Guide to the Human Genome
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Name: TP73 Sequence: fasta or formatted (636aa) NCBI GI: 4885645
Description:

tumor protein p73 isoform a

Referenced in:

p53 Pathway

Other entries for this name:
alt prot [587aa] tumor protein p73 isoform b
alt prot [450aa] tumor protein p73 isoform c
alt prot [426aa] tumor protein p73 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         42           2
 C cysteine            1.7         11           1
 D aspartate           4.2         27           2
 E glutamate           5.3         34           2
 F phenylalanine       3.0         19           1
 G glycine             7.7         49           3
 H histidine           3.8         24           2
 I isoleucine          3.8         24           3
 K lysine              3.6         23           2
 L leucine             7.4         47           2
 M methionine          3.1         20           1
 N asparagine          3.9         25           2
 P proline             9.1         58           4
 Q glutamine           6.1         39           4
 R arginine            5.0         32           2
 S serine              9.7         62           3
 T threonine           6.1         39           2
 V valine              5.8         37           3
 W tryptophan          0.6          4           1
 Y tyrosine            3.1         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor protein p73 isoform a 
TP73                  0.902   tumor protein p73 isoform b 
TP73                  0.673   tumor protein p73 isoform c 
TP73                  0.518   tumor protein p73 isoform d 
TP63                  0.507   tumor protein p63 isoform 1 
TP63                  0.497   tumor protein p63 isoform 4 
TP63                  0.412   tumor protein p63 isoform 2 
TP63                  0.401   tumor protein p63 isoform 5 
TP63                  0.366   tumor protein p63 isoform 3 
TP63                  0.356   tumor protein p63 isoform 6 
TP53                  0.196   tumor protein p53 isoform a 
TP53                  0.196   tumor protein p53 isoform a 
TP53                  0.178   tumor protein p53 isoform b 
TP53                  0.178   tumor protein p53 isoform c 
TP53                  0.164   tumor protein p53 isoform d 
TP53                  0.147   tumor protein p53 isoform f 
TP53                  0.147   tumor protein p53 isoform e 
MNT                   0.012   MAX binding protein 
MED1                  0.009   mediator complex subunit 1 
MLL5                  0.009   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.009   myeloid/lymphoid or mixed-lineage leukemia 5 
SMARCC1               0.009   SWI/SNF-related matrix-associated actin-dependent r...
MUC5AC                0.008   mucin 5AC 
C21orf66              0.008   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.008   GC-rich sequence DNA-binding factor candidate isofor...
MUC21                 0.008   mucin 21 
DOK2                  0.007   docking protein 2 
PRRT1                 0.007   NG5 protein 
SAMD11                0.007   sterile alpha motif domain containing 11 
SPTY2D1               0.007   SPT2, Suppressor of Ty, domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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