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Search of human proteins with 49472822
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|49472822 eukaryotic translation initiation factor 3, subunit
4 delta, 44kDa [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|49472822 eukaryotic translation initiation factor 3, subunit ... 655 0.0
gi|55956788 nucleolin [Homo sapiens] 60 2e-09
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 58 1e-08
gi|9558733 transformer-2 alpha [Homo sapiens] 58 1e-08
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 56 4e-08
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 56 4e-08
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 56 5e-08
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 56 5e-08
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 56 5e-08
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 56 5e-08
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 56 5e-08
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 56 5e-08
gi|123173757 RAVER1 [Homo sapiens] 56 5e-08
gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform... 55 6e-08
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 55 1e-07
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 54 1e-07
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 54 1e-07
gi|38201714 ELAV-like 1 [Homo sapiens] 54 1e-07
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 54 1e-07
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 54 1e-07
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 54 2e-07
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 53 4e-07
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 52 5e-07
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 52 5e-07
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 52 5e-07
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 52 5e-07
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 52 5e-07
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 52 5e-07
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 52 5e-07
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 52 7e-07
>gi|49472822 eukaryotic translation initiation factor 3, subunit 4
delta, 44kDa [Homo sapiens]
Length = 320
Score = 655 bits (1690), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MPTGDFDSKPSWADQVEEEGEDDKCVTSELLKGIPLATGDTSPEPELLPGAPLPPPKEVI 60
MPTGDFDSKPSWADQVEEEGEDDKCVTSELLKGIPLATGDTSPEPELLPGAPLPPPKEVI
Sbjct: 1 MPTGDFDSKPSWADQVEEEGEDDKCVTSELLKGIPLATGDTSPEPELLPGAPLPPPKEVI 60
Query: 61 NGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATT 120
NGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATT
Sbjct: 61 NGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATT 120
Query: 121 TVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQK 180
TVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQK
Sbjct: 121 TVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQK 180
Query: 181 ELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNAT 240
ELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNAT
Sbjct: 181 ELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNAT 240
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV
Sbjct: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
Query: 301 SGFGYDHLILNVEWAKPSTN 320
SGFGYDHLILNVEWAKPSTN
Sbjct: 301 SGFGYDHLILNVEWAKPSTN 320
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 60.5 bits (145), Expect = 2e-09
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 225 RGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAF 284
+G PN R+ + T+ V LSEDT E L+E F GS+ R + D+ TG SKGF F
Sbjct: 558 QGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGF 614
Query: 285 ISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
+ F+ EDA A + D + ++WAKP
Sbjct: 615 VDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 647
Score = 36.2 bits (82), Expect = 0.040
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 237 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 296
++ T+ ++NLS E LQE+F I G+SKG+AFI F EDA A
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEA 539
Query: 297 I 297
+
Sbjct: 540 L 540
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 232 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 291
+++ D T+ NL + +L+E+F I + +KD G+SKG A+I F
Sbjct: 386 SKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV--SKD---GKSKGIAYIEFKTEA 440
Query: 292 DAARAIAGVSGFGYD 306
DA + G D
Sbjct: 441 DAEKTFEEKQGTEID 455
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 58.2 bits (139), Expect = 1e-08
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 235 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294
A D + V LS DT E L+++F +G IS + + KD+ T +S+GF F++F +DA
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 295 RAIAGVSGFGYDHLILNVEWAKPSTN 320
A+ ++G D + V+ A S++
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSD 87
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 57.8 bits (138), Expect = 1e-08
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 216 PSLRDGASRRGESMQPNRR-------ADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 268
P R SR M RR D N + V LS T E DL+E+F +G +S +
Sbjct: 89 PEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGV 148
Query: 269 YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 315
+ D+ TG+S+GFAF+ F R +D+ A+ +G D + V+++
Sbjct: 149 NVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 56.2 bits (134), Expect = 4e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I V NLS + E+ L +LF PFG+++ + + +D TT + KGF F++ ++AA AIA +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 301 SGFGYDHLILNVEW 314
+G+ +L V +
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 53.1 bits (126), Expect = 3e-07
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 226 GESMQPNRRADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAF 284
G + N DD+ T + N L ++ + + + LF G I L +DK TGQS G+ F
Sbjct: 25 GPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGF 84
Query: 285 ISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 319
+++ DA +AI ++G + V +A+PS+
Sbjct: 85 VNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
Score = 45.4 bits (106), Expect = 7e-05
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ + +A + V+ L + + ++++LF +G I + D+ TG S+G FI F +
Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 290 REDAARAIAGVSG 302
R +A AI G++G
Sbjct: 176 RIEAEEAIKGLNG 188
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 56.2 bits (134), Expect = 4e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I V NLS + E+ L +LF PFG+++ + + +D TT + KGF F++ ++AA AIA +
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 301 SGFGYDHLILNVEW 314
+G+ +L V +
Sbjct: 339 NGYRLGERVLQVSF 352
Score = 53.1 bits (126), Expect = 3e-07
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 226 GESMQPNRRADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAF 284
G + N DD+ T + N L ++ + + + LF G I L +DK TGQS G+ F
Sbjct: 25 GPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGF 84
Query: 285 ISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 319
+++ DA +AI ++G + V +A+PS+
Sbjct: 85 VNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
Score = 45.4 bits (106), Expect = 7e-05
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ + +A + V+ L + + ++++LF +G I + D+ TG S+G FI F +
Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 290 REDAARAIAGVSG 302
R +A AI G++G
Sbjct: 176 RIEAEEAIKGLNG 188
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 55.8 bits (133), Expect = 5e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I V NLS D+ E+ L +LF PFG+++ + + +D T + KGF F++ ++AA AIA +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 301 SGFGYDHLILNVEW 314
+G+ +L V +
Sbjct: 359 NGYRLGDRVLQVSF 372
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 229 MQPNRRADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
MQ DD+ T + N L ++ + + + LF G I L +DK TGQS G+ F+++
Sbjct: 35 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94
Query: 288 HRREDAARAIAGVSGFGYDHLILNVEWAKPST 319
+DA +AI ++G + V +A+PS+
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Score = 46.2 bits (108), Expect = 4e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ + +A + V+ L + + +L++LF +G I + D+ TG S+G FI F +
Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 290 REDAARAIAGVSG 302
R +A AI G++G
Sbjct: 183 RIEAEEAIKGLNG 195
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 55.8 bits (133), Expect = 5e-08
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 233 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 292
+R+ D+ + V +LS + D++ F PFG IS + KD TG+SKG+ F+SF + D
Sbjct: 100 QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 159
Query: 293 AARAIAGVSGFGYDHLILNVEWA 315
A AI + G + WA
Sbjct: 160 AENAIQQMGGQWLGGRQIRTNWA 182
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 232 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 291
N+ + N T+ ++ E +++ F PFG I I + DK G++F+ F+ E
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHE 260
Query: 292 DAARAIAGVSGFGYDHLILNVEWAK 316
AA AI V+G + ++ W K
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 37.7 bits (86), Expect = 0.014
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
T+ V NLS D E + +LF G + D T + + F+ FH AA A+A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 300 VSGFGYDHLILNVEWA 315
++G + V WA
Sbjct: 66 MNGRKIMGKEVKVNWA 81
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 55.8 bits (133), Expect = 5e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I V NLS D+ E+ L +LF PFG+++ + + +D T + KGF F++ ++AA AIA +
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 301 SGFGYDHLILNVEW 314
+G+ +L V +
Sbjct: 348 NGYRLGDRVLQVSF 361
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 229 MQPNRRADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
MQ DD+ T + N L ++ + + + LF G I L +DK TGQS G+ F+++
Sbjct: 38 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 97
Query: 288 HRREDAARAIAGVSGFGYDHLILNVEWAKPST 319
+DA +AI ++G + V +A+PS+
Sbjct: 98 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 129
Score = 46.2 bits (108), Expect = 4e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ + +A + V+ L + + +L++LF +G I + D+ TG S+G FI F +
Sbjct: 126 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 185
Query: 290 REDAARAIAGVSG 302
R +A AI G++G
Sbjct: 186 RIEAEEAIKGLNG 198
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 55.8 bits (133), Expect = 5e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I V NLS D+ E+ L +LF PFG+++ + + +D T + KGF F++ ++AA AIA +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 301 SGFGYDHLILNVEW 314
+G+ +L V +
Sbjct: 345 NGYRLGDRVLQVSF 358
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 229 MQPNRRADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
MQ DD+ T + N L ++ + + + LF G I L +DK TGQS G+ F+++
Sbjct: 35 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94
Query: 288 HRREDAARAIAGVSGFGYDHLILNVEWAKPST 319
+DA +AI ++G + V +A+PS+
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Score = 46.2 bits (108), Expect = 4e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ + +A + V+ L + + +L++LF +G I + D+ TG S+G FI F +
Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 290 REDAARAIAGVSG 302
R +A AI G++G
Sbjct: 183 RIEAEEAIKGLNG 195
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 55.8 bits (133), Expect = 5e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I V NLS D+ E+ L +LF PFG+++ + + +D T + KGF F++ ++AA AIA +
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 301 SGFGYDHLILNVEW 314
+G+ +L V +
Sbjct: 362 NGYRLGDRVLQVSF 375
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 229 MQPNRRADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
MQ DD+ T + N L ++ + + + LF G I L +DK TGQS G+ F+++
Sbjct: 52 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 111
Query: 288 HRREDAARAIAGVSGFGYDHLILNVEWAKPST 319
+DA +AI ++G + V +A+PS+
Sbjct: 112 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 143
Score = 46.2 bits (108), Expect = 4e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ + +A + V+ L + + +L++LF +G I + D+ TG S+G FI F +
Sbjct: 140 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 199
Query: 290 REDAARAIAGVSG 302
R +A AI G++G
Sbjct: 200 RIEAEEAIKGLNG 212
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 55.8 bits (133), Expect = 5e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I V NLS D+ E+ L +LF PFG+++ + + +D T + KGF F++ ++AA AIA +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 301 SGFGYDHLILNVEW 314
+G+ +L V +
Sbjct: 345 NGYRLGDRVLQVSF 358
Score = 53.9 bits (128), Expect = 2e-07
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 229 MQPNRRADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287
MQ DD+ T + N L ++ + + + LF G I L +DK TGQS G+ F+++
Sbjct: 35 MQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 94
Query: 288 HRREDAARAIAGVSGFGYDHLILNVEWAKPST 319
+DA +AI ++G + V +A+PS+
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
Score = 46.2 bits (108), Expect = 4e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ + +A + V+ L + + +L++LF +G I + D+ TG S+G FI F +
Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 290 REDAARAIAGVSG 302
R +A AI G++G
Sbjct: 183 RIEAEEAIKGLNG 195
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 55.8 bits (133), Expect = 5e-08
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 238 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
+A + V NL + +EL RPFGS+ R +L + TGQSKG+ F + +++ AARA
Sbjct: 148 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAK 207
Query: 298 AGVSGFGYDHLILNVEW 314
+ + G L V W
Sbjct: 208 SDLLGKPLGPRTLYVHW 224
>gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform 1
[Homo sapiens]
Length = 156
Score = 55.5 bits (132), Expect = 6e-08
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 209 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 268
++ YV S RG++ + + + T+ V NLS T E + ELF G I +I
Sbjct: 10 RSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKI 69
Query: 269 YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 314
+ DK + GF F+ ++ R DA A+ ++G D I+ +W
Sbjct: 70 IMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 54.7 bits (130), Expect = 1e-07
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P + +++V NL+ T L+ +F +G + +Y+ +D+ T +S+GFAF+ FH
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 290 REDAARAIAGVSGFGYDHLILNVEWAK 316
+ DA A+ + G D L V+ A+
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMAR 91
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 54.3 bits (129), Expect = 1e-07
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
V +LS + D++ F PFG IS + KD TG+SKG+ F+SF+ + DA AI + G
Sbjct: 118 VGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
Query: 303 FGYDHLILNVEWA 315
+ WA
Sbjct: 178 QWLGGRQIRTNWA 190
Score = 42.4 bits (98), Expect = 6e-04
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 232 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 291
N+ + N T+ ++ + +++ F PFG I I + +K G++F+ F E
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 268
Query: 292 DAARAIAGVSGFGYDHLILNVEWAKPS 318
AA AI V+G + ++ W K S
Sbjct: 269 SAAHAIVSVNGTTIEGHVVKCYWGKES 295
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD----KTTGQSKGFA-----------F 284
T+ V NLS D E + +LF G + + + S GF+ F
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
Query: 285 ISFHRREDAARAIAGVSGFGYDHLILNVEWA 315
+ F+ DAA A+A ++G + V WA
Sbjct: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 54.3 bits (129), Expect = 1e-07
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
V +LS + D++ F PFG IS + KD TG+SKG+ F+SF+ + DA AI + G
Sbjct: 101 VGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 160
Query: 303 FGYDHLILNVEWA 315
+ WA
Sbjct: 161 QWLGGRQIRTNWA 173
Score = 42.4 bits (98), Expect = 6e-04
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 232 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 291
N+ + N T+ ++ + +++ F PFG I I + +K G++F+ F E
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 251
Query: 292 DAARAIAGVSGFGYDHLILNVEWAKPS 318
AA AI V+G + ++ W K S
Sbjct: 252 SAAHAIVSVNGTTIEGHVVKCYWGKES 278
Score = 37.0 bits (84), Expect = 0.023
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
T+ V NLS D E + +LF G + + T+ + F+ F+ DAA A+A
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 300 VSGFGYDHLILNVEWA 315
++G + V WA
Sbjct: 68 MNGRKILGKEVKVNWA 83
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I + NL +D E L ++F PFG+++ + + +D T + KGF F++ E+AA AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 301 SGFGYDHLILNVEW 314
+G+ IL V +
Sbjct: 306 NGYRLGDKILQVSF 319
Score = 50.1 bits (118), Expect = 3e-06
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 227 ESMQPNRRADDNATIRVTN-LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFI 285
+ M + R D T + N L ++ + +L+ LF G + L +DK G S G+ F+
Sbjct: 7 DHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFV 66
Query: 286 SFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 319
++ +DA RAI ++G + V +A+PS+
Sbjct: 67 NYVTAKDAERAINTLNGLRLQSKTIKVSYARPSS 100
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ +A + ++ L + D++++F FG I + D+TTG S+G AFI F +
Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156
Query: 290 REDAARAIAGVSG 302
R +A AI +G
Sbjct: 157 RSEAEEAITSFNG 169
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 54.3 bits (129), Expect = 1e-07
Identities = 28/103 (27%), Positives = 50/103 (48%)
Query: 215 PPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK 274
PP + ++ + Q R D I + +L ++ ++++ ++F PFG + + D+
Sbjct: 356 PPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR 415
Query: 275 TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
T QSK F F+SF A AI ++GF L V+ +P
Sbjct: 416 ATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 458
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 237 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 296
D + V + E DL+ +F FG I + + KDK TG KG AF+++ R+ A +A
Sbjct: 5 DAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 64
Score = 35.0 bits (79), Expect = 0.089
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 23/106 (21%)
Query: 192 EKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTR 251
E++ LPG P+Q V P+ + RGE + + V L +
Sbjct: 70 EQKTLPGMNRPIQ---------VKPA---DSESRGEDRK----------LFVGMLGKQQT 107
Query: 252 ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
+ D++++F PFG+I + + G SKG AF+ F +A AI
Sbjct: 108 DEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAI 152
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 241 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 300
I V NL+ D E+ L ++F PFG+++ + + +D T + KGF F++ ++AA AIA +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 301 SGFGYDHLILNVEWAKPSTN 320
+G+ +L V + T+
Sbjct: 338 NGYRLGDRVLQVSFKTNKTH 357
Score = 52.0 bits (123), Expect = 7e-07
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 236 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR 295
D + V L ++ + +L+ LF G I L +DK TGQS G+ F+++ +DA +
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95
Query: 296 AIAGVSGFGYDHLILNVEWAKPST 319
AI ++G + V +A+PS+
Sbjct: 96 AINTLNGLRLQTKTIKVSYARPSS 119
Score = 45.8 bits (107), Expect = 5e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P+ + +A + V+ L + + +L++LF +G I + D+ TG S+G FI F +
Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175
Query: 290 REDAARAIAGVSG 302
R +A AI G++G
Sbjct: 176 RIEAEEAIKGLNG 188
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 53.5 bits (127), Expect = 2e-07
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 230 QPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 289
+P D T++V NL+ T L+ +F +G + +Y+ ++ T +GFAF+ FH
Sbjct: 5 RPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHD 64
Query: 290 REDAARAIAGVSGFGYDHLILNVEWAK 316
R DA A A + G D L V+ A+
Sbjct: 65 RRDAQDAEAAMDGAELDGRELRVQVAR 91
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 52.8 bits (125), Expect = 4e-07
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 223 SRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 282
SR+ + RA + + + N ED + L++LF FG + + D++ G+SKGF
Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGF 233
Query: 283 AFISFHRREDAARAIAGVSG 302
F+SF R EDA +A+ ++G
Sbjct: 234 GFVSFERHEDAQKAVDEMNG 253
Score = 44.3 bits (103), Expect = 1e-04
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 229 MQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFH 288
M P+ + A++ V +L D E L E F P G I I + +D T +S G+A+++F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 289 RREDAARAI 297
+ DA RA+
Sbjct: 61 QPADAERAL 69
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 224 RRGESMQPNRRAD-DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 282
R+ E M+ +R + V NL + + L++ F PFG+I+ + + G+SKGF
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGF 335
Query: 283 AFISFHRREDAARAIAGVSG 302
F+ F E+A +A+ ++G
Sbjct: 336 GFVCFSSPEEATKAVTEMNG 355
Score = 35.0 bits (79), Expect = 0.089
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 231 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 290
P+ R I + NL + L + F FG+I + D+ SKG+ F+ F +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQ 148
Query: 291 EDAARAIAGVSG 302
E A RAI ++G
Sbjct: 149 EAAERAIEKMNG 160
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 52.4 bits (124), Expect = 5e-07
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 235 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294
AD + + L+ +T E L+ +F +G I + L KD+ T +S+GFAF++F DA
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 295 RAIAGVSGFGYDHLILNVEWA-KPS 318
A ++G D + VE A KPS
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPS 88
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 52.4 bits (124), Expect = 5e-07
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 235 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294
AD + + L+ +T E L+ +F +G I + L KD+ T +S+GFAF++F DA
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 295 RAIAGVSGFGYDHLILNVEWA-KPS 318
A ++G D + VE A KPS
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPS 88
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 52.4 bits (124), Expect = 5e-07
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 245 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 303
N++ED L+ +F PFG I I L KD TG+SKG+ FI+F E A RA+ ++GF
Sbjct: 239 NITEDM----LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 293
Score = 35.8 bits (81), Expect = 0.052
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 227 ESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFIS 286
+++ P R D T+ L+ R DL++ F G + + + D+ + +SKG A++
Sbjct: 122 DNLSPEER--DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVE 179
Query: 287 FHRREDAARAIAGVSG 302
F + AI G++G
Sbjct: 180 FCEIQSVPLAI-GLTG 194
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 52.4 bits (124), Expect = 5e-07
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 245 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 303
N++ED L+ +F PFG I I L KD TG+SKG+ FI+F E A RA+ ++GF
Sbjct: 273 NITEDM----LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 327
Score = 38.1 bits (87), Expect = 0.010
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 202 PVQATQNKTGKYVPPSLRDGASRRG--ESMQPNRRADDNATIRVTNLSEDTRETDLQELF 259
P AT + G P R+ + R +++ P R D T+ L+ R DL++ F
Sbjct: 129 PPLATGYRYGHSKSPHFREKSPVREPVDNLSPEER--DARTVFCMQLAARIRPRDLEDFF 186
Query: 260 RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
G + + + D+ + +SKG A++ F + AI G++G
Sbjct: 187 SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG 228
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 52.4 bits (124), Expect = 5e-07
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 245 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 303
N++ED L+ +F PFG I I L KD TG+SKG+ FI+F E A RA+ ++GF
Sbjct: 257 NITEDM----LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 311
Score = 38.1 bits (87), Expect = 0.010
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 202 PVQATQNKTGKYVPPSLRDGASRRG--ESMQPNRRADDNATIRVTNLSEDTRETDLQELF 259
P AT + G P R+ + R +++ P R D T+ L+ R DL++ F
Sbjct: 113 PPLATGYRYGHSKSPHFREKSPVREPVDNLSPEER--DARTVFCMQLAARIRPRDLEDFF 170
Query: 260 RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
G + + + D+ + +SKG A++ F + AI G++G
Sbjct: 171 SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG 212
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 52.4 bits (124), Expect = 5e-07
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 223 SRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 282
SR+ + RA + + + N ED + L++LF FG + + D++ G+SKGF
Sbjct: 175 SRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGF 233
Query: 283 AFISFHRREDAARAIAGVSG 302
F+SF R EDA +A+ ++G
Sbjct: 234 GFVSFERHEDAQKAVDEMNG 253
Score = 42.0 bits (97), Expect = 7e-04
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 229 MQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFH 288
M P+ + A++ V +L D E L E F P G I I + +D T S +A+++F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 60
Query: 289 RREDAARAI 297
+DA A+
Sbjct: 61 HTKDAEHAL 69
Score = 39.7 bits (91), Expect = 0.004
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
V NL + + L++ F PFG+I+ + + G+SKGF F+ F E+A +A+ ++G
Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 33.1 bits (74), Expect = 0.34
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 231 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 290
P+ R I V NL + L + FG+I + D+ SKG+ F+ F
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETH 148
Query: 291 EDAARAIAGVSG 302
E A RAI ++G
Sbjct: 149 EAAERAIKKMNG 160
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 52.4 bits (124), Expect = 5e-07
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 235 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294
AD + + L+ +T E L+ +F +G I + L KD+ T +S+GFAF++F DA
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 295 RAIAGVSGFGYDHLILNVEWA-KPS 318
A ++G D + VE A KPS
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPS 88
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 52.0 bits (123), Expect = 7e-07
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
V +LS + D++ F PFG IS + KD TG+SKG+ F+SF + DA AI + G
Sbjct: 99 VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 158
Query: 303 FGYDHLILNVEWA 315
+ WA
Sbjct: 159 QWLGGRQIRTNWA 171
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 232 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 291
N+ + N T+ ++ E +++ F PFG I I + DK G++F+ F+ E
Sbjct: 196 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHE 249
Query: 292 DAARAIAGVSGFGYDHLILNVEWAK 316
AA AI V+G + ++ W K
Sbjct: 250 SAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 37.7 bits (86), Expect = 0.014
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299
T+ V NLS D E + +LF G + D T + + F+ FH AA A+A
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 300 VSGFGYDHLILNVEWA 315
++G + V WA
Sbjct: 66 MNGRKIMGKEVKVNWA 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,185,373
Number of Sequences: 37866
Number of extensions: 685399
Number of successful extensions: 2834
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 2381
Number of HSP's gapped (non-prelim): 490
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.