Search of human proteins with 5032161

Search of human proteins with 5032161

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5032161 elongin C [Homo sapiens]
         (112 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5032161 elongin C [Homo sapiens]                                   231   9e-62
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]           206   4e-54
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]           206   4e-54
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]           206   4e-54
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]           176   4e-45
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]           175   6e-45
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ...   174   1e-44
gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ...   133   3e-32
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ...   133   3e-32
gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]          125   9e-30
gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]            93   5e-20
gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ...    38   0.002
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ...    38   0.002
gi|239755758 PREDICTED: similar to S-phase kinase-associated pro...    38   0.002
gi|239750260 PREDICTED: similar to S-phase kinase-associated pro...    38   0.002
gi|239744568 PREDICTED: similar to S-phase kinase-associated pro...    38   0.002
gi|239753827 PREDICTED: similar to S-phase kinase-associated pro...    32   0.14 
gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo ...    32   0.14 
gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo ...    32   0.14 
gi|78190498 secreted modular calcium-binding protein 1 isoform 1...    28   2.1  
gi|11545873 secreted modular calcium-binding protein 1 isoform 2...    28   2.1  
gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo ...    27   2.7  
gi|163914394 DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...    27   4.6  
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]    26   7.8  
gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens]     26   7.8  

>gi|5032161 elongin C [Homo sapiens]
          Length = 112

 Score =  231 bits (589), Expect = 9e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
           MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
Sbjct: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60

Query: 61  NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
           NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
Sbjct: 61  NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112


>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  206 bits (523), Expect = 4e-54
 Identities = 101/115 (87%), Positives = 107/115 (93%), Gaps = 3/115 (2%)

Query: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
           MDGE+KTYGGCEGPDA+YVKLI SDGHEFIVK+E ALTSGTIKAMLSGPGQFAENE +EV
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  NFREIPSHVLSKV---CMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
           +FREIPSHVLSKV   CMYF YKVRY NSSTEIPEFP+APEIALELLMAANFLDC
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115


>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  206 bits (523), Expect = 4e-54
 Identities = 101/115 (87%), Positives = 107/115 (93%), Gaps = 3/115 (2%)

Query: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
           MDGE+KTYGGCEGPDA+YVKLI SDGHEFIVK+E ALTSGTIKAMLSGPGQFAENE +EV
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  NFREIPSHVLSKV---CMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
           +FREIPSHVLSKV   CMYF YKVRY NSSTEIPEFP+APEIALELLMAANFLDC
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115


>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  206 bits (523), Expect = 4e-54
 Identities = 101/115 (87%), Positives = 107/115 (93%), Gaps = 3/115 (2%)

Query: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
           MDGE+KTYGGCEGPDA+YVKLI SDGHEFIVK+E ALTSGTIKAMLSGPGQFAENE +EV
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  NFREIPSHVLSKV---CMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
           +FREIPSHVLSKV   CMYF YKVRY NSSTEIPEFP+APEIALELLMAANFLDC
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115


>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 269

 Score =  176 bits (446), Expect = 4e-45
 Identities = 87/111 (78%), Positives = 95/111 (85%)

Query: 2   DGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVN 61
           DG +KTYG CEGPDAMYVKLISS GH+ IVKRE+A+TS TIKAMLSGPGQ AENE +EV+
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218

Query: 62  FREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
           FREI SHVLSKVCMY TYK  YTNSSTEI +FP AP+IA ELLM  NFLDC
Sbjct: 219 FREISSHVLSKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 269


>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 269

 Score =  175 bits (444), Expect = 6e-45
 Identities = 86/111 (77%), Positives = 95/111 (85%)

Query: 2   DGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVN 61
           DG +KTYG CEGPDAMYVKLISS GH+ IVKRE+A+TS TIKAMLSGPGQ AENE +EV+
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218

Query: 62  FREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
           FREI SHVLSKVCMY TYK  YTNSSTEI +FP AP++A ELLM  NFLDC
Sbjct: 219 FREISSHVLSKVCMYVTYKGHYTNSSTEILKFPAAPQLAPELLMTVNFLDC 269


>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
           sapiens]
          Length = 287

 Score =  174 bits (441), Expect = 1e-44
 Identities = 86/111 (77%), Positives = 94/111 (84%)

Query: 2   DGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVN 61
           DG +KTYG CEGPDAMYVKLISS GH+ IVKRE+A+TS TIKAMLSGPGQ AENE +EV+
Sbjct: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236

Query: 62  FREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
           FREI SHVLSKVCMY TY   YTNSSTEI +FP AP+IA ELLM  NFLDC
Sbjct: 237 FREISSHVLSKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287


>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
           sapiens]
          Length = 120

 Score =  133 bits (335), Expect = 3e-32
 Identities = 72/114 (63%), Positives = 85/114 (74%), Gaps = 7/114 (6%)

Query: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
           M+GEEK+  G  GPDAM  KL+SSD  +FIVKREH   SG  KA+LSGPGQ AENET++V
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  NFREIPSHVL---SKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 111
           NFREIP       +K C+YFTYKV Y+NSSTEIPEF      ALE+LMA++FLD
Sbjct: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110


>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
           sapiens]
          Length = 120

 Score =  133 bits (335), Expect = 3e-32
 Identities = 72/114 (63%), Positives = 85/114 (74%), Gaps = 7/114 (6%)

Query: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
           M+GEEK+  G  GPDAM  KL+SSD  +FIVKREH   SG  KA+LSGPGQ AENET++V
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  NFREIPSHVL---SKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 111
           NFREIP       +K C+YFTYKV Y+NSSTEIPEF      ALE+LMA++FLD
Sbjct: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110


>gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
          Length = 181

 Score =  125 bits (313), Expect = 9e-30
 Identities = 69/113 (61%), Positives = 81/113 (71%), Gaps = 7/113 (6%)

Query: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
           M+GEEK+  G  GPDAM  KL+SSD  +FIVKREH   SG  KA+LSGPGQ AENET++V
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  NFREIPSHVL---SKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110
           NFREIP       +K C+YFT KV Y+NSSTEIPEF      ALE+LM  +FL
Sbjct: 61  NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF----LTALEVLMIQHFL 109


>gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 101

 Score = 92.8 bits (229), Expect = 5e-20
 Identities = 52/98 (53%), Positives = 61/98 (62%), Gaps = 9/98 (9%)

Query: 1  MDGEEKTYGGCEGPDAMYVKLISSDGH----EFIVKREHALTSGTIKAMLSGPGQFAENE 56
          MD EEKTY  CE  + M      S+G+    EF+VK   A TS T+K +L+GP  FAE  
Sbjct: 1  MDEEEKTYSVCESSNTMM-----SNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKG 55

Query: 57 TNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94
          T EVN R+ PS VL K C YFTY   YT SSTEIP+FP
Sbjct: 56 TIEVNLRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFP 93


>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
           sapiens]
          Length = 163

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 15/108 (13%)

Query: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L KV  + T
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 79  Y-------KVRYTNSSTEIPEFPIAPEIAL--------ELLMAANFLD 111
           +            N      + P+  +  L        EL++AAN+LD
Sbjct: 64  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
           sapiens]
          Length = 160

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 15/108 (13%)

Query: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
           +KL SSDG  F V  E A  S TIK ML   G   E + + V    + + +L KV  + T
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 79  Y-------KVRYTNSSTEIPEFPIAPEIAL--------ELLMAANFLD 111
           +            N      + P+  +  L        EL++AAN+LD
Sbjct: 64  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|239755758 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
           +KL SS G  F V  E    S TIK ML   G   E + + V    + + +L KV  + T
Sbjct: 4   IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63

Query: 79  Y--------KVRYTNSSTEIPEFPIAPEIAL--------ELLMAANFLD 111
           +        KV Y N      + P+  +  L        EL++AAN+LD
Sbjct: 64  HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|239750260 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
           +KL SS G  F V  E    S TIK ML   G   E + + V    + + +L KV  + T
Sbjct: 4   IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63

Query: 79  Y--------KVRYTNSSTEIPEFPIAPEIAL--------ELLMAANFLD 111
           +        KV Y N      + P+  +  L        EL++AAN+LD
Sbjct: 64  HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|239744568 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 17/109 (15%)

Query: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
           +KL SS G  F V  E    S TIK ML   G   E + + V    + + +L KV  + T
Sbjct: 4   IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63

Query: 79  Y--------KVRYTNSSTEIPEFPIAPEIAL--------ELLMAANFLD 111
           +        KV Y N      + P+  +  L        EL++AAN+LD
Sbjct: 64  HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|239753827 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 202

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 23/115 (20%)

Query: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
           +KL+SSDG  F V  E A  S T+K ML   G   + + + V    + + +L +     T
Sbjct: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94

Query: 79  YKVRYTNSSTEIPEFP----------------------IAPEIALELLMAANFLD 111
                TN     P  P                      I P    E+++AAN+LD
Sbjct: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149


>gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo
           sapiens]
          Length = 202

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 23/115 (20%)

Query: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
           +KL+SSDG  F V  E A  S T+K ML   G   + + + V    + + +L +     T
Sbjct: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94

Query: 79  YKVRYTNSSTEIPEFP----------------------IAPEIALELLMAANFLD 111
                TN     P  P                      I P    E+++AAN+LD
Sbjct: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149


>gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo
           sapiens]
          Length = 202

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 23/115 (20%)

Query: 19  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 78
           +KL+SSDG  F V  E A  S T+K ML   G   + + + V    + + +L +     T
Sbjct: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94

Query: 79  YKVRYTNSSTEIPEFP----------------------IAPEIALELLMAANFLD 111
                TN     P  P                      I P    E+++AAN+LD
Sbjct: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149


>gi|78190498 secreted modular calcium-binding protein 1 isoform 1
           [Homo sapiens]
          Length = 435

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 13/74 (17%)

Query: 28  EFIVKREHALTSGTIKAMLS----GPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY 83
           EFI     ALT+  ++A+ S    G G+F+E +         PSH L +  +++ +    
Sbjct: 322 EFITSLLDALTTDMVQAINSAAPTGGGRFSEPD---------PSHTLEERVVHWYFSQLD 372

Query: 84  TNSSTEIPEFPIAP 97
           +NSS +I +  + P
Sbjct: 373 SNSSNDINKREMKP 386


>gi|11545873 secreted modular calcium-binding protein 1 isoform 2
           [Homo sapiens]
          Length = 434

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 13/74 (17%)

Query: 28  EFIVKREHALTSGTIKAMLS----GPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY 83
           EFI     ALT+  ++A+ S    G G+F+E +         PSH L +  +++ +    
Sbjct: 322 EFITSLLDALTTDMVQAINSAAPTGGGRFSEPD---------PSHTLEERVVHWYFSQLD 372

Query: 84  TNSSTEIPEFPIAP 97
           +NSS +I +  + P
Sbjct: 373 SNSSNDINKREMKP 386


>gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo
            sapiens]
          Length = 1032

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 21   LISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVC 74
            ++S  G   +     A+ SG  KA++SGPG+   +   +     +   ++S +C
Sbjct: 966  IVSGPGKAIVSGPGKAIVSGPGKAIVSGPGKAIVSSPGKAIVSSLGKAIVSSLC 1019



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 21  LISSDGHEFIVKREHALTSGTIKAMLSGPGQ 51
           ++SS G   +     A+ SG  KA++SGPG+
Sbjct: 669 IVSSPGKAIVSSLGKAIVSGPGKAIVSGPGK 699



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 11 CEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQ 51
          C+ P A    ++S  G   +     A+ SG  KA++SGPG+
Sbjct: 23 CQPPKA----IVSGPGKAIVSGPGKAIVSGPGKAIVSGPGK 59



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 21  LISSDGHEFIVKREHALTSGTIKAMLSGPGQ 51
           ++SS G   +     A+ SG  KA++SGPG+
Sbjct: 461 IVSSLGKAIVCSLGKAIVSGPGKAIVSGPGK 491



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 21  LISSDGHEFIVKREHALTSGTIKAMLSGPGQ 51
           ++SS G   +     A+ SG  KA++SGPG+
Sbjct: 573 IVSSPGKAIVSGPGKAIVSGPGKAIVSGPGK 603



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 11  CEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQ 51
           C+ P A    ++S  G   +     A+ SG  KA++SGPG+
Sbjct: 864 CQPPKA----IVSGPGKAIVSGPGKAIVSGPGKAIVSGPGK 900



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 21  LISSDGHEFIVKREHALTSGTIKAMLSGPGQ 51
           ++SS G   +     A+ SG  KA++SGPG+
Sbjct: 950 IVSSPGKAIVSGLGKAIVSGPGKAIVSGPGK 980


>gi|163914394 DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo
           sapiens]
          Length = 717

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 90  IPEFPIAPEIALELLMAANFLDC 112
           + EFP+APE+A  LL +  F DC
Sbjct: 465 LSEFPLAPELAKALLASCEF-DC 486


>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
          Length = 2087

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 10  GCEGPDAMYVKLISSDGHEFIVKREH 35
           GCE  + +Y+  I+  G  +IVKR +
Sbjct: 148 GCESKELVYLVQIACQGKSWIVKRSY 173


>gi|24308277 SPARC related modular calcium binding 2 [Homo sapiens]
          Length = 457

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 12/74 (16%)

Query: 27  HEFIVKREHALTSGTIKAML---SGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY 83
           HEF+     AL++  + A     S  G+ +E +         PSH L +  +++ +K+  
Sbjct: 321 HEFLTSVLDALSTDMVHAASDPSSSSGRLSEPD---------PSHTLEERVVHWYFKLLD 371

Query: 84  TNSSTEIPEFPIAP 97
            NSS +I +  I P
Sbjct: 372 KNSSGDIGKKEIKP 385


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,234,980
Number of Sequences: 37866
Number of extensions: 150321
Number of successful extensions: 392
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 105
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.