Guide to the Human Genome
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Name: LOC400713 Sequence: fasta or formatted (577aa) NCBI GI: 224177533
Description:

zinc finger protein LOC400713

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         24           1
 C cysteine            5.9         34           1
 D aspartate           2.3         13           2
 E glutamate           7.5         43           2
 F phenylalanine       4.0         23           1
 G glycine             6.4         37           2
 H histidine           8.3         48           2
 I isoleucine          4.0         23           1
 K lysine             10.1         58           2
 L leucine             7.6         44           2
 M methionine          0.7          4           1
 N asparagine          7.1         41           2
 P proline             3.8         22           1
 Q glutamine           3.8         22           1
 R arginine            7.1         41           2
 S serine              6.2         36           3
 T threonine           3.8         22           1
 V valine              3.8         22           1
 W tryptophan          0.2          1           1
 Y tyrosine            3.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein LOC400713 
ZNF528                0.675   zinc finger protein 528 
ZNF534                0.674   zinc finger protein 534 isoform 1 
ZNF534                0.666   zinc finger protein 534 isoform 2 
ZNF480                0.579   zinc finger protein 480 
ZNF665                0.527   zinc finger protein 665 
ZNF813                0.526   zinc finger protein 813 
ZNF347                0.517   zinc finger protein 347 
ZNF83                 0.514   zinc finger protein 83 isoform a 
ZNF83                 0.514   zinc finger protein 83 isoform a 
ZNF83                 0.514   zinc finger protein 83 isoform a 
ZNF83                 0.514   zinc finger protein 83 isoform a 
ZNF83                 0.514   zinc finger protein 83 isoform a 
LOC388559             0.511   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.511   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.511   PREDICTED: hypothetical protein LOC388559 
ZNF836                0.506   zinc finger protein 836 
ZNF816A               0.505   zinc finger protein 816A 
ZNF841                0.503   zinc finger protein 841 
ZNF761                0.498   zinc finger protein 761 
ZNF83                 0.495   zinc finger protein 83 isoform b 
ZNF83                 0.495   zinc finger protein 83 isoform b 
ZNF160                0.491   zinc finger protein 160 
ZNF160                0.491   zinc finger protein 160 
ZNF160                0.491   zinc finger protein 160 
ZNF616                0.487   zinc finger protein 616 
ZNF85                 0.484   zinc finger protein 85 
ZNF860                0.482   zinc finger protein 860 
ZNF845                0.482   zinc finger protein 845 
ZNF766                0.478   zinc finger protein 766 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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