1.2
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 37 DNISHLLRKISADINEIKGMKAAILTVEANLFDLNVRVSKNEAKISSLEVKM-------- 88
+NI ++ K E+K + E + +L V +S+ E +IS+++ ++
Sbjct: 1463 ENIKEIVAKHLETEEELKVAHCCLKEQEETINELRVNLSEKETEISTIQKQLEAINDKLQ 1522
Query: 89 NEYSTTYECNRQFEDQEEDTESQSRTTDVKIIGFLRNVEKGTQQRQLLSRLQIDPVMAET 148
N+ YE QF + ++ +E Q + ++K R + Q I+ M E
Sbjct: 1523 NKIQEIYEKEEQF-NIKQISEVQEKVNELKQFKEHRKAKDSALQ-------SIESKMLEL 1574
Query: 149 LQMSQAEMSELSVAQKPEKLLER 171
Q E+ + K ++ ++R
Sbjct: 1575 TNRLQESQEEIQIMIKEKEEMKR 1597
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 172 CKYWP--ACKNGDECAYHHPISPCKAFPNCKFAEK--CLFVHPNCKYDAKCTKPDCPFTH 227
C+Y+ C+ G +C + H ++ K CK+ +K C + C+YD T+P
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAY-GTRCRYDH--TRPSAAAGG 64
Query: 228 VSRRIPVLSPKPV-APPAPPS 247
+ P P P PPS
Sbjct: 65 AVGTMAHSVPSPAFHSPHPPS 85
>gi|55770898 Rho GTPase activating protein 25 isoform a [Homo
sapiens]
Length = 645
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/102 (18%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 35 ELDNISHLLRKISADIN--------EIKGMKAAILTVEANLFDLNVRVSKNEAKISSLEV 86
E+D++ +++++ +I +IK ++ V A + LN + K + K ++LE+
Sbjct: 549 EIDSLQRMVQELRKEIETQKQMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALEI 608
Query: 87 KMNEYSTTYECNRQFEDQEEDTESQSRTTDVKIIGFLRNVEK 128
+ R E ED E +++ + ++ F++++++
Sbjct: 609 SL----------RNMERSREDVEKRNKALEEEVKEFVKSMKE 640
>gi|7661882 Rho GTPase activating protein 25 isoform b [Homo
sapiens]
Length = 638
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/102 (18%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 35 ELDNISHLLRKISADIN--------EIKGMKAAILTVEANLFDLNVRVSKNEAKISSLEV 86
E+D++ +++++ +I +IK ++ V A + LN + K + K ++LE+
Sbjct: 542 EIDSLQRMVQELRKEIETQKQMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALEI 601
Query: 87 KMNEYSTTYECNRQFEDQEEDTESQSRTTDVKIIGFLRNVEK 128
+ R E ED E +++ + ++ F++++++
Sbjct: 602 SL----------RNMERSREDVEKRNKALEEEVKEFVKSMKE 633
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,210,879
Number of Sequences: 37866
Number of extensions: 630001
Number of successful extensions: 3894
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3743
Number of HSP's gapped (non-prelim): 126
length of query: 306
length of database: 18,247,518
effective HSP length: 102
effective length of query: 204
effective length of database: 14,385,186
effective search space: 2934577944
effective search space used: 2934577944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.