Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD53 Sequence: fasta or formatted (219aa) NCBI GI: 10834972
Description:

CD53 antigen

Referenced in:

Integrins
Hematopoiesis and Erythrocytes

Other entries for this name:
alt mRNA [219aa] CD53 antigen
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         10           2
 C cysteine            5.5         12           2
 D aspartate           2.7          6           1
 E glutamate           2.7          6           1
 F phenylalanine       7.3         16           3
 G glycine             7.8         17           1
 H histidine           2.3          5           1
 I isoleucine         10.0         22           2
 K lysine              4.6         10           1
 L leucine            15.1         33           3
 M methionine          2.7          6           1
 N asparagine          5.0         11           2
 P proline             1.8          4           2
 Q glutamine           2.3          5           1
 R arginine            1.4          3           1
 S serine              8.2         18           2
 T threonine           4.6         10           1
 V valine              6.4         14           2
 W tryptophan          1.8          4           1
 Y tyrosine            3.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD53 antigen 
CD53                  1.000   CD53 antigen 
TSPAN9                0.402   tetraspanin 9 
TSPAN4                0.367   tetraspanin 4 isoform a 
TSPAN4                0.367   tetraspanin 4 isoform a 
TSPAN4                0.367   tetraspanin 4 isoform a 
TSPAN4                0.367   tetraspanin 4 isoform a 
TSPAN4                0.367   tetraspanin 4 isoform a 
TSPAN4                0.367   tetraspanin 4 isoform a 
TSPAN4                0.242   tetraspanin 4 isoform b 
CD82                  0.240   CD82 antigen isoform 1 
TSPAN8                0.214   transmembrane 4 superfamily member 3 
TSPAN18               0.209   tetraspanin 18 isoform 2 
CD151                 0.202   CD151 antigen 
CD151                 0.202   CD151 antigen 
CD151                 0.202   CD151 antigen 
CD151                 0.202   CD151 antigen 
TSPAN18               0.198   tetraspanin 18 isoform 1 
CD63                  0.184   CD63 antigen isoform A 
TSPAN3                0.184   transmembrane 4 superfamily member 8 isoform 1 
CD9                   0.176   CD9 antigen 
CD81                  0.176   CD81 antigen 
TSPAN1                0.176   tetraspan 1 
TSPAN5                0.176   transmembrane 4 superfamily member 9 
CD37                  0.176   CD37 antigen isoform A 
CD82                  0.167   CD82 antigen isoform 2 
TSPAN11               0.167   tetraspanin 11 
CD63                  0.167   CD63 antigen isoform B 
TSPAN33               0.162   tetraspanin 33 
TSPAN2                0.162   tetraspan 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press