Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4826912
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4826912 paired-like homeodomain 3 [Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 616 e-177
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 298 5e-81
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 297 7e-81
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 297 7e-81
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 280 9e-76
gi|24497589 aristaless related homeobox [Homo sapiens] 126 3e-29
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 109 3e-24
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 109 3e-24
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 106 3e-23
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 106 3e-23
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 106 3e-23
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 104 8e-23
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 103 2e-22
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 103 2e-22
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 102 5e-22
gi|12707580 paired-like homeobox 2b [Homo sapiens] 101 7e-22
gi|46249382 paired-like homeobox 2a [Homo sapiens] 101 9e-22
gi|4557489 cone-rod homeobox protein [Homo sapiens] 100 1e-21
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 100 2e-21
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 99 4e-21
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 99 4e-21
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 99 4e-21
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 99 4e-21
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 99 4e-21
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 99 4e-21
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 98 1e-20
gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Hom... 98 1e-20
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens] 95 7e-20
gi|122937321 UNC homeobox [Homo sapiens] 94 2e-19
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens] 93 3e-19
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 616 bits (1588), Expect = e-177
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKK 60
MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKK
Sbjct: 1 MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKK 60
Query: 61 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 120
KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR
Sbjct: 61 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 120
Query: 121 ERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVNVG 180
ERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVNVG
Sbjct: 121 ERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVNVG 180
Query: 181 PLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCPYA 240
PLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCPYA
Sbjct: 181 PLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCPYA 240
Query: 241 SAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVHGPPPAANLSPCQYAVER 300
SAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVHGPPPAANLSPCQYAVER
Sbjct: 241 SAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVHGPPPAANLSPCQYAVER 300
Query: 301 PV 302
PV
Sbjct: 301 PV 302
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 298 bits (762), Expect = 5e-81
Identities = 169/297 (56%), Positives = 200/297 (67%), Gaps = 25/297 (8%)
Query: 10 EARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKKKQRRQRTHF 69
E+R A S HP G D + + G+ ED S KK+QRRQRTHF
Sbjct: 42 ESRKEAASSKFFPRQHP--------GANEKDKSQQGKNEDVGA-EDPSKKKRQRRQRTHF 92
Query: 70 TSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERSQQAELC 129
TSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER+QQAELC
Sbjct: 93 TSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELC 152
Query: 130 KGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL-APPLAAKTFPFAFNSVNVGPLASQPVF 188
K F GL+ PY+++YPGYSY NW K L + L+ K+FPF FNS+NV PL+SQ +F
Sbjct: 153 KNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPF-FNSMNVNPLSSQSMF 211
Query: 189 SPPSSIAASMVPSAAAAPGTVPG-PGALQGLGGGPPGLAPAAVSSG--AVSCPYASAAAA 245
SPP+SI +SM S++ P V G PG+ L+ +++S +CPY
Sbjct: 212 SPPNSI-SSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPY------ 264
Query: 246 AAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVHGPPPAANLSPCQYAVERPV 302
A + PYVYRD CNSSLASLRLKAKQH+SF Y +V PA+NLS CQYAV+RPV
Sbjct: 265 --APPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQN--PASNLSACQYAVDRPV 317
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 297 bits (761), Expect = 7e-81
Identities = 160/253 (63%), Positives = 187/253 (73%), Gaps = 16/253 (6%)
Query: 54 EDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 113
ED S KK+QRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR
Sbjct: 84 EDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 143
Query: 114 RAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL-APPLAAKTFPF 172
RAKWRKRER+QQAELCK F GL+ PY+++YPGYSY NW K L + L+ K+FPF
Sbjct: 144 RAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPF 203
Query: 173 AFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG-PGALQGLGGGPPGLAPAAVS 231
FNS+NV PL+SQ +FSPP+SI +SM S++ P V G PG+ L+ +++
Sbjct: 204 -FNSMNVNPLSSQSMFSPPNSI-SSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLN 261
Query: 232 SG--AVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVHGPPPAA 289
S +CPY A + PYVYRD CNSSLASLRLKAKQH+SF Y +V PA+
Sbjct: 262 SAVPTPACPY--------APPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQN--PAS 311
Query: 290 NLSPCQYAVERPV 302
NLS CQYAV+RPV
Sbjct: 312 NLSACQYAVDRPV 324
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 297 bits (761), Expect = 7e-81
Identities = 160/253 (63%), Positives = 187/253 (73%), Gaps = 16/253 (6%)
Query: 54 EDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 113
ED S KK+QRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR
Sbjct: 31 EDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 90
Query: 114 RAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL-APPLAAKTFPF 172
RAKWRKRER+QQAELCK F GL+ PY+++YPGYSY NW K L + L+ K+FPF
Sbjct: 91 RAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPF 150
Query: 173 AFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG-PGALQGLGGGPPGLAPAAVS 231
FNS+NV PL+SQ +FSPP+SI +SM S++ P V G PG+ L+ +++
Sbjct: 151 -FNSMNVNPLSSQSMFSPPNSI-SSMSMSSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLN 208
Query: 232 SG--AVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVHGPPPAA 289
S +CPY A + PYVYRD CNSSLASLRLKAKQH+SF Y +V PA+
Sbjct: 209 SAVPTPACPY--------APPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQN--PAS 258
Query: 290 NLSPCQYAVERPV 302
NLS CQYAV+RPV
Sbjct: 259 NLSACQYAVDRPV 271
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 280 bits (717), Expect = 9e-76
Identities = 164/299 (54%), Positives = 197/299 (65%), Gaps = 22/299 (7%)
Query: 3 FGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKKKQ 62
F L A+ R P L S + + +LPE G+ + + G +D + KKKQ
Sbjct: 31 FHLARPADPREP-LENSASESSDTELPEKERGGEPKGPEDSGAGGTGCGGADDPAKKKKQ 89
Query: 63 RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 122
RRQRTHFTSQQLQELEATFQRNRYPDMS REEIAVWTNLTE RVRVWFKNRRAKWRKRER
Sbjct: 90 RRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRER 149
Query: 123 SQQAELCKGSFAAPLGGLVPPYEEVY-PGYSYGNWPPKALAP-PLAAKTFPFAFNSVNVG 180
+QQ +LCKG + GLV PYE+VY GYSY NW K+LAP PL+ K+F F FNS++
Sbjct: 150 NQQLDLCKGGYVPQFSGLVQPYEDVYAAGYSYNNWAAKSLAPAPLSTKSFTF-FNSMS-- 206
Query: 181 PLASQPVFSPPSSIAASMVPSAAAAPGTVPG--PGALQGLGGGPPGLAPAAVSSGAVSCP 238
PL+SQ +FS PSSI++ +PS + PG VPG L + +A+S GA CP
Sbjct: 207 PLSSQSMFSAPSSISSMTMPS-SMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPGA--CP 263
Query: 239 YASAAAAAAAAASSPY-VYRDPCNSSLASLRLKAKQHASFSYPAVHGPPPAANLSPCQY 296
Y + A SPY VYRD CNSSLASLRLK+KQH+SF Y + G PA+ L+ CQY
Sbjct: 264 YGTPA--------SPYSVYRDTCNSSLASLRLKSKQHSSFGYGGLQG--PASGLNACQY 312
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 126 bits (316), Expect = 3e-29
Identities = 96/260 (36%), Positives = 125/260 (48%), Gaps = 38/260 (14%)
Query: 37 EHSDSEKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIA 96
E D E + G E+G LK+KQRR RT FTS QL+ELE FQ+ YPD+ TREE+A
Sbjct: 303 EGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELA 362
Query: 97 VWTNLTEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNW 156
+ +LTEARV+VWF+NRRAKWRKRE++ G P +PG
Sbjct: 363 MRLDLTEARVQVWFQNRRAKWRKREKA--------------GAQTHPPGLPFPGPLSATH 408
Query: 157 PPKALAPPLAAKTFP-------FAFNSVNVGPLASQPVFSPPSSIAASMVPSAA-AAPGT 208
P L+P L A FP A+ + A+ P PP +AS+ PS A T
Sbjct: 409 P---LSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPG-SASLPPSGAPLGLST 464
Query: 209 VPGPGALQGLGGGPPG-------LAPAAVSSGAVS-----CPYASAAAAAAAAASSPYVY 256
G + P +AP +S A + P A A+ A A
Sbjct: 465 FLGAAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPATAA 524
Query: 257 RDPCNSSLASLRLKAKQHAS 276
D SS+A+LRLKAK+HA+
Sbjct: 525 ADRRASSIAALRLKAKEHAA 544
Score = 29.6 bits (65), Expect = 3.4
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 192 SSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAAAAS 251
++ AA+ +AAAA GP G PP P A A+AAAAAAAAA+
Sbjct: 101 AAAAAAAAAAAAAAATATAGPR-----GEAPPPPPPTARPGERPDGAGAAAAAAAAAAAA 155
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 109 bits (273), Expect = 3e-24
Identities = 97/280 (34%), Positives = 123/280 (43%), Gaps = 38/280 (13%)
Query: 10 EARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSP-------EDGSLKKKQ 62
E P+ + A P + P C + + S LP G E+ KKK
Sbjct: 79 EGSEPSPPPAPAPAPEYEAPRPYCP--KEPGEARPSPGLPVGPATGEAKLSEEEQPKKKH 136
Query: 63 RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE- 121
RR RT FT+ QL ELE F+++ YPD+ +REE+A NL E RV+VWF+NRRAKWR++E
Sbjct: 137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
Query: 122 ------RSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFN 175
+ Q + L S + P L P PG G P A PL + P
Sbjct: 197 LEVSSMKLQDSPLLSFSRSPPSATLSP--LGAGPGSGGG---PAGGALPLESWLGP-PLP 250
Query: 176 SVNVGPLASQPVFSPPS-SIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGA 234
L S P F PP+ S+ AS P P P LG G LAP
Sbjct: 251 GGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPP-----LGPGLQPLAP------- 298
Query: 235 VSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQH 274
P S P DP NSS+A+LRLKAK+H
Sbjct: 299 ---PPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEH 335
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 109 bits (273), Expect = 3e-24
Identities = 89/270 (32%), Positives = 123/270 (45%), Gaps = 47/270 (17%)
Query: 13 SPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGG--SPEDGSLKKKQRRQRTHFT 70
S LS+ +AG PQ ++AS+ LP + S K K+RR RT FT
Sbjct: 177 SSYLSVKEAGVKGPQ--------------DRASSDLPSPLEKADSESNKGKKRRNRTTFT 222
Query: 71 SQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERSQQAELCK 130
S QL+ELE FQ+ YPD+ RE++A+ T+LTEARV+VWF+NRRAKWRKRER Q + +
Sbjct: 223 SYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVR 282
Query: 131 GSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSP 190
F+ + E Y +W L AA P + P P P
Sbjct: 283 THFSTAYELPLLTRAENYAQIQNPSW----LGNNGAASPVPACVVPCDPVPACMSPHAHP 338
Query: 191 PSSIAASMVP----SAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAA 246
P S A+S+ S A + G+L G PGL ++
Sbjct: 339 PGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNGYELNGEP------------ 386
Query: 247 AAAASSPYVYRDPCNSSLASLRLKAKQHAS 276
D SS+A+LR+KAK+H++
Sbjct: 387 -----------DRKTSSIAALRMKAKEHSA 405
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 106 bits (264), Expect = 3e-23
Identities = 69/167 (41%), Positives = 90/167 (53%), Gaps = 23/167 (13%)
Query: 52 SPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 111
S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+A T LTEARV+VWF
Sbjct: 207 SEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFS 266
Query: 112 NRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL--APP--LAA 167
NRRA+WRK+ + Q A L+P G +PP + PP L
Sbjct: 267 NRRARWRKQAGANQ--------LAAFNHLLP-----------GGFPPTGMPTLPPYQLPD 307
Query: 168 KTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGA 214
T+P S + G +P PPS++ + +AAAA T GA
Sbjct: 308 STYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGA 354
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 106 bits (264), Expect = 3e-23
Identities = 69/167 (41%), Positives = 90/167 (53%), Gaps = 23/167 (13%)
Query: 52 SPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 111
S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+A T LTEARV+VWF
Sbjct: 205 SEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFS 264
Query: 112 NRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL--APP--LAA 167
NRRA+WRK+ + Q A L+P G +PP + PP L
Sbjct: 265 NRRARWRKQAGANQ--------LAAFNHLLP-----------GGFPPTGMPTLPPYQLPD 305
Query: 168 KTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGA 214
T+P S + G +P PPS++ + +AAAA T GA
Sbjct: 306 STYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGA 352
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 106 bits (264), Expect = 3e-23
Identities = 69/167 (41%), Positives = 90/167 (53%), Gaps = 23/167 (13%)
Query: 52 SPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 111
S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+A T LTEARV+VWF
Sbjct: 207 SEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFS 266
Query: 112 NRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL--APP--LAA 167
NRRA+WRK+ + Q A L+P G +PP + PP L
Sbjct: 267 NRRARWRKQAGANQ--------LAAFNHLLP-----------GGFPPTGMPTLPPYQLPD 307
Query: 168 KTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGA 214
T+P S + G +P PPS++ + +AAAA T GA
Sbjct: 308 STYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGA 354
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 104 bits (260), Expect = 8e-23
Identities = 56/119 (47%), Positives = 68/119 (57%)
Query: 42 EKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNL 101
EK G + K+RR RT FTS QL+ELE FQ+ YPD+ RE++A+ T L
Sbjct: 112 EKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTEL 171
Query: 102 TEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKA 160
TEARV+VWF+NRRAKWRKRER Q + K FAA V P + YP W A
Sbjct: 172 TEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNA 230
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 103 bits (256), Expect = 2e-22
Identities = 80/236 (33%), Positives = 111/236 (47%), Gaps = 37/236 (15%)
Query: 44 ASASLP--GGSPEDGSL---KKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVW 98
AS LP G P+ L K K+RR RT F++ QL+ELE FQ+ YPD+ RE++A+
Sbjct: 130 ASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALR 189
Query: 99 TNLTEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPP 158
T+LTEARV+VWF+NRRAKWRKRER + + + F A V P + +P W
Sbjct: 190 TDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWAS 249
Query: 159 KALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGL 218
P P ++ +PS +P + P G++ G
Sbjct: 250 PGSGSP------------------------GGPCLVSPEGIPSPCMSPYSHP-HGSVAGF 284
Query: 219 GGGPPGLAPAAVSSGAVSC-PYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQ 273
G P AP+A G S + + SS Y+ P SL SLR+K K+
Sbjct: 285 MGVP---APSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSP---SLVSLRVKPKE 334
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 103 bits (256), Expect = 2e-22
Identities = 74/202 (36%), Positives = 103/202 (50%), Gaps = 26/202 (12%)
Query: 60 KKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 119
+KQRR+RT FT QL LEA F + RYPD+ REE+A+ NL E+RV+VWFKNRRAK R+
Sbjct: 36 RKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95
Query: 120 RERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVNV 179
+++S G+ + P P E S G + P A++ +S +
Sbjct: 96 QQQSG-----SGTKSRPAKKKSSPVRESSGSESSGQFTPPAVS------------SSASS 138
Query: 180 GPLASQPVFSPPSSIAASM--VPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVS------ 231
AS +P ++ AA + P AAA+ + P ++ PG APA+VS
Sbjct: 139 SSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPLA 198
Query: 232 -SGAVSCPYASAAAAAAAAASS 252
SC S AA AA AA+S
Sbjct: 199 APSNTSCMQRSVAAGAATAAAS 220
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 102 bits (253), Expect = 5e-22
Identities = 78/225 (34%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 51 GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWF 110
G +DG L++KQRR RT FT QQL+ LEA F + YPD+ TREE+A+ NLTEARV+VWF
Sbjct: 27 GDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWF 86
Query: 111 KNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTF 170
+NRRAKWRK ER + + P+ + PP P + + PP A
Sbjct: 87 QNRRAKWRKTERGASDQ--EPGAKEPMAEVTPP-----PVRNINSPPPGDQARSKKEALE 139
Query: 171 PFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAV 230
VGP + P F PS + +++ +A A + L GGP +
Sbjct: 140 AQQSLGRTVGP--AGPFF--PSCLPGTLLNTATYAQAL----SHVASLKGGP-------L 184
Query: 231 SSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHA 275
S V P + S+ +S+A+LR+KA++H+
Sbjct: 185 CSCCVPDPMGLSFLPTYGCQSNR-------TASVATLRMKAREHS 222
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 101 bits (252), Expect = 7e-22
Identities = 80/198 (40%), Positives = 100/198 (50%), Gaps = 26/198 (13%)
Query: 59 KKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 118
K+KQRR RT FTS QL+ELE F YPD+ TREE+A+ +LTEARV+VWF+NRRAK+R
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
Query: 119 KRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVN 178
K+ER+ A + AA G + S A T P +
Sbjct: 155 KQERAAAA----AAAAAKNGSSGKKSDSSRDDES-----------KEAKSTDPDSTGGPG 199
Query: 179 VGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCP 238
P P S ++ PS A APG GPG GG PG AA ++ A +
Sbjct: 200 PNP---NPTPSCGANGGGGGGPSPAGAPGAA-GPGG----PGGEPGKGGAAAAAAAAAAA 251
Query: 239 YASAAAAAA---AAASSP 253
A+AAAAAA AAA P
Sbjct: 252 AAAAAAAAAGGLAAAGGP 269
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 101 bits (251), Expect = 9e-22
Identities = 83/218 (38%), Positives = 104/218 (47%), Gaps = 24/218 (11%)
Query: 21 AGTPHPQLPEHGCKGQEHSDSEKASASLPGGS--PEDGSL--KKKQRRQRTHFTSQQLQE 76
AG P P L C D + A S PE L K+KQRR RT FTS QL+E
Sbjct: 45 AGPPCPALGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKE 104
Query: 77 LEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAP 136
LE F YPD+ TREE+A+ +LTEARV+VWF+NRRAK+RK+ER+ A+ G+ A
Sbjct: 105 LERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAK 164
Query: 137 LGGLVPPYEEVYPGYSYGNWPPKALA--PPLAAKTFPFAFNSVNVGPLASQPVFSPPSSI 194
G E+ S + P + A PP A P + P S PS +
Sbjct: 165 KGEARCSSEDDDSKESTCSPTPDSTASLPPPPA-------------PGLASPRLS-PSPL 210
Query: 195 AASMVPSAAAAPGTVPGPGAL----QGLGGGPPGLAPA 228
++ PG P GAL G GGG PG A
Sbjct: 211 PVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAA 248
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 100 bits (250), Expect = 1e-21
Identities = 75/205 (36%), Positives = 97/205 (47%), Gaps = 29/205 (14%)
Query: 57 SLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 116
S +KQRR+RT FT QL+ELEA F + +YPD+ REE+A+ NL E+RV+VWFKNRRAK
Sbjct: 34 SAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAK 93
Query: 117 WRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNS 176
R++ + Q+ + P GG KA A T P
Sbjct: 94 CRQQRQQQKQQ------QQPPGG-----------------QAKARPAKRKAGTSPRPSTD 130
Query: 177 VNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSG--A 234
V PL +SPP S P+ A A ++ P + L P V+SG
Sbjct: 131 VCPDPLGISDSYSPPLP-GPSGSPTTAVATVSIWSPASESPL---PEAQRAGLVASGPSL 186
Query: 235 VSCPYASAAAAAAAAASSPYVYRDP 259
S PYA A A+A SSP Y P
Sbjct: 187 TSAPYAMTYAPASAFCSSPSAYGSP 211
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 100 bits (248), Expect = 2e-21
Identities = 86/234 (36%), Positives = 113/234 (48%), Gaps = 43/234 (18%)
Query: 51 GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWF 110
G ++G K KQRR RT+FT +QL ELE F YPD REE++ L+EARV+VWF
Sbjct: 129 GMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWF 188
Query: 111 KNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTF 170
+NRRAK RK+E + G+ + V PY V A
Sbjct: 189 QNRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNV------------------GALRM 230
Query: 171 PFAFNS-VNVGPLASQ--PVFSPPSSIAAS---MVPSAAA-APGTV-PGPGALQGLGGGP 222
PF +S NV PL+ Q S++A + + P AA AP + P P P
Sbjct: 231 PFQQDSHCNVTPLSFQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAP---------P 281
Query: 223 PGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHAS 276
GL A +++ + S AAAAAA S NSS+A LRLKAK+HA+
Sbjct: 282 FGLPLATLAADSASAASVVAAAAAAKTTSK--------NSSIADLRLKAKKHAA 327
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 99.4 bits (246), Expect = 4e-21
Identities = 71/205 (34%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 41 SEKASASLPG-----GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI 95
SE+ASA S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+
Sbjct: 192 SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREEL 251
Query: 96 AVWTNLTEARVRVWFKNRRAKWRKRERSQQA----ELCKGSFAAPLGGLVPPYEEVYPGY 151
A LTEARV+VWF NRRA+WRK+ + Q L G F +P Y+ Y
Sbjct: 252 AQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSY 311
Query: 152 SYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG 211
+ P+A++ P + P QP+ PPS++ S +PS +
Sbjct: 312 QPTS-IPQAVSDPSSTVHRP-------------QPL--PPSTVHQSTIPSNPDSSSAYCL 355
Query: 212 PGALQGLGGGPPGLAPAAVSSGAVS 236
P G P + S ++
Sbjct: 356 PSTRHGFSSYTDSFVPPSGPSNPMN 380
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 99.4 bits (246), Expect = 4e-21
Identities = 71/205 (34%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 41 SEKASASLPG-----GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI 95
SE+ASA S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+
Sbjct: 193 SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREEL 252
Query: 96 AVWTNLTEARVRVWFKNRRAKWRKRERSQQA----ELCKGSFAAPLGGLVPPYEEVYPGY 151
A LTEARV+VWF NRRA+WRK+ + Q L G F +P Y+ Y
Sbjct: 253 AQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSY 312
Query: 152 SYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG 211
+ P+A++ P + P QP+ PPS++ S +PS +
Sbjct: 313 QPTS-IPQAVSDPSSTVHRP-------------QPL--PPSTVHQSTIPSNPDSSSAYCL 356
Query: 212 PGALQGLGGGPPGLAPAAVSSGAVS 236
P G P + S ++
Sbjct: 357 PSTRHGFSSYTDSFVPPSGPSNPMN 381
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 99.4 bits (246), Expect = 4e-21
Identities = 71/205 (34%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 41 SEKASASLPG-----GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI 95
SE+ASA S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+
Sbjct: 193 SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREEL 252
Query: 96 AVWTNLTEARVRVWFKNRRAKWRKRERSQQA----ELCKGSFAAPLGGLVPPYEEVYPGY 151
A LTEARV+VWF NRRA+WRK+ + Q L G F +P Y+ Y
Sbjct: 253 AQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSY 312
Query: 152 SYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG 211
+ P+A++ P + P QP+ PPS++ S +PS +
Sbjct: 313 QPTS-IPQAVSDPSSTVHRP-------------QPL--PPSTVHQSTIPSNPDSSSAYCL 356
Query: 212 PGALQGLGGGPPGLAPAAVSSGAVS 236
P G P + S ++
Sbjct: 357 PSTRHGFSSYTDSFVPPSGPSNPMN 381
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 99.4 bits (246), Expect = 4e-21
Identities = 71/205 (34%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 41 SEKASASLPG-----GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI 95
SE+ASA S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+
Sbjct: 193 SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREEL 252
Query: 96 AVWTNLTEARVRVWFKNRRAKWRKRERSQQA----ELCKGSFAAPLGGLVPPYEEVYPGY 151
A LTEARV+VWF NRRA+WRK+ + Q L G F +P Y+ Y
Sbjct: 253 AQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSY 312
Query: 152 SYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG 211
+ P+A++ P + P QP+ PPS++ S +PS +
Sbjct: 313 QPTS-IPQAVSDPSSTVHRP-------------QPL--PPSTVHQSTIPSNPDSSSAYCL 356
Query: 212 PGALQGLGGGPPGLAPAAVSSGAVS 236
P G P + S ++
Sbjct: 357 PSTRHGFSSYTDSFVPPSGPSNPMN 381
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 99.4 bits (246), Expect = 4e-21
Identities = 71/205 (34%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 41 SEKASASLPG-----GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI 95
SE+ASA S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+
Sbjct: 193 SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREEL 252
Query: 96 AVWTNLTEARVRVWFKNRRAKWRKRERSQQA----ELCKGSFAAPLGGLVPPYEEVYPGY 151
A LTEARV+VWF NRRA+WRK+ + Q L G F +P Y+ Y
Sbjct: 253 AQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSY 312
Query: 152 SYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG 211
+ P+A++ P + P QP+ PPS++ S +PS +
Sbjct: 313 QPTS-IPQAVSDPSSTVHRP-------------QPL--PPSTVHQSTIPSNPDSSSAYCL 356
Query: 212 PGALQGLGGGPPGLAPAAVSSGAVS 236
P G P + S ++
Sbjct: 357 PSTRHGFSSYTDSFVPPSGPSNPMN 381
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 99.4 bits (246), Expect = 4e-21
Identities = 71/205 (34%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 41 SEKASASLPG-----GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI 95
SE+ASA S D LK+KQRR RT FT++QL+ELE F+R YPD+ TREE+
Sbjct: 193 SERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREEL 252
Query: 96 AVWTNLTEARVRVWFKNRRAKWRKRERSQQA----ELCKGSFAAPLGGLVPPYEEVYPGY 151
A LTEARV+VWF NRRA+WRK+ + Q L G F +P Y+ Y
Sbjct: 253 AQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSY 312
Query: 152 SYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPG 211
+ P+A++ P + P QP+ PPS++ S +PS +
Sbjct: 313 QPTS-IPQAVSDPSSTVHRP-------------QPL--PPSTVHQSTIPSNPDSSSAYCL 356
Query: 212 PGALQGLGGGPPGLAPAAVSSGAVS 236
P G P + S ++
Sbjct: 357 PSTRHGFSSYTDSFVPPSGPSNPMN 381
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 97.8 bits (242), Expect = 1e-20
Identities = 84/246 (34%), Positives = 115/246 (46%), Gaps = 27/246 (10%)
Query: 56 GSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 115
GS +KQRR RT FT+QQL+ LE TFQ+ YPD+ RE +A+ TNL EARV+VWFKNRRA
Sbjct: 65 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRA 124
Query: 116 KWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL--APPLAAKTFPFA 173
K+RK++RS Q E + A E P P L + P A +
Sbjct: 125 KFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLS 184
Query: 174 FNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLG---GGPPGLAPAAV 230
S + QP A + P A +PG +GLG G P +P ++
Sbjct: 185 EQSASESAPEDQP-DREEDPRAGAEDPKAEKSPG-----ADSKGLGCKRGSPKADSPGSL 238
Query: 231 SSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVH------- 283
+ V+ P + + +SSP SL L+ + +QH + + VH
Sbjct: 239 TITPVA-PGGGLLGPSHSYSSSPL--------SLFRLQEQFRQHMAATNNLVHYSSFEVG 289
Query: 284 GPPPAA 289
GP PAA
Sbjct: 290 GPAPAA 295
Score = 32.7 bits (73), Expect = 0.40
Identities = 40/124 (32%), Positives = 52/124 (41%), Gaps = 33/124 (26%)
Query: 153 YGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGP 212
Y ++ AP AA + VN+ PL S S S+ SAAAA
Sbjct: 283 YSSFEVGGPAPAAAAAAAAVPYLGVNMAPLGSLHCQSYYQSL------SAAAA------- 329
Query: 213 GALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAK 272
A QG+ G P L PA P A A A+A S +S+ +LRL+AK
Sbjct: 330 -AHQGVWGSP--LLPA---------PPAGLAPASATLNSK--------TTSIENLRLRAK 369
Query: 273 QHAS 276
QHA+
Sbjct: 370 QHAA 373
>gi|27436936 diencephalon/mesencephalon homeobox 1 isoform a [Homo
sapiens]
Length = 377
Score = 97.8 bits (242), Expect = 1e-20
Identities = 84/246 (34%), Positives = 115/246 (46%), Gaps = 27/246 (10%)
Query: 56 GSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 115
GS +KQRR RT FT+QQL+ LE TFQ+ YPD+ RE +A+ TNL EARV+VWFKNRRA
Sbjct: 60 GSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRA 119
Query: 116 KWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKAL--APPLAAKTFPFA 173
K+RK++RS Q E + A E P P L + P A +
Sbjct: 120 KFRKKQRSLQKEQLQKQKEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELHLSLS 179
Query: 174 FNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLG---GGPPGLAPAAV 230
S + QP A + P A +PG +GLG G P +P ++
Sbjct: 180 EQSASESAPEDQP-DREEDPRAGAEDPKAEKSPG-----ADSKGLGCKRGSPKADSPGSL 233
Query: 231 SSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYPAVH------- 283
+ V+ P + + +SSP SL L+ + +QH + + VH
Sbjct: 234 TITPVA-PGGGLLGPSHSYSSSPL--------SLFRLQEQFRQHMAATNNLVHYSSFEVG 284
Query: 284 GPPPAA 289
GP PAA
Sbjct: 285 GPAPAA 290
Score = 32.7 bits (73), Expect = 0.40
Identities = 40/124 (32%), Positives = 52/124 (41%), Gaps = 33/124 (26%)
Query: 153 YGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGP 212
Y ++ AP AA + VN+ PL S S S+ SAAAA
Sbjct: 278 YSSFEVGGPAPAAAAAAAAVPYLGVNMAPLGSLHCQSYYQSL------SAAAA------- 324
Query: 213 GALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAK 272
A QG+ G P L PA P A A A+A S +S+ +LRL+AK
Sbjct: 325 -AHQGVWGSP--LLPA---------PPAGLAPASATLNSK--------TTSIENLRLRAK 364
Query: 273 QHAS 276
QHA+
Sbjct: 365 QHAA 368
>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
Length = 292
Score = 95.1 bits (235), Expect = 7e-20
Identities = 95/307 (30%), Positives = 127/307 (41%), Gaps = 90/307 (29%)
Query: 1 MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEK----ASASLPGG----- 51
+E GL E + SL D P H K +D EK +A + G
Sbjct: 39 LESGLARSRELGTSDSSLQDITEGGGHCPVHLFKDHVDNDKEKLKEFGTARVAEGIYECK 98
Query: 52 --------SPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTE 103
EDG K KQRR RT+FT +QL ELE F YPD REE++ L+E
Sbjct: 99 EKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSE 158
Query: 104 ARVRVWFKNRRAKWRKRER----------SQQAELCKGSFAAPLGGLVPPYEEV-----Y 148
ARV+VWF+NRRAK RK+E + + C+ + +G L P+++V
Sbjct: 159 ARVQVWFQNRRAKCRKQENQMHKGVILGTANHLDACRVAPYVNMGALRMPFQQVQAQLQL 218
Query: 149 PGYSYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGT 208
G ++ + L P LAA A +F PP
Sbjct: 219 EGVAHAH---PHLHPHLAAH--------------APYLMFPPP----------------- 244
Query: 209 VPGPGALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLR 268
P GL A+++ ASAAA AAAA S + NSS+A LR
Sbjct: 245 -------------PFGLPIASLAES------ASAAAVVAAAAKS-----NSKNSSIADLR 280
Query: 269 LKAKQHA 275
LKA++HA
Sbjct: 281 LKARKHA 287
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 93.6 bits (231), Expect = 2e-19
Identities = 82/265 (30%), Positives = 112/265 (42%), Gaps = 52/265 (19%)
Query: 51 GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWF 110
G P+ S K+RR RT+FT QL+ELE F + YPD+ RE +A+ +L E+RV+VWF
Sbjct: 94 GDPDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWF 153
Query: 111 KNRRAKWRKRERSQQA----------ELCKGSFAAP------------------------ 136
+NRRAKWRK+E +++ C G P
Sbjct: 154 QNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIARKELEKMEKKKRKHEKKLLK 213
Query: 137 --------LGGL----VPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVNVGPLAS 184
GGL P + G PP+ PP AAK P A S G +
Sbjct: 214 SQGRHLHSPGGLSLHSAPSSDSDSGGGGLSPEPPE--PPPPAAKG-PGAHASGAAGTAPA 270
Query: 185 QPVFSP-PSSIAASMVPSAAAAPGTVPGPG--ALQGLGGGPPGLAPAAVSSGAVSCPYAS 241
P P P + + PS + G P PG A + PG A AAV GA P AS
Sbjct: 271 PPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKDAASCGPGAAVAAVERGAAGLPKAS 330
Query: 242 AAAAAAAAASSPYVYRDPCNSSLAS 266
+ + + SP + N++ A+
Sbjct: 331 PFSVESLLSDSPPRRKAASNAAAAA 355
>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
Length = 190
Score = 93.2 bits (230), Expect = 3e-19
Identities = 78/236 (33%), Positives = 103/236 (43%), Gaps = 65/236 (27%)
Query: 54 EDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 113
++G K KQRR RT+FT +QL ELE F YPD REE++ L+EARV+VWF+NR
Sbjct: 3 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 62
Query: 114 RAKWRKRER----------SQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKA--- 160
RAK RK+E + Q E C+ + +G L P+++V + A
Sbjct: 63 RAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAHHH 122
Query: 161 LAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGG 220
L P LAA F P P
Sbjct: 123 LHPHLAAHAPYMMF-----------------------------------PAP-------- 139
Query: 221 GPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHAS 276
P GL A +++ + S AAAAAA S NSS+A LRLKAK+HA+
Sbjct: 140 -PFGLPLATLAADSASAASVVAAAAAAKTTSK--------NSSIADLRLKAKKHAA 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,653,891
Number of Sequences: 37866
Number of extensions: 805098
Number of successful extensions: 8092
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 577
Number of HSP's that attempted gapping in prelim test: 5158
Number of HSP's gapped (non-prelim): 2549
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.