Guide to the Human Genome
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Search of human proteins with 13376060

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13376060 hypothetical protein LOC79794 [Homo sapiens]
         (205 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13376060 hypothetical protein LOC79794 [Homo sapiens]              439   e-124
gi|20143973 hedgehog-interacting protein [Homo sapiens]                32   0.29 
gi|239756792 PREDICTED: hypothetical protein [Homo sapiens]            30   1.4  
gi|239755070 PREDICTED: similar to proprotein convertase subtili...    30   1.4  
gi|239751312 PREDICTED: hypothetical protein [Homo sapiens]            30   1.4  
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ...    30   1.4  
gi|239745809 PREDICTED: hypothetical protein [Homo sapiens]            30   1.4  
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ...    30   1.4  
gi|14210534 keratin associated protein 4.4 [Homo sapiens]              30   1.9  
gi|16418447 cysteine and tyrosine-rich 1 protein precursor [Homo...    30   1.9  
gi|116268113 transmembrane protein 99 [Homo sapiens]                   29   2.4  
gi|40317626 thrombospondin 1 precursor [Homo sapiens]                  28   4.2  
gi|60279697 keratin associated protein 5-7 [Homo sapiens]              28   4.2  
gi|13994129 keratin associated protein 4-12 [Homo sapiens]             28   4.2  
gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3...    28   5.5  
gi|239758032 PREDICTED: keratin associated protein 4-8 isoform 2...    28   5.5  
gi|239758030 PREDICTED: keratin associated protein 4-8 isoform 1...    28   5.5  
gi|239756798 PREDICTED: similar to keratin associated protein 4-...    28   5.5  
gi|239756796 PREDICTED: similar to keratin associated protein 4-...    28   5.5  
gi|239756794 PREDICTED: similar to keratin associated protein 4-...    28   5.5  
gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens]           28   5.5  
gi|239751306 PREDICTED: keratin associated protein 4-8 [Homo sap...    28   5.5  
gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens]           28   5.5  
gi|239745805 PREDICTED: keratin associated protein 4.8 [Homo sap...    28   5.5  
gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens]           28   5.5  
gi|225690554 keratin associated protein 4.8 [Homo sapiens]             28   5.5  
gi|31791002 keratin associated protein 13-3 [Homo sapiens]             28   5.5  
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]      28   7.1  
gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]        28   7.1  
gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]        28   7.1  

>gi|13376060 hypothetical protein LOC79794 [Homo sapiens]
          Length = 205

 Score =  439 bits (1129), Expect = e-124
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWK 60
           MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWK
Sbjct: 1   MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWK 60

Query: 61  VQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCW 120
           VQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCW
Sbjct: 61  VQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCW 120

Query: 121 PNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSV 180
           PNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSV
Sbjct: 121 PNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSV 180

Query: 181 QHENTYRDPIAKYCYGESPPELFPA 205
           QHENTYRDPIAKYCYGESPPELFPA
Sbjct: 181 QHENTYRDPIAKYCYGESPPELFPA 205


>gi|20143973 hedgehog-interacting protein [Homo sapiens]
          Length = 700

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 74  QCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVS 133
           +CR ++Q    +T E   +C       NG C      T + CC   W    C   +   +
Sbjct: 593 ECRATVQPAQTLTSECSRLCR------NGYCT----PTGKCCCSPGWEGDFCRTAKCEPA 642

Query: 134 C-----CLQPNKQLLLERFL 148
           C     C++PNK L  + +L
Sbjct: 643 CRHGGVCVRPNKCLCKKGYL 662


>gi|239756792 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 103 CCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPN 139
           CC      T  Y    C P+ CCS    CVS C QP+
Sbjct: 152 CCRPTCCQTTCYRTTCCRPSCCCS--PCCVSSCCQPS 186


>gi|239755070 PREDICTED: similar to proprotein convertase
           subtilisin/kexin type 5 [Homo sapiens]
          Length = 853

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 100 VNGCCNVNVPSTKQYCCDGCWPNGC--CSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQN 157
           V+ C     PS +   C+ C    C  CS  + C  C +QP   L L     R       
Sbjct: 205 VSSCPQGTWPSVRSGSCENC-TEACAICSGADLCKKCQMQPGHPLFLHE--GRCYSKCPE 261

Query: 158 LFMAVEDHFELCLAKCRT 175
              A +   E C + CRT
Sbjct: 262 GSYAEDGICERCSSPCRT 279


>gi|239751312 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 103 CCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPN 139
           CC      T  Y    C P+ CCS    CVS C QP+
Sbjct: 152 CCRPTCCQTTCYRTTCCRPSCCCS--PCCVSSCCQPS 186


>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
           sapiens]
          Length = 853

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 100 VNGCCNVNVPSTKQYCCDGCWPNGC--CSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQN 157
           V+ C     PS +   C+ C    C  CS  + C  C +QP   L L     R       
Sbjct: 205 VSSCPQGTWPSVRSGSCENC-TEACAICSGADLCKKCQMQPGHPLFLHE--GRCYSKCPE 261

Query: 158 LFMAVEDHFELCLAKCRT 175
              A +   E C + CRT
Sbjct: 262 GSYAEDGICERCSSPCRT 279


>gi|239745809 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 103 CCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPN 139
           CC      T  Y    C P+ CCS    CVS C QP+
Sbjct: 152 CCRPTCCQTTCYRTTCCRPSCCCS--PCCVSSCCQPS 186


>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
           sapiens]
          Length = 853

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 100 VNGCCNVNVPSTKQYCCDGCWPNGC--CSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQN 157
           V+ C     PS +   C+ C    C  CS  + C  C +QP   L L     R       
Sbjct: 205 VSSCPQGTWPSVRSGSCENC-TEACAICSGADLCKKCQMQPGHPLFLHE--GRCYSKCPE 261

Query: 158 LFMAVEDHFELCLAKCRT 175
              A +   E C + CRT
Sbjct: 262 GSYAEDGICERCSSPCRT 279


>gi|14210534 keratin associated protein 4.4 [Homo sapiens]
          Length = 166

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 93  CERKDLLVNGCCNVNV--PST-KQYCCDG--CWPNGCCSAYEYCVSCCLQP 138
           C R       CC      PS  +  CC    C P  CC +Y  CVS C +P
Sbjct: 85  CCRPQCCQTTCCRTTCCRPSCCRPQCCQSVCCQPTCCCPSY--CVSSCCRP 133



 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 90  GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQP 138
           G VC  +   +  CC    PS   YC   C    CC     CVS C +P
Sbjct: 7   GSVCSDQGCGLENCCR---PS---YCQTTCCRTTCCRP-SCCVSSCCRP 48


>gi|16418447 cysteine and tyrosine-rich 1 protein precursor [Homo
           sapiens]
          Length = 154

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 112 KQYCCDGCWPNGCCSAYEY 130
           K YCCDG  P  CCS Y Y
Sbjct: 36  KSYCCDGTTPY-CCSYYAY 53


>gi|116268113 transmembrane protein 99 [Homo sapiens]
          Length = 258

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 115 CCDGCWPNGCCSAY 128
           CC GC P+ CCS+Y
Sbjct: 8   CCSGCVPSLCCSSY 21


>gi|40317626 thrombospondin 1 precursor [Homo sapiens]
          Length = 1170

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 92  VCERKDLLVNGCCNVNVPSTKQYCCDGCWPN 122
           +C++    +  C N  VP  +  CC  CWP+
Sbjct: 347 ICKKVSCPIMPCSNATVPDGE--CCPRCWPS 375


>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
          Length = 165

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 103 CCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQ 137
           CC+    S+   CC     N CCS    CV  C Q
Sbjct: 131 CCSSGCGSS---CCQSSCCNPCCSQSSCCVPVCCQ 162


>gi|13994129 keratin associated protein 4-12 [Homo sapiens]
          Length = 201

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 93  CERKDLLVNGCCNVNVPSTKQYCCDG-CWPNGCCSAYEYCVSCC 135
           C R    V+ CC       +  CC   C    CC +   C SCC
Sbjct: 115 CCRPSCCVSSCCRPQC--CQSVCCQPTCCRPSCCISSSCCPSCC 156


>gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3
           [Homo sapiens]
          Length = 204

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%)

Query: 93  CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138
           C R    V+ CC       K  CC    C PN C        C     CVS C +P
Sbjct: 83  CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 131


>gi|239758032 PREDICTED: keratin associated protein 4-8 isoform 2
           [Homo sapiens]
          Length = 193

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%)

Query: 93  CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138
           C R    V+ CC       K  CC    C PN C        C     CVS C +P
Sbjct: 72  CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 120


>gi|239758030 PREDICTED: keratin associated protein 4-8 isoform 1
           [Homo sapiens]
          Length = 220

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%)

Query: 99  LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138
           +VN CC               +  CC  C    CC        Y VSCC +P
Sbjct: 1   MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52



 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%)

Query: 93  CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138
           C R    V+ CC       K  CC    C PN C        C     CVS C +P
Sbjct: 99  CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 147


>gi|239756798 PREDICTED: similar to keratin associated protein 4-12
           isoform 3 [Homo sapiens]
          Length = 204

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%)

Query: 93  CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138
           C R    V+ CC       K  CC    C PN C        C     CVS C +P
Sbjct: 83  CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 131


>gi|239756796 PREDICTED: similar to keratin associated protein 4-12
           isoform 2 [Homo sapiens]
          Length = 193

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%)

Query: 93  CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138
           C R    V+ CC       K  CC    C PN C        C     CVS C +P
Sbjct: 72  CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 120


>gi|239756794 PREDICTED: similar to keratin associated protein 4-12
           isoform 1 [Homo sapiens]
          Length = 220

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%)

Query: 99  LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138
           +VN CC               +  CC  C    CC        Y VSCC +P
Sbjct: 1   MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52



 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%)

Query: 93  CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138
           C R    V+ CC       K  CC    C PN C        C     CVS C +P
Sbjct: 99  CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 147


>gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens]
          Length = 583

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 73  NQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNV-----PSTKQYCCDGC 119
           NQC N  + K + T E  Y CE      N C ++          K Y C+ C
Sbjct: 486 NQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYKCEEC 537


>gi|239751306 PREDICTED: keratin associated protein 4-8 [Homo
           sapiens]
          Length = 195

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%)

Query: 99  LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138
           +VN CC               +  CC  C    CC        Y VSCC +P
Sbjct: 1   MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52


>gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens]
          Length = 583

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 73  NQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNV-----PSTKQYCCDGC 119
           NQC N  + K + T E  Y CE      N C ++          K Y C+ C
Sbjct: 486 NQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYKCEEC 537


>gi|239745805 PREDICTED: keratin associated protein 4.8 [Homo
           sapiens]
          Length = 185

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%)

Query: 99  LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138
           +VN CC               +  CC  C    CC        Y VSCC +P
Sbjct: 1   MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52


>gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens]
          Length = 583

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 73  NQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNV-----PSTKQYCCDGC 119
           NQC N  + K + T E  Y CE      N C ++          K Y C+ C
Sbjct: 486 NQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYKCEEC 537


>gi|225690554 keratin associated protein 4.8 [Homo sapiens]
          Length = 185

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%)

Query: 99  LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138
           +VN CC               +  CC  C    CC        Y VSCC +P
Sbjct: 1   MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52


>gi|31791002 keratin associated protein 13-3 [Homo sapiens]
          Length = 172

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 104 CNVNVPSTKQYCCDGCWPNGC---CSAYEYCVSCCLQPN 139
           C  + PS   Y  D C P+ C    S Y  C   C +PN
Sbjct: 26  CGSSYPSNLVYSTDLCSPSTCQLGSSLYRGCQETCWRPN 64


>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
          Length = 825

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 90  GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWP-NGCCSAYEYCVSC 134
           G +C  + +   G C    P  +   C+ C    G C+ ++ CV C
Sbjct: 604 GQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQC 649


>gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens]
          Length = 789

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 90  GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWP-NGCCSAYEYCVSC 134
           G +C  + +   G C    P  +   C+ C    G C+ ++ CV C
Sbjct: 604 GQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQC 649


>gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens]
          Length = 798

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 90  GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWP-NGCCSAYEYCVSC 134
           G +C  + +   G C    P  +   C+ C    G C+ ++ CV C
Sbjct: 604 GQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQC 649


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.137    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,236,801
Number of Sequences: 37866
Number of extensions: 352210
Number of successful extensions: 1300
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 139
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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