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Search of human proteins with 49472830
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49472830 hypothetical protein LOC116224 [Homo sapiens]
(287 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49472830 hypothetical protein LOC116224 [Homo sapiens] 576 e-165
gi|40255094 hypothetical protein LOC159090 [Homo sapiens] 296 2e-80
gi|20270387 hypothetical protein LOC159091 [Homo sapiens] 134 7e-32
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 39 0.005
gi|4503493 early growth response 1 [Homo sapiens] 37 0.020
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 37 0.020
gi|239748366 PREDICTED: hypothetical protein XP_002346629 [Homo ... 36 0.034
gi|119943102 CREB binding protein isoform b [Homo sapiens] 35 0.058
gi|119943104 CREB binding protein isoform a [Homo sapiens] 35 0.058
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 35 0.076
gi|20162554 Kruppel-like factor 14 [Homo sapiens] 34 0.13
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 34 0.17
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 33 0.22
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 33 0.22
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 33 0.22
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 33 0.22
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 33 0.22
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 33 0.22
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 33 0.22
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens] 33 0.22
gi|4502565 calpain, small subunit 1 [Homo sapiens] 33 0.22
gi|51599151 calpain, small subunit 1 [Homo sapiens] 33 0.22
gi|53829370 neuralized homolog 4 isoform 1 [Homo sapiens] 33 0.22
gi|53829368 neuralized homolog 4 isoform 2 [Homo sapiens] 33 0.22
gi|197245444 hypothetical protein LOC57464 isoform b [Homo sapiens] 33 0.22
gi|55742705 hypothetical protein LOC57464 isoform a [Homo sapiens] 33 0.22
gi|120587019 zinc finger protein 318 [Homo sapiens] 33 0.22
gi|62821787 COBL-like 1 [Homo sapiens] 33 0.22
gi|238624132 large conductance calcium-activated potassium chann... 33 0.29
gi|238624130 large conductance calcium-activated potassium chann... 33 0.29
>gi|49472830 hypothetical protein LOC116224 [Homo sapiens]
Length = 287
Score = 576 bits (1484), Expect = e-165
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MAQEKMELDLELPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR 60
MAQEKMELDLELPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR
Sbjct: 1 MAQEKMELDLELPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR 60
Query: 61 NSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEES 120
NSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEES
Sbjct: 61 NSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEES 120
Query: 121 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTT 180
FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTT
Sbjct: 121 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTT 180
Query: 181 RFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 240
RFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS
Sbjct: 181 RFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 240
Query: 241 SDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPLDELSSK 287
SDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPLDELSSK
Sbjct: 241 SDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPLDELSSK 287
>gi|40255094 hypothetical protein LOC159090 [Homo sapiens]
Length = 248
Score = 296 bits (757), Expect = 2e-80
Identities = 175/290 (60%), Positives = 196/290 (67%), Gaps = 45/290 (15%)
Query: 1 MAQEKMELDLELPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR 60
MAQEKMELDLE P T GG LRRS+SAPLIHGLSD S VFQ RR
Sbjct: 1 MAQEKMELDLE--PDTSY----------GGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRR 48
Query: 61 NSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEES 120
NSTT SRH L EEG+D++NRET HERE+QTAMQIS SW+ES
Sbjct: 49 NSTTIMSRHSL-------------------EEGLDMVNRETAHEREMQTAMQISQSWDES 89
Query: 121 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPS 177
SLSD+D EK SPKRIDF PVSPAPSPTRG GK FVSS+GLPPSP+PS
Sbjct: 90 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKM--------FVSSSGLPPSPVPS 141
Query: 178 PTTRFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGV 237
P RF++RRSQSP+ CIRPSVLGPLKRK EMETE QPKR FQG TNMLS D AQLSD
Sbjct: 142 PR-RFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSS 200
Query: 238 CVSSDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPLDELSSK 287
C SD LDG+SSS+G S + AK S T +SPV+ + + S FI +D+LS K
Sbjct: 201 C--SDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFILMDDLSPK 248
>gi|20270387 hypothetical protein LOC159091 [Homo sapiens]
Length = 152
Score = 134 bits (338), Expect = 7e-32
Identities = 81/159 (50%), Positives = 97/159 (61%), Gaps = 10/159 (6%)
Query: 1 MAQEKMELDLE-LPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSAR 59
MAQEKM+L + LP T + G LRR NSAPLI+GL S V QA+ R
Sbjct: 1 MAQEKMKLGFKSLPSST---------TADGNILRRVNSAPLINGLGFNSQVLQADMLRIR 51
Query: 60 RNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEE 119
N TTF +R LLLP P SRLHQIKQEE MDLINRET+ E ++Q+ +QISHSWEE
Sbjct: 52 TNRTTFRNRRSLLLPPPPFHGSISRLHQIKQEEAMDLINRETMSEWKLQSEIQISHSWEE 111
Query: 120 SFSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFS 158
L+DN ++KS+S K ID PVS S + GK S
Sbjct: 112 GLKLNDNGLQKSSSLKCIDLTPVSSMASSIKKTGKSTSS 150
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 38.9 bits (89), Expect = 0.005
Identities = 64/283 (22%), Positives = 98/283 (34%), Gaps = 22/283 (7%)
Query: 5 KMELDLELPPGTGGSPAEGGGSGGGGGL-----RRSNSAPLIHGLSDTSPVFQAEAPSAR 59
KM+ G GG GGGS GGGG RRS SA + +R
Sbjct: 183 KMKTSRHSSGGGGGGAGGGGGSMGGGGSGFISGRRSRSASPSTQQEKHPTHHERGQKKSR 242
Query: 60 RNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWE- 118
++ +H P SP + + + + + + HE Q + S +
Sbjct: 243 KDKERLKQKH-KKRPESPPSILTPPVVPTADKVSSS-ASSSSHHEASTQETSESSRESKG 300
Query: 119 ---ESFSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPI 175
S SLS + S+ F S + S + F P++ S SS P
Sbjct: 301 KKSSSHSLSHKGKKLSSGKGVSSFTSASSSSSSSSSSSGGPFQPAVSSLQSSPDFSAFPK 360
Query: 176 PSPTTRFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGI-------TNMLSSD 228
+ +P PS P K ++ ++ K F G T SS
Sbjct: 361 LEQPEEDKYSKPTAPAPSAPPSPSAPEPPKADL---FEQKVVFSGFGPIMRFSTTTSSSG 417
Query: 229 VAQLSDPGVCVSSDTLDGNSSSAGSSCNSPAKVSTTTDSPVSP 271
A+ PG S + G+ +SAG+ PA +T + +P
Sbjct: 418 RARAPSPG-DYKSPHVTGSGASAGTHKRMPALSATPVPADETP 459
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 37.0 bits (84), Expect = 0.020
Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 23/172 (13%)
Query: 13 PPGTGG---SPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPSRH 69
P G+G S + GGG GGGGG S+S+ + +DT E P + +FP
Sbjct: 55 PEGSGSNSSSSSSGGGGGGGGGSNSSSSSSTFNPQADT-----GEQPYEHLTAESFPD-- 107
Query: 70 GLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHS-WEES-FSLSDND 127
+ L V + +S Q + + R + ++ A ++ W E FSL
Sbjct: 108 -ISLNNEKVLVETSYPSQTTRLPPITYTGRFS-----LEPAPNSGNTLWPEPLFSLVSGL 161
Query: 128 VEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPT 179
V + P S APSP SP L V SN P +PT
Sbjct: 162 VSMTNPP-----ASSSSAPSPAASSASASQSPPLSCAVPSNDSSPIYSAAPT 208
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 37.0 bits (84), Expect = 0.020
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 157 FSPSLQSFVSSNGLPPSPIPS-PTTRFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPK 215
++PS F S G PP+P PS P R ++ + SV GP Y+P
Sbjct: 284 YAPSTAQFAPSPGQPPAPSPSYPGHRLPLQQGMTQ----SLSVPGP------TGLHYKPT 333
Query: 216 RFFQGITNMLSSDVAQLSDPGVCVSSDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQ-A 274
F G + S PG+ + ++ G SS +P +++ +SP Q
Sbjct: 334 EQFNGQGASFNGGSVSYSQPGLSGPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQEV 393
Query: 275 ASPFIP 280
SPF+P
Sbjct: 394 KSPFLP 399
>gi|239748366 PREDICTED: hypothetical protein XP_002346629 [Homo
sapiens]
Length = 120
Score = 36.2 bits (82), Expect = 0.034
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 144 PAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFTTRRSQSPINCIRPSVLGPLK 203
PAP P RG+G C + + + V G PP TR R+ Q+P
Sbjct: 21 PAP-PQRGLGSSCAANTTLA-VLRGGRPPRETLHDVTRPDRRKEQAP------------- 65
Query: 204 RKCEMETEYQPKRFF---QGITNMLSSDVAQLSDPGVCVSSDTLDGNS 248
+ C+M+ P+R+ Q + + V +PG CV++ +L G S
Sbjct: 66 QSCKMQERSHPRRWLTKQQRSSKRIPVPVWGQFNPGPCVTTASLFGGS 113
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 35.4 bits (80), Expect = 0.058
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 133 SPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFTTRRSQSPIN 192
+P + F+P + PS + + P Q+ VS +P + +P+P + SQ P
Sbjct: 749 APAQSQFLPQNQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCP 808
Query: 193 CIRPSVLGPLKRKCEME--------------TEYQPKRFFQGITNMLSSDVAQLSDPGVC 238
+ S L P T QP Q T + SS PG
Sbjct: 809 PVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTPG-- 866
Query: 239 VSSDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASP 277
S + S+ + A+V+ +PV P A+P
Sbjct: 867 -SVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATP 904
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 35.4 bits (80), Expect = 0.058
Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 133 SPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTTRFTTRRSQSPIN 192
+P + F+P + PS + + P Q+ VS +P + +P+P + SQ P
Sbjct: 787 APAQSQFLPQNQFPSSSGAMSVGMGQPPAQTGVSQGQVPGAALPNPLNMLGPQASQLPCP 846
Query: 193 CIRPSVLGPLKRKCEME--------------TEYQPKRFFQGITNMLSSDVAQLSDPGVC 238
+ S L P T QP Q T + SS PG
Sbjct: 847 PVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSGQTPTPTPG-- 904
Query: 239 VSSDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASP 277
S + S+ + A+V+ +PV P A+P
Sbjct: 905 -SVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSVATP 942
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 35.0 bits (79), Expect = 0.076
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 15 GTGGSPAEGGGSGGGGGLRRSNSAPLIHGLS 45
G GGS GGGSGGGGG S+S PL LS
Sbjct: 36 GGGGSGGGGGGSGGGGGGLGSSSHPLSSLLS 66
>gi|20162554 Kruppel-like factor 14 [Homo sapiens]
Length = 323
Score = 34.3 bits (77), Expect = 0.13
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 15/175 (8%)
Query: 14 PGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPSRHGLLL 73
P G+PA GG GG + AP +D +P ++ P+A+R+ FP
Sbjct: 154 PAAPGAPAASGGFSGGA--LGAGPAP----AADQAPRRRSVTPAAKRHQCPFPGCTKAYY 207
Query: 74 PASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQI-SHSWEESFSLSDNDVEKSA 132
+S ++ H R H ++ D ++ + R + A +H+ E+ FS + S
Sbjct: 208 KSSHLKSH-QRTHTGERPFSCDWLDCDKKFTRSDELARHYRTHTGEKRFSCPLCPKQFSR 266
Query: 133 SPKRIDFIPVSPAPSPT----RGIGK-QCFSPSLQSFV--SSNGLPPSPIPSPTT 180
S P P RG + P L S V S++G P P PS TT
Sbjct: 267 SDHLTKHARRHPTYHPDMIEYRGRRRTPRIDPPLTSEVESSASGSGPGPAPSFTT 321
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 33.9 bits (76), Expect = 0.17
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 7 ELDLELPPGTGGSPAEGGGSGGGGG 31
E+ L +P G GG + GGG GGGGG
Sbjct: 3499 EMVLHVPTGGGGGGSGGGGGGGGGG 3523
Score = 30.8 bits (68), Expect = 1.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 4 EKMELDLELPPGTGGSPAEGGGSGGGGG 31
++M L + G GGS GGG GGGGG
Sbjct: 3498 QEMVLHVPTGGGGGGSGGGGGGGGGGGG 3525
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 33.5 bits (75), Expect = 0.22
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 20/125 (16%)
Query: 13 PPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTS------------------PVFQAE 54
PPG G P G GG + P+ + + TS P
Sbjct: 262 PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPA 321
Query: 55 APSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQIS 114
A T P + P P+ SR+ I++ G+D + E + ERE + +I+
Sbjct: 322 ASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV--EILQEREYRLQARIA 379
Query: 115 HSWEE 119
H +E
Sbjct: 380 HRIQE 384
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 33.5 bits (75), Expect = 0.22
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 20/125 (16%)
Query: 13 PPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTS------------------PVFQAE 54
PPG G P G GG + P+ + + TS P
Sbjct: 262 PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPA 321
Query: 55 APSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQIS 114
A T P + P P+ SR+ I++ G+D + E + ERE + +I+
Sbjct: 322 ASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV--EILQEREYRLQARIA 379
Query: 115 HSWEE 119
H +E
Sbjct: 380 HRIQE 384
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 33.5 bits (75), Expect = 0.22
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 20/125 (16%)
Query: 13 PPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTS------------------PVFQAE 54
PPG G P G GG + P+ + + TS P
Sbjct: 262 PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPA 321
Query: 55 APSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQIS 114
A T P + P P+ SR+ I++ G+D + E + ERE + +I+
Sbjct: 322 ASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV--EILQEREYRLQARIA 379
Query: 115 HSWEE 119
H +E
Sbjct: 380 HRIQE 384
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 33.5 bits (75), Expect = 0.22
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 20/125 (16%)
Query: 13 PPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTS------------------PVFQAE 54
PPG G P G GG + P+ + + TS P
Sbjct: 262 PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPA 321
Query: 55 APSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQIS 114
A T P + P P+ SR+ I++ G+D + E + ERE + +I+
Sbjct: 322 ASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV--EILQEREYRLQARIA 379
Query: 115 HSWEE 119
H +E
Sbjct: 380 HRIQE 384
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 33.5 bits (75), Expect = 0.22
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 20/125 (16%)
Query: 13 PPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTS------------------PVFQAE 54
PPG G P G GG + P+ + + TS P
Sbjct: 262 PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPA 321
Query: 55 APSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQIS 114
A T P + P P+ SR+ I++ G+D + E + ERE + +I+
Sbjct: 322 ASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV--EILQEREYRLQARIA 379
Query: 115 HSWEE 119
H +E
Sbjct: 380 HRIQE 384
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.22
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 20/125 (16%)
Query: 13 PPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTS------------------PVFQAE 54
PPG G P G GG + P+ + + TS P
Sbjct: 262 PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPA 321
Query: 55 APSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQIS 114
A T P + P P+ SR+ I++ G+D + E + ERE + +I+
Sbjct: 322 ASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV--EILQEREYRLQARIA 379
Query: 115 HSWEE 119
H +E
Sbjct: 380 HRIQE 384
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.22
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 20/125 (16%)
Query: 13 PPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTS------------------PVFQAE 54
PPG G P G GG + P+ + + TS P
Sbjct: 262 PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPA 321
Query: 55 APSARRNSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQIS 114
A T P + P P+ SR+ I++ G+D + E + ERE + +I+
Sbjct: 322 ASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV--EILQEREYRLQARIA 379
Query: 115 HSWEE 119
H +E
Sbjct: 380 HRIQE 384
>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
Length = 450
Score = 33.5 bits (75), Expect = 0.22
Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 28/161 (17%)
Query: 5 KMELDLELP-PGTGGSPAEGG----------GSGGGGGLRRSNSAPLIHGL------SDT 47
K E +LELP PG GG A+ G + GGGG++ P HG +
Sbjct: 23 KRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGGMQNEPLTPGYHGFPARDSQGNQ 82
Query: 48 SPVFQAEAPSARRNSTTFPSRHGLLLP-----------ASPVRMHSSRLHQIKQEEGMDL 96
P +A + FP +P A H+ L+ Q G
Sbjct: 83 EPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQS 142
Query: 97 INRETVHEREVQTAMQISHSWEESFSLSDNDVEKSASPKRI 137
N + + T ++S + S + E ++PKR+
Sbjct: 143 SNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRL 183
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 33.5 bits (75), Expect = 0.22
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 15 GTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSAR 59
G GG GGG GGGGG +I +S+ + + E P R
Sbjct: 40 GGGGGGGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPR 84
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 33.5 bits (75), Expect = 0.22
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 15 GTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSAR 59
G GG GGG GGGGG +I +S+ + + E P R
Sbjct: 40 GGGGGGGGGGGGGGGGGTAMRILGGVISAISEAAAQYNPEPPPPR 84
>gi|53829370 neuralized homolog 4 isoform 1 [Homo sapiens]
Length = 1562
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 15 GTGGSPAEGGGSG----GGGGLRRSNSAP----------LIHGLSDTSPVFQAEAPSARR 60
G+GGS GGG G GGGG S S P +H + A +ARR
Sbjct: 4 GSGGSGGSGGGPGPGPGGGGGPSGSGSGPGSNGGLGSGGELHPRTGRLVSLSACGRTARR 63
Query: 61 NSTTFPSRHGLLLPASPVR 79
HGL+L P+R
Sbjct: 64 QQPGQEFNHGLVLSREPLR 82
>gi|53829368 neuralized homolog 4 isoform 2 [Homo sapiens]
Length = 1560
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 15 GTGGSPAEGGGSG----GGGGLRRSNSAP----------LIHGLSDTSPVFQAEAPSARR 60
G+GGS GGG G GGGG S S P +H + A +ARR
Sbjct: 4 GSGGSGGSGGGPGPGPGGGGGPSGSGSGPGSNGGLGSGGELHPRTGRLVSLSACGRTARR 63
Query: 61 NSTTFPSRHGLLLPASPVR 79
HGL+L P+R
Sbjct: 64 QQPGQEFNHGLVLSREPLR 82
>gi|197245444 hypothetical protein LOC57464 isoform b [Homo
sapiens]
Length = 758
Score = 33.5 bits (75), Expect = 0.22
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 14 PGTGGSPAEGGGSGGGGG 31
PGTGG PA G G+GGG G
Sbjct: 7 PGTGGPPANGNGNGGGKG 24
>gi|55742705 hypothetical protein LOC57464 isoform a [Homo
sapiens]
Length = 834
Score = 33.5 bits (75), Expect = 0.22
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 14 PGTGGSPAEGGGSGGGGG 31
PGTGG PA G G+GGG G
Sbjct: 7 PGTGGPPANGNGNGGGKG 24
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 33.5 bits (75), Expect = 0.22
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 17 GGSPAEGGGSGGGGG-LRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPS-RHGLLLP 74
GG P G SG G RRS+ P G S +P + +PS R PS G +
Sbjct: 20 GGGPRSGRSSGSSSGPARRSSPPPPPSGSSSRTPARRPRSPSGHRGRRASPSPPRGRRVS 79
Query: 75 ASPVR 79
SP R
Sbjct: 80 PSPPR 84
>gi|62821787 COBL-like 1 [Homo sapiens]
Length = 1166
Score = 33.5 bits (75), Expect = 0.22
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 87 QIKQEEGMDLINRETVHEREVQTAMQ-----ISHSWEESFS--------LSDNDVEKS-A 132
+ K ++ M + ++ HE +TA+Q IS S EE +++ V S +
Sbjct: 792 EYKDDQDMHALGKKHTHENVKETAIQTEDSAISESPEEPLPNLKPKPNLRTEHQVPSSVS 851
Query: 133 SPKRIDFIPVSPAPSPTRGIGKQCFSPSLQ 162
SP P+ PAP TR G F+P+L+
Sbjct: 852 SPDDAMVSPLKPAPKMTRDTGTAPFAPNLE 881
>gi|238624132 large conductance calcium-activated potassium
channel subfamily M alpha member 1 isoform d [Homo
sapiens]
Length = 1219
Score = 33.1 bits (74), Expect = 0.29
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 15 GTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPS 67
G GG + GGG GGG LR S++ H D S + + S+ +S++ S
Sbjct: 6 GGGGGSSGGGGGGGGSSLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSS 58
>gi|238624130 large conductance calcium-activated potassium
channel subfamily M alpha member 1 isoform c [Homo
sapiens]
Length = 1236
Score = 33.1 bits (74), Expect = 0.29
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 15 GTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPS 67
G GG + GGG GGG LR S++ H D S + + S+ +S++ S
Sbjct: 6 GGGGGSSGGGGGGGGSSLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSS 58
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,408,156
Number of Sequences: 37866
Number of extensions: 776082
Number of successful extensions: 7873
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 6007
Number of HSP's gapped (non-prelim): 1513
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.