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Search of human proteins with 49619237
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49619237 uroplakin 1B [Homo sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49619237 uroplakin 1B [Homo sapiens] 563 e-161
gi|5902148 uroplakin 1A [Homo sapiens] 212 3e-55
gi|42476204 tetraspanin 18 isoform 2 [Homo sapiens] 94 1e-19
gi|72534746 tetraspanin 18 isoform 1 [Homo sapiens] 93 3e-19
gi|68800005 tetraspanin 4 isoform a [Homo sapiens] 64 2e-10
gi|4507543 tetraspanin 4 isoform a [Homo sapiens] 64 2e-10
gi|68800018 tetraspanin 4 isoform a [Homo sapiens] 64 2e-10
gi|68800024 tetraspanin 4 isoform a [Homo sapiens] 64 2e-10
gi|68800011 tetraspanin 4 isoform a [Homo sapiens] 64 2e-10
gi|68799997 tetraspanin 4 isoform a [Homo sapiens] 64 2e-10
gi|4502679 CD63 antigen isoform A [Homo sapiens] 61 9e-10
gi|91199546 CD63 antigen isoform B [Homo sapiens] 60 2e-09
gi|68800032 tetraspanin 4 isoform b [Homo sapiens] 60 2e-09
gi|10834972 CD53 antigen [Homo sapiens] 56 4e-08
gi|91106727 CD53 antigen [Homo sapiens] 56 4e-08
gi|50511934 transmembrane 4 superfamily member 17 isoform b [Hom... 54 1e-07
gi|5729941 tetraspanin 9 [Homo sapiens] 54 2e-07
gi|21264578 tetraspan 1 [Homo sapiens] 53 2e-07
gi|190194420 tetraspanin 14 isoform 1 [Homo sapiens] 53 3e-07
gi|87159824 CD151 antigen [Homo sapiens] 52 4e-07
gi|87159822 CD151 antigen [Homo sapiens] 52 4e-07
gi|21237751 CD151 antigen [Homo sapiens] 52 4e-07
gi|21237748 CD151 antigen [Homo sapiens] 52 4e-07
gi|122937466 tetraspanin 11 [Homo sapiens] 52 4e-07
gi|54859560 transmembrane 4 superfamily member 17 isoform a [Hom... 52 5e-07
gi|54859505 transmembrane 4 superfamily member 17 isoform c [Hom... 52 5e-07
gi|4502693 CD9 antigen [Homo sapiens] 50 3e-06
gi|4502663 CD37 antigen isoform A [Homo sapiens] 48 7e-06
gi|5032201 transmembrane 4 superfamily member 8 isoform 1 [Homo ... 47 1e-05
gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens] 47 1e-05
>gi|49619237 uroplakin 1B [Homo sapiens]
Length = 260
Score = 563 bits (1450), Expect = e-161
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MAKDNSTVRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAW 60
MAKDNSTVRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAW
Sbjct: 1 MAKDNSTVRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAW 60
Query: 61 IGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNL 120
IGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNL
Sbjct: 61 IGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNL 120
Query: 121 FLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENN 180
FLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENN
Sbjct: 121 FLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENN 180
Query: 181 DADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFAI 240
DADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFAI
Sbjct: 181 DADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFAI 240
Query: 241 LCWTFWVLLGTMFYWSRIEY 260
LCWTFWVLLGTMFYWSRIEY
Sbjct: 241 LCWTFWVLLGTMFYWSRIEY 260
>gi|5902148 uroplakin 1A [Homo sapiens]
Length = 258
Score = 212 bits (539), Expect = 3e-55
Identities = 98/248 (39%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
Query: 13 GLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGICLFCL 72
GLL+ GN+II G++L AE I+ +DQ+ +YPL+ + DD++ AWI IF G F +
Sbjct: 18 GLLVVGNIIILLSGLSLFAETIWVTADQYRVYPLMGVSGKDDVFAGAWIAIFCGFSFFMV 77
Query: 73 SVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFT--PNLFLKQMLERYQ 130
+ G+ + R ++L Y +LM IVY FE ASCIT+ T +D+ P+L KQML Y
Sbjct: 78 ASFGVGAALCRRRSMVLTYLVLMLIVYIFECASCITSYTHRDYMVSNPSLITKQMLTFYS 137
Query: 131 NNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADYPWPRQC 190
++ + +T+ WDR+M++ CCG +GP DW +TSAFR + +PWP C
Sbjct: 138 ADTDQGQE-------LTRLWDRVMIEQECCGTSGPMDWVNFTSAFRAATPEVVFPWPPLC 190
Query: 191 CVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFAILCWTFWVLLG 250
C PLN E C+LG + +GC+E I ++ + WG++WFGFAIL WT V+L
Sbjct: 191 CRRTGNFIPLNEEGCRLGHMDYLFTKGCFEHIGHAIDSYTWGISWFGFAILMWTLPVMLI 250
Query: 251 TMFYWSRI 258
M++++ +
Sbjct: 251 AMYFYTML 258
>gi|42476204 tetraspanin 18 isoform 2 [Homo sapiens]
Length = 248
Score = 94.0 bits (232), Expect = 1e-19
Identities = 70/263 (26%), Positives = 122/263 (46%), Gaps = 23/263 (8%)
Query: 4 DNSTVRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGI 63
+ + C + L+ N I G L A I+ + D ++ A N + A+I +
Sbjct: 2 EGDCLSCMKYLMFVFNFFIFLGGACLLAIGIWVMVDPTGFREIVAA--NPLLLTGAYILL 59
Query: 64 FVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLK 123
+G LF L LG G ++ ++ +LL +F+ + I++ E+++ I A ++ T F K
Sbjct: 60 AMGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFTK 119
Query: 124 QMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDAD 183
++ + YQ N N+ D + + TW+ +M+ CCGVNGP D+ K+ S FR D++
Sbjct: 120 ELTKHYQGN---NDTDIF-----SATWNSVMITFGCCGVNGPEDF-KFASVFRLLTLDSE 170
Query: 184 YPWPRQCCVMNNLKEP-------LNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWF 236
P CC +EP L+ E C LG F + QGCY +I + +
Sbjct: 171 -EVPEACC----RREPQSRDGVLLSREECLLGRSLFLNKQGCYTVILNTFETYVYLAGAL 225
Query: 237 GFAILCWTFWVLLGTMFYWSRIE 259
+L + ++ M + I+
Sbjct: 226 AIGVLAIELFAMIFAMCLFRGIQ 248
>gi|72534746 tetraspanin 18 isoform 1 [Homo sapiens]
Length = 267
Score = 92.8 bits (229), Expect = 3e-19
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 4 DNSTVRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGI 63
+ + C + L+ N I G L A I+ + D ++ A N + A+I +
Sbjct: 2 EGDCLSCMKYLMFVFNFFIFLGGACLLAIGIWVMVDPTGFREIVAA--NPLLLTGAYILL 59
Query: 64 FVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLK 123
+G LF L LG G ++ ++ +LL +F+ + I++ E+++ I A ++ T F K
Sbjct: 60 AMGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFTK 119
Query: 124 QMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDAD 183
++ + YQ N N+ D + + TW+ +M+ CCGVNGP D+ K+ S FR D++
Sbjct: 120 ELTKHYQGN---NDTDVF-----SATWNSVMITFGCCGVNGPEDF-KFASVFRLLTLDSE 170
Query: 184 YPWPRQCCVMNNLKEP-------LNLEACKLGVPGFYHNQGCYELI 222
P CC +EP L+ E C LG F + QGCY +I
Sbjct: 171 -EVPEACC----RREPQSRDGVLLSREECLLGRSLFLNKQGCYTVI 211
>gi|68800005 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 63.5 bits (153), Expect = 2e-10
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 58 AAWIGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFE--VASCITAATQQDF 115
AA + I G + + +G +G +K ++ +LL +F+L+ +V+ E +A A T +
Sbjct: 53 AANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKID 112
Query: 116 FTPNLFLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAF 175
LK+ L Y N G+T W + CCGV+ +DW + +A
Sbjct: 113 RYAQQDLKKGLHLYGTQG---------NVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNAT 163
Query: 176 RTENNDADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAW 235
R P CC+ + E+C L PG + CYE + + + V
Sbjct: 164 RV---------PDSCCLEFS-------ESCGLHAPGTWWKAPCYETVKVWLQENLLAVGI 207
Query: 236 FGFAILCWTFWVLLGTMF 253
FG LC +LG F
Sbjct: 208 FG---LCTALVQILGLTF 222
>gi|4507543 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 63.5 bits (153), Expect = 2e-10
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 58 AAWIGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFE--VASCITAATQQDF 115
AA + I G + + +G +G +K ++ +LL +F+L+ +V+ E +A A T +
Sbjct: 53 AANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKID 112
Query: 116 FTPNLFLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAF 175
LK+ L Y N G+T W + CCGV+ +DW + +A
Sbjct: 113 RYAQQDLKKGLHLYGTQG---------NVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNAT 163
Query: 176 RTENNDADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAW 235
R P CC+ + E+C L PG + CYE + + + V
Sbjct: 164 RV---------PDSCCLEFS-------ESCGLHAPGTWWKAPCYETVKVWLQENLLAVGI 207
Query: 236 FGFAILCWTFWVLLGTMF 253
FG LC +LG F
Sbjct: 208 FG---LCTALVQILGLTF 222
>gi|68800018 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 63.5 bits (153), Expect = 2e-10
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 58 AAWIGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFE--VASCITAATQQDF 115
AA + I G + + +G +G +K ++ +LL +F+L+ +V+ E +A A T +
Sbjct: 53 AANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKID 112
Query: 116 FTPNLFLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAF 175
LK+ L Y N G+T W + CCGV+ +DW + +A
Sbjct: 113 RYAQQDLKKGLHLYGTQG---------NVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNAT 163
Query: 176 RTENNDADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAW 235
R P CC+ + E+C L PG + CYE + + + V
Sbjct: 164 RV---------PDSCCLEFS-------ESCGLHAPGTWWKAPCYETVKVWLQENLLAVGI 207
Query: 236 FGFAILCWTFWVLLGTMF 253
FG LC +LG F
Sbjct: 208 FG---LCTALVQILGLTF 222
>gi|68800024 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 63.5 bits (153), Expect = 2e-10
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 58 AAWIGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFE--VASCITAATQQDF 115
AA + I G + + +G +G +K ++ +LL +F+L+ +V+ E +A A T +
Sbjct: 53 AANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKID 112
Query: 116 FTPNLFLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAF 175
LK+ L Y N G+T W + CCGV+ +DW + +A
Sbjct: 113 RYAQQDLKKGLHLYGTQG---------NVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNAT 163
Query: 176 RTENNDADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAW 235
R P CC+ + E+C L PG + CYE + + + V
Sbjct: 164 RV---------PDSCCLEFS-------ESCGLHAPGTWWKAPCYETVKVWLQENLLAVGI 207
Query: 236 FGFAILCWTFWVLLGTMF 253
FG LC +LG F
Sbjct: 208 FG---LCTALVQILGLTF 222
>gi|68800011 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 63.5 bits (153), Expect = 2e-10
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 58 AAWIGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFE--VASCITAATQQDF 115
AA + I G + + +G +G +K ++ +LL +F+L+ +V+ E +A A T +
Sbjct: 53 AANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKID 112
Query: 116 FTPNLFLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAF 175
LK+ L Y N G+T W + CCGV+ +DW + +A
Sbjct: 113 RYAQQDLKKGLHLYGTQG---------NVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNAT 163
Query: 176 RTENNDADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAW 235
R P CC+ + E+C L PG + CYE + + + V
Sbjct: 164 RV---------PDSCCLEFS-------ESCGLHAPGTWWKAPCYETVKVWLQENLLAVGI 207
Query: 236 FGFAILCWTFWVLLGTMF 253
FG LC +LG F
Sbjct: 208 FG---LCTALVQILGLTF 222
>gi|68799997 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 63.5 bits (153), Expect = 2e-10
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 58 AAWIGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFE--VASCITAATQQDF 115
AA + I G + + +G +G +K ++ +LL +F+L+ +V+ E +A A T +
Sbjct: 53 AANLLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKID 112
Query: 116 FTPNLFLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAF 175
LK+ L Y N G+T W + CCGV+ +DW + +A
Sbjct: 113 RYAQQDLKKGLHLYGTQG---------NVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNAT 163
Query: 176 RTENNDADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAW 235
R P CC+ + E+C L PG + CYE + + + V
Sbjct: 164 RV---------PDSCCLEFS-------ESCGLHAPGTWWKAPCYETVKVWLQENLLAVGI 207
Query: 236 FGFAILCWTFWVLLGTMF 253
FG LC +LG F
Sbjct: 208 FG---LCTALVQILGLTF 222
>gi|4502679 CD63 antigen isoform A [Homo sapiens]
Length = 238
Score = 61.2 bits (147), Expect = 9e-10
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 25/191 (13%)
Query: 63 IFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFL 122
I VG+ LF ++ +G G K + +++ + I + ++ EVA+ I +D
Sbjct: 58 IAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRD-------- 109
Query: 123 KQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDA 182
+++ + NN ++ KNN DR+ CCG +DW+K S +
Sbjct: 110 -KVMSEFNNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNR---- 164
Query: 183 DYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFAILC 242
P CC+ + +N + H +GC E I G + ++ VA A L
Sbjct: 165 ---VPDSCCINVTVGCGINFNEKAI------HKEGCVEKIGGWLRKNVLVVA---AAALG 212
Query: 243 WTFWVLLGTMF 253
F +LG +F
Sbjct: 213 IAFVEVLGIVF 223
>gi|91199546 CD63 antigen isoform B [Homo sapiens]
Length = 236
Score = 60.1 bits (144), Expect = 2e-09
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 22/172 (12%)
Query: 63 IFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFL 122
I VG+ LF ++ +G G K + +++ + I + ++ EVA+ I +D
Sbjct: 58 IAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRD-------- 109
Query: 123 KQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDA 182
+++ + NN ++ KNN DR+ CCG +DW+K S +
Sbjct: 110 -KVMSEFNNNFRQQMENYPKNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNR---- 164
Query: 183 DYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVA 234
P CC+ + +N + H +GC E I G + ++ VA
Sbjct: 165 ---VPDSCCINVTVGCGINFNEKAI------HKEGCVEKIGGWLRKNVLVVA 207
>gi|68800032 tetraspanin 4 isoform b [Homo sapiens]
Length = 174
Score = 59.7 bits (143), Expect = 2e-09
Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 72 LSVLGIVGIMKSSRKILLAYFILMFIVYAFE--VASCITAATQQDFFTPNLFLKQMLERY 129
+ +G +G +K ++ +LL +F+L+ +V+ E +A A T + LK+ L Y
Sbjct: 3 IGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLY 62
Query: 130 QNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADYPWPRQ 189
N G+T W + CCGV+ +DW + +A R P
Sbjct: 63 GTQG---------NVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRV---------PDS 104
Query: 190 CCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFAILCWTFWVLL 249
CC+ + E+C L PG + CYE + + + V FG LC +L
Sbjct: 105 CCLEFS-------ESCGLHAPGTWWKAPCYETVKVWLQENLLAVGIFG---LCTALVQIL 154
Query: 250 GTMF 253
G F
Sbjct: 155 GLTF 158
>gi|10834972 CD53 antigen [Homo sapiens]
Length = 219
Score = 55.8 bits (133), Expect = 4e-08
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 6 STVRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHS--LYPLLEATDNDDIYGAAWIGI 63
S+++ + +L F N++ CG + I+ + + L+ L + +++ +
Sbjct: 4 SSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVF------V 57
Query: 64 FVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFL- 122
VG + ++ LG +G +K ++ +L+++FIL+ I+ EV I LF+
Sbjct: 58 IVGSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAIL-----------LFVY 106
Query: 123 KQMLERYQNNSPPNNDDQWKNNGVTKT-WDRLMLQDNCCGVNGPSDW 168
+Q L Y ++ ++ ++ TK WD + CCG+NG SDW
Sbjct: 107 EQKLNEYVAKGLTDSIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDW 153
>gi|91106727 CD53 antigen [Homo sapiens]
Length = 219
Score = 55.8 bits (133), Expect = 4e-08
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 6 STVRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHS--LYPLLEATDNDDIYGAAWIGI 63
S+++ + +L F N++ CG + I+ + + L+ L + +++ +
Sbjct: 4 SSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVF------V 57
Query: 64 FVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFL- 122
VG + ++ LG +G +K ++ +L+++FIL+ I+ EV I LF+
Sbjct: 58 IVGSIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAIL-----------LFVY 106
Query: 123 KQMLERYQNNSPPNNDDQWKNNGVTKT-WDRLMLQDNCCGVNGPSDW 168
+Q L Y ++ ++ ++ TK WD + CCG+NG SDW
Sbjct: 107 EQKLNEYVAKGLTDSIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDW 153
>gi|50511934 transmembrane 4 superfamily member 17 isoform b [Homo
sapiens]
Length = 329
Score = 53.9 bits (128), Expect = 1e-07
Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 24/223 (10%)
Query: 8 VRCFQGLLIFG-NVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVG 66
V C +FG N++ G A ++ ++ L + TD + W+ + VG
Sbjct: 13 VGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGL-DPVWLFVVVG 71
Query: 67 ICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTP--NLFLKQ 124
+ L G +G ++ + +L + + + +++ E+A+ I A +D+ NLF+
Sbjct: 72 GVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNLFINN 131
Query: 125 MLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADY 184
++ Y+++ N + + W +CCG GP+DW T+ N +
Sbjct: 132 NVKAYRDDIDLQNLIDFAQ----EYW-------SCCGARGPNDWNLNIYFNCTDLNPSRE 180
Query: 185 PW--PRQCCVMNNLKEPLNLEA-------CKLGVPGFYHNQGC 218
P CCV + ++ LN + +L GF H +GC
Sbjct: 181 RCGVPFSCCVRDPAEDVLNTQCGYDVRLKLELEQQGFIHTKGC 223
>gi|5729941 tetraspanin 9 [Homo sapiens]
Length = 239
Score = 53.5 bits (127), Expect = 2e-07
Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 37/248 (14%)
Query: 10 CFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGICL 69
C + ++ N+I CG L I+ Q + + + AA + I +G +
Sbjct: 8 CLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPS---LSAANLVIAIGTIV 64
Query: 70 FCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLF--LKQMLE 127
LG +G +K ++ +LL++FI++ ++ E+ I D N LK+ L
Sbjct: 65 MVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLKEGLL 124
Query: 128 RYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADYPWP 187
Y + N G+ W+ + + CCGV +DW EN P
Sbjct: 125 LYHTEN---------NVGLKNAWNIIQAEMRCCGVTDYTDWYPVLG----ENT-----VP 166
Query: 188 RQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELIS--GPMNRHAWGVAWFGFAILCWTF 245
+CC+ N+ + C GCYE + N+H G +C
Sbjct: 167 DRCCMENS-------QGCGRNATTPLWRTGCYEKVKMWFDDNKHVLGTVG-----MCILI 214
Query: 246 WVLLGTMF 253
+LG F
Sbjct: 215 MQILGMAF 222
>gi|21264578 tetraspan 1 [Homo sapiens]
Length = 241
Score = 53.1 bits (126), Expect = 2e-07
Identities = 51/220 (23%), Positives = 88/220 (40%), Gaps = 27/220 (12%)
Query: 8 VRCF---QGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDND--DIYGAAWIG 62
++CF + ++I N++I CG AL A I+ D S + + +
Sbjct: 1 MQCFSFIKTMMILFNLLIFLCGAALLAVGIWVSIDGASFLKIFGPLSSSAMQFVNVGYFL 60
Query: 63 IFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITA---ATQQDFFTPN 119
I G+ +F L LG G S+ L+ +F ++ +++ EVA+ + A T + F
Sbjct: 61 IAAGVVVFALGFLGCYGAKTESKCALVTFFFILLLIFIAEVAAAVVALVYTTMAEHFLTL 120
Query: 120 LFLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTEN 179
L + P D T+ W+ M CCG +D++ S + EN
Sbjct: 121 LVV-----------PAIKKDYGSQEDFTQVWNTTMKGLKCCGFTNYTDFE--DSPYFKEN 167
Query: 180 NDADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCY 219
+ +P CC +N+ N E C +GC+
Sbjct: 168 S----AFPPFCC-NDNVTNTAN-ETCTKQKAHDQKVEGCF 201
>gi|190194420 tetraspanin 14 isoform 1 [Homo sapiens]
Length = 270
Score = 52.8 bits (125), Expect = 3e-07
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 13/202 (6%)
Query: 5 NSTVRCFQGLLIFG-NVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGI 63
N+ V C+ L+F N+I G+ ++ S++ L L + T I + +
Sbjct: 8 NAKVSCWYKYLLFSYNIIFWLAGVVFLGVGLWAWSEKGVLSDLTKVTRMHGIDPVVLV-L 66
Query: 64 FVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLK 123
VG+ +F L G VG ++ + +L + + +++ E+A + A QD+
Sbjct: 67 MVGVVMFTLGFAGCVGALRENICLLNFFCGTIVLIFFLELAVAVLAFLFQDWVRD----- 121
Query: 124 QMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDW--QKYTSAFRTENND 181
+ E +++N DD N + D L + CCG GP DW Y + +
Sbjct: 122 RFREFFESNIKSYRDDIDLQNLI----DSLQKANQCCGAYGPEDWDLNVYFNCSGASYSR 177
Query: 182 ADYPWPRQCCVMNNLKEPLNLE 203
P CCV + ++ +N +
Sbjct: 178 EKCGVPFSCCVPDPAQKVVNTQ 199
>gi|87159824 CD151 antigen [Homo sapiens]
Length = 253
Score = 52.4 bits (124), Expect = 4e-07
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 10 CFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGICL 69
C + LL N G+A+ A I+ ++ + LL + A+I + G +
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLAS---GTYLATAYILVVAGTVV 71
Query: 70 FCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLKQMLERY 129
VLG K R +L YFIL+ I++ E+ + I A + N LK+ L+
Sbjct: 72 MVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAY--YQQLNTELKENLK-- 127
Query: 130 QNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQ 169
++ Q + VT D+L + +CCG N DW+
Sbjct: 128 --DTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWR 165
>gi|87159822 CD151 antigen [Homo sapiens]
Length = 253
Score = 52.4 bits (124), Expect = 4e-07
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 10 CFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGICL 69
C + LL N G+A+ A I+ ++ + LL + A+I + G +
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLAS---GTYLATAYILVVAGTVV 71
Query: 70 FCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLKQMLERY 129
VLG K R +L YFIL+ I++ E+ + I A + N LK+ L+
Sbjct: 72 MVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAY--YQQLNTELKENLK-- 127
Query: 130 QNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQ 169
++ Q + VT D+L + +CCG N DW+
Sbjct: 128 --DTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWR 165
>gi|21237751 CD151 antigen [Homo sapiens]
Length = 253
Score = 52.4 bits (124), Expect = 4e-07
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 10 CFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGICL 69
C + LL N G+A+ A I+ ++ + LL + A+I + G +
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLAS---GTYLATAYILVVAGTVV 71
Query: 70 FCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLKQMLERY 129
VLG K R +L YFIL+ I++ E+ + I A + N LK+ L+
Sbjct: 72 MVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAY--YQQLNTELKENLK-- 127
Query: 130 QNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQ 169
++ Q + VT D+L + +CCG N DW+
Sbjct: 128 --DTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWR 165
>gi|21237748 CD151 antigen [Homo sapiens]
Length = 253
Score = 52.4 bits (124), Expect = 4e-07
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 10 CFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGICL 69
C + LL N G+A+ A I+ ++ + LL + A+I + G +
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLAS---GTYLATAYILVVAGTVV 71
Query: 70 FCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLKQMLERY 129
VLG K R +L YFIL+ I++ E+ + I A + N LK+ L+
Sbjct: 72 MVTGVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAY--YQQLNTELKENLK-- 127
Query: 130 QNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQ 169
++ Q + VT D+L + +CCG N DW+
Sbjct: 128 --DTMTKRYHQPGHEAVTSAVDQLQQEFHCCGSNNSQDWR 165
>gi|122937466 tetraspanin 11 [Homo sapiens]
Length = 253
Score = 52.4 bits (124), Expect = 4e-07
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 11/178 (6%)
Query: 14 LLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGICLFCLS 73
LL N G A+ A I+ + ++ +L ++ +A+I IF G+ +
Sbjct: 19 LLFVFNFFFWVGGAAVLAVGIWTLVEKSGYLSVLASST---FAASAYILIFAGVLVMVTG 75
Query: 74 VLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLKQMLERYQNNS 133
LG I+ + L YF L+ +++ E+ + + A L L+++ N +
Sbjct: 76 FLGFGAILWERKGCLSTYFCLLLVIFLVELVAGVLAHVYYQR------LSDELKQHLNRT 129
Query: 134 PPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADYPWPRQCC 191
N Q +T + DRL CCG N +DWQ T E P CC
Sbjct: 130 LAENYGQPGATQITASVDRLQQDFKCCGSNSSADWQHSTYILLREAEGRQV--PDSCC 185
>gi|54859560 transmembrane 4 superfamily member 17 isoform a [Homo
sapiens]
Length = 332
Score = 52.0 bits (123), Expect = 5e-07
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 27/226 (11%)
Query: 8 VRCFQGLLIFG-NVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVG 66
V C +FG N++ G A ++ ++ L + TD + W+ + VG
Sbjct: 13 VGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGL-DPVWLFVVVG 71
Query: 67 ICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTP--NLFLKQ 124
+ L G +G ++ + +L + + + +++ E+A+ I A +D+ NLF+
Sbjct: 72 GVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNLFINN 131
Query: 125 MLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADY 184
++ Y+++ N + + W +CCG GP+DW T+ N +
Sbjct: 132 NVKAYRDDIDLQNLIDFAQ----EYW-------SCCGARGPNDWNLNIYFNCTDLNPSRE 180
Query: 185 PW--PRQCCVMNNLKEPLN----------LEACKLGVPGFYHNQGC 218
P CCV + ++ LN L +L GF H +GC
Sbjct: 181 RCGVPFSCCVRDPAEDVLNTQCGYDVRLKLVRGELEQQGFIHTKGC 226
>gi|54859505 transmembrane 4 superfamily member 17 isoform c [Homo
sapiens]
Length = 266
Score = 52.0 bits (123), Expect = 5e-07
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 27/226 (11%)
Query: 8 VRCFQGLLIFG-NVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVG 66
V C +FG N++ G A ++ ++ L + TD + W+ + VG
Sbjct: 13 VGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGGL-DPVWLFVVVG 71
Query: 67 ICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTP--NLFLKQ 124
+ L G +G ++ + +L + + + +++ E+A+ I A +D+ NLF+
Sbjct: 72 GVMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDWIRDQLNLFINN 131
Query: 125 MLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADY 184
++ Y+++ N + + W +CCG GP+DW T+ N +
Sbjct: 132 NVKAYRDDIDLQNLIDFAQ----EYW-------SCCGARGPNDWNLNIYFNCTDLNPSRE 180
Query: 185 PW--PRQCCVMNNLKEPLN----------LEACKLGVPGFYHNQGC 218
P CCV + ++ LN L +L GF H +GC
Sbjct: 181 RCGVPFSCCVRDPAEDVLNTQCGYDVRLKLVRGELEQQGFIHTKGC 226
>gi|4502693 CD9 antigen [Homo sapiens]
Length = 228
Score = 49.7 bits (117), Expect = 3e-06
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 10/158 (6%)
Query: 9 RCFQGLLIFGNVIIGCCGIALTAECIF--FVSDQHSLYPLLEATDNDDIYGAAWIGIFVG 66
+C + LL N I GIA+ A ++ F S S++ +N Y +I I G
Sbjct: 8 KCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQETNNNNSSFYTGVYILIGAG 67
Query: 67 ICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLKQML 126
+ + LG G ++ S+ +L +F + +++A E+A+ I + +D +K++
Sbjct: 68 ALMMLVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEIAAAIWGYSHKD-----EVIKEVQ 122
Query: 127 ERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNG 164
E Y++ N + K+ +T + NCCG+ G
Sbjct: 123 EFYKDT---YNKLKTKDEPQRETLKAIHYALNCCGLAG 157
>gi|4502663 CD37 antigen isoform A [Homo sapiens]
Length = 281
Score = 48.1 bits (113), Expect = 7e-06
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 66 GICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNL--FLK 123
GI +++LG VG +K R +L YF ++ +++A ++ I +TQ+ +L ++
Sbjct: 65 GIFTMGIALLGCVGALKELRCLLGLYFGMLLLLFATQITLGILISTQRAQLERSLRDVVE 124
Query: 124 QMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDW 168
+ +++Y N + ++WD + Q CCG + P DW
Sbjct: 125 KTIQKYGTNP--------EETAAEESWDYVQFQLRCCGWHYPQDW 161
>gi|5032201 transmembrane 4 superfamily member 8 isoform 1 [Homo
sapiens]
Length = 253
Score = 47.4 bits (111), Expect = 1e-05
Identities = 50/232 (21%), Positives = 94/232 (40%), Gaps = 31/232 (13%)
Query: 14 LLIFGNVII-GCCGI-ALTAECIFFVSDQHSLYPLLEATDNDDIYGA--AWIGIFVGICL 69
+L+F N+I G GI +F D + + +D+Y A + I VG L
Sbjct: 12 VLVFLNLIFWGAAGILCYVGAYVFITYDDYDHF-------FEDVYTLIPAVVIIAVGALL 64
Query: 70 FCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNL--FLKQMLE 127
F + ++G ++ SR L + I++ +V+ EV + + + ++++ +
Sbjct: 65 FIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYK 124
Query: 128 RYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADYPWP 187
Y +P + ++ D + Q +CCG++ SDW+ T F+ N + P
Sbjct: 125 TYNGTNP---------DAASRAIDYVQRQLHCCGIHNYSDWEN-TDWFKETKNQS---VP 171
Query: 188 RQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFA 239
CC +E + L P + +GC L+ + V W A
Sbjct: 172 LSCC-----RETASNCNGSLAHPSDLYAEGCEALVVKKLQEIMMHVIWAALA 218
>gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens]
Length = 245
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/241 (18%), Positives = 93/241 (38%), Gaps = 37/241 (15%)
Query: 8 VRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGI 67
+ CF+ +L+ I G+ L A I+ + + LL N+ ++ I G
Sbjct: 14 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLL----NEKATNVPFVLIATGT 69
Query: 68 CLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLKQMLE 127
+ L G ++S +L Y + + +V+ E+ + I +F ++
Sbjct: 70 VIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIVGF---------VFRHEIKN 120
Query: 128 RYQNNSPP-----NNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDA 182
++NN N+ ++++ V K + L +CCGV DW N +
Sbjct: 121 SFKNNYEKALKQYNSTGDYRSHAVDKIQNTL----HCCGVTDYRDW-------TDTNYYS 169
Query: 183 DYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFAILC 242
+ +P+ CC + + + + +N+GC+ + + VA F + C
Sbjct: 170 EKGFPKSCCKLEDCTPQRDADK--------VNNEGCFIKVMTIIESEMGVVAGISFGVAC 221
Query: 243 W 243
+
Sbjct: 222 F 222
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.141 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,495,047
Number of Sequences: 37866
Number of extensions: 461556
Number of successful extensions: 1141
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 54
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.