BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|13376060 hypothetical protein LOC79794 [Homo sapiens] (205 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|13376060 hypothetical protein LOC79794 [Homo sapiens] 439 e-124 gi|20143973 hedgehog-interacting protein [Homo sapiens] 32 0.29 gi|239756792 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4 gi|239755070 PREDICTED: similar to proprotein convertase subtili... 30 1.4 gi|239751312 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4 gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 30 1.4 gi|239745809 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4 gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 30 1.4 gi|14210534 keratin associated protein 4.4 [Homo sapiens] 30 1.9 gi|16418447 cysteine and tyrosine-rich 1 protein precursor [Homo... 30 1.9 gi|116268113 transmembrane protein 99 [Homo sapiens] 29 2.4 gi|40317626 thrombospondin 1 precursor [Homo sapiens] 28 4.2 gi|60279697 keratin associated protein 5-7 [Homo sapiens] 28 4.2 gi|13994129 keratin associated protein 4-12 [Homo sapiens] 28 4.2 gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3... 28 5.5 gi|239758032 PREDICTED: keratin associated protein 4-8 isoform 2... 28 5.5 gi|239758030 PREDICTED: keratin associated protein 4-8 isoform 1... 28 5.5 gi|239756798 PREDICTED: similar to keratin associated protein 4-... 28 5.5 gi|239756796 PREDICTED: similar to keratin associated protein 4-... 28 5.5 gi|239756794 PREDICTED: similar to keratin associated protein 4-... 28 5.5 gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens] 28 5.5 gi|239751306 PREDICTED: keratin associated protein 4-8 [Homo sap... 28 5.5 gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens] 28 5.5 gi|239745805 PREDICTED: keratin associated protein 4.8 [Homo sap... 28 5.5 gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens] 28 5.5 gi|225690554 keratin associated protein 4.8 [Homo sapiens] 28 5.5 gi|31791002 keratin associated protein 13-3 [Homo sapiens] 28 5.5 gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 28 7.1 gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens] 28 7.1 gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens] 28 7.1 >gi|13376060 hypothetical protein LOC79794 [Homo sapiens] Length = 205 Score = 439 bits (1129), Expect = e-124 Identities = 205/205 (100%), Positives = 205/205 (100%) Query: 1 MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWK 60 MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWK Sbjct: 1 MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWK 60 Query: 61 VQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCW 120 VQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCW Sbjct: 61 VQFNLGNSSRPSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCW 120 Query: 121 PNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSV 180 PNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSV Sbjct: 121 PNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSV 180 Query: 181 QHENTYRDPIAKYCYGESPPELFPA 205 QHENTYRDPIAKYCYGESPPELFPA Sbjct: 181 QHENTYRDPIAKYCYGESPPELFPA 205 >gi|20143973 hedgehog-interacting protein [Homo sapiens] Length = 700 Score = 32.3 bits (72), Expect = 0.29 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 15/80 (18%) Query: 74 QCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVS 133 +CR ++Q +T E +C NG C T + CC W C + + Sbjct: 593 ECRATVQPAQTLTSECSRLCR------NGYCT----PTGKCCCSPGWEGDFCRTAKCEPA 642 Query: 134 C-----CLQPNKQLLLERFL 148 C C++PNK L + +L Sbjct: 643 CRHGGVCVRPNKCLCKKGYL 662 >gi|239756792 PREDICTED: hypothetical protein [Homo sapiens] Length = 188 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 103 CCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPN 139 CC T Y C P+ CCS CVS C QP+ Sbjct: 152 CCRPTCCQTTCYRTTCCRPSCCCS--PCCVSSCCQPS 186 >gi|239755070 PREDICTED: similar to proprotein convertase subtilisin/kexin type 5 [Homo sapiens] Length = 853 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 100 VNGCCNVNVPSTKQYCCDGCWPNGC--CSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQN 157 V+ C PS + C+ C C CS + C C +QP L L R Sbjct: 205 VSSCPQGTWPSVRSGSCENC-TEACAICSGADLCKKCQMQPGHPLFLHE--GRCYSKCPE 261 Query: 158 LFMAVEDHFELCLAKCRT 175 A + E C + CRT Sbjct: 262 GSYAEDGICERCSSPCRT 279 >gi|239751312 PREDICTED: hypothetical protein [Homo sapiens] Length = 188 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 103 CCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPN 139 CC T Y C P+ CCS CVS C QP+ Sbjct: 152 CCRPTCCQTTCYRTTCCRPSCCCS--PCCVSSCCQPS 186 >gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo sapiens] Length = 853 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 100 VNGCCNVNVPSTKQYCCDGCWPNGC--CSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQN 157 V+ C PS + C+ C C CS + C C +QP L L R Sbjct: 205 VSSCPQGTWPSVRSGSCENC-TEACAICSGADLCKKCQMQPGHPLFLHE--GRCYSKCPE 261 Query: 158 LFMAVEDHFELCLAKCRT 175 A + E C + CRT Sbjct: 262 GSYAEDGICERCSSPCRT 279 >gi|239745809 PREDICTED: hypothetical protein [Homo sapiens] Length = 188 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 103 CCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPN 139 CC T Y C P+ CCS CVS C QP+ Sbjct: 152 CCRPTCCQTTCYRTTCCRPSCCCS--PCCVSSCCQPS 186 >gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo sapiens] Length = 853 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 100 VNGCCNVNVPSTKQYCCDGCWPNGC--CSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQN 157 V+ C PS + C+ C C CS + C C +QP L L R Sbjct: 205 VSSCPQGTWPSVRSGSCENC-TEACAICSGADLCKKCQMQPGHPLFLHE--GRCYSKCPE 261 Query: 158 LFMAVEDHFELCLAKCRT 175 A + E C + CRT Sbjct: 262 GSYAEDGICERCSSPCRT 279 >gi|14210534 keratin associated protein 4.4 [Homo sapiens] Length = 166 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 7/51 (13%) Query: 93 CERKDLLVNGCCNVNV--PST-KQYCCDG--CWPNGCCSAYEYCVSCCLQP 138 C R CC PS + CC C P CC +Y CVS C +P Sbjct: 85 CCRPQCCQTTCCRTTCCRPSCCRPQCCQSVCCQPTCCCPSY--CVSSCCRP 133 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 7/49 (14%) Query: 90 GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQP 138 G VC + + CC PS YC C CC CVS C +P Sbjct: 7 GSVCSDQGCGLENCCR---PS---YCQTTCCRTTCCRP-SCCVSSCCRP 48 >gi|16418447 cysteine and tyrosine-rich 1 protein precursor [Homo sapiens] Length = 154 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%) Query: 112 KQYCCDGCWPNGCCSAYEY 130 K YCCDG P CCS Y Y Sbjct: 36 KSYCCDGTTPY-CCSYYAY 53 >gi|116268113 transmembrane protein 99 [Homo sapiens] Length = 258 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 115 CCDGCWPNGCCSAY 128 CC GC P+ CCS+Y Sbjct: 8 CCSGCVPSLCCSSY 21 >gi|40317626 thrombospondin 1 precursor [Homo sapiens] Length = 1170 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Query: 92 VCERKDLLVNGCCNVNVPSTKQYCCDGCWPN 122 +C++ + C N VP + CC CWP+ Sbjct: 347 ICKKVSCPIMPCSNATVPDGE--CCPRCWPS 375 >gi|60279697 keratin associated protein 5-7 [Homo sapiens] Length = 165 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%) Query: 103 CCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQ 137 CC+ S+ CC N CCS CV C Q Sbjct: 131 CCSSGCGSS---CCQSSCCNPCCSQSSCCVPVCCQ 162 >gi|13994129 keratin associated protein 4-12 [Homo sapiens] Length = 201 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 3/44 (6%) Query: 93 CERKDLLVNGCCNVNVPSTKQYCCDG-CWPNGCCSAYEYCVSCC 135 C R V+ CC + CC C CC + C SCC Sbjct: 115 CCRPSCCVSSCCRPQC--CQSVCCQPTCCRPSCCISSSCCPSCC 156 >gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3 [Homo sapiens] Length = 204 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%) Query: 93 CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138 C R V+ CC K CC C PN C C CVS C +P Sbjct: 83 CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 131 >gi|239758032 PREDICTED: keratin associated protein 4-8 isoform 2 [Homo sapiens] Length = 193 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%) Query: 93 CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138 C R V+ CC K CC C PN C C CVS C +P Sbjct: 72 CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 120 >gi|239758030 PREDICTED: keratin associated protein 4-8 isoform 1 [Homo sapiens] Length = 220 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%) Query: 99 LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138 +VN CC + CC C CC Y VSCC +P Sbjct: 1 MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%) Query: 93 CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138 C R V+ CC K CC C PN C C CVS C +P Sbjct: 99 CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 147 >gi|239756798 PREDICTED: similar to keratin associated protein 4-12 isoform 3 [Homo sapiens] Length = 204 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%) Query: 93 CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138 C R V+ CC K CC C PN C C CVS C +P Sbjct: 83 CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 131 >gi|239756796 PREDICTED: similar to keratin associated protein 4-12 isoform 2 [Homo sapiens] Length = 193 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%) Query: 93 CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138 C R V+ CC K CC C PN C C CVS C +P Sbjct: 72 CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 120 >gi|239756794 PREDICTED: similar to keratin associated protein 4-12 isoform 1 [Homo sapiens] Length = 220 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%) Query: 99 LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138 +VN CC + CC C CC Y VSCC +P Sbjct: 1 MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52 Score = 28.1 bits (61), Expect = 5.5 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 17/56 (30%) Query: 93 CERKDLLVNGCCNVNVPSTKQYCCDG--CWPNGC--------CSAYEYCVSCCLQP 138 C R V+ CC K CC C PN C C CVS C +P Sbjct: 99 CCRPSCCVSSCC-------KPQCCQSVCCQPNCCRPSCSISSCCRPSCCVSSCCKP 147 >gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens] Length = 583 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 73 NQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNV-----PSTKQYCCDGC 119 NQC N + K + T E Y CE N C ++ K Y C+ C Sbjct: 486 NQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYKCEEC 537 >gi|239751306 PREDICTED: keratin associated protein 4-8 [Homo sapiens] Length = 195 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%) Query: 99 LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138 +VN CC + CC C CC Y VSCC +P Sbjct: 1 MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52 >gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens] Length = 583 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 73 NQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNV-----PSTKQYCCDGC 119 NQC N + K + T E Y CE N C ++ K Y C+ C Sbjct: 486 NQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYKCEEC 537 >gi|239745805 PREDICTED: keratin associated protein 4.8 [Homo sapiens] Length = 185 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%) Query: 99 LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138 +VN CC + CC C CC Y VSCC +P Sbjct: 1 MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52 >gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens] Length = 583 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 73 NQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNV-----PSTKQYCCDGC 119 NQC N + K + T E Y CE N C ++ K Y C+ C Sbjct: 486 NQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYKCEEC 537 >gi|225690554 keratin associated protein 4.8 [Homo sapiens] Length = 185 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 12/52 (23%) Query: 99 LVNGCCNVNVPST--------KQYCCDGCWPNGCCSAY----EYCVSCCLQP 138 +VN CC + CC C CC Y VSCC +P Sbjct: 1 MVNSCCGSVCSDQGCGQDLCQETCCCPSCCQTTCCRTTCYRPSYSVSCCCRP 52 >gi|31791002 keratin associated protein 13-3 [Homo sapiens] Length = 172 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 104 CNVNVPSTKQYCCDGCWPNGC---CSAYEYCVSCCLQPN 139 C + PS Y D C P+ C S Y C C +PN Sbjct: 26 CGSSYPSNLVYSTDLCSPSTCQLGSSLYRGCQETCWRPN 64 >gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] Length = 825 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 90 GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWP-NGCCSAYEYCVSC 134 G +C + + G C P + C+ C G C+ ++ CV C Sbjct: 604 GQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQC 649 >gi|19743815 integrin beta 1 isoform 1B precursor [Homo sapiens] Length = 789 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 90 GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWP-NGCCSAYEYCVSC 134 G +C + + G C P + C+ C G C+ ++ CV C Sbjct: 604 GQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQC 649 >gi|19743813 integrin beta 1 isoform 1A precursor [Homo sapiens] Length = 798 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Query: 90 GYVCERKDLLVNGCCNVNVPSTKQYCCDGCWP-NGCCSAYEYCVSC 134 G +C + + G C P + C+ C G C+ ++ CV C Sbjct: 604 GQICNGRGICECGVCKCTDPKFQGQTCEMCQTCLGVCAEHKECVQC 649 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.325 0.137 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,236,801 Number of Sequences: 37866 Number of extensions: 352210 Number of successful extensions: 1300 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 37 Number of HSP's that attempted gapping in prelim test: 1217 Number of HSP's gapped (non-prelim): 139 length of query: 205 length of database: 18,247,518 effective HSP length: 97 effective length of query: 108 effective length of database: 14,574,516 effective search space: 1574047728 effective search space used: 1574047728 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.