Guide to the Human Genome
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Name: CYYR1 Sequence: fasta or formatted (154aa) NCBI GI: 16418447
Description:

cysteine and tyrosine-rich 1 protein precursor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         12           1
 C cysteine            7.1         11           2
 D aspartate           4.5          7           2
 E glutamate           1.3          2           1
 F phenylalanine       1.9          3           1
 G glycine             9.1         14           1
 H histidine           2.6          4           1
 I isoleucine          7.8         12           1
 K lysine              3.2          5           1
 L leucine             6.5         10           2
 M methionine          3.2          5           1
 N asparagine          2.6          4           1
 P proline            13.0         20           4
 Q glutamine           1.9          3           1
 R arginine            4.5          7           1
 S serine              4.5          7           2
 T threonine           5.2          8           2
 V valine              5.8          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            7.1         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cysteine and tyrosine-rich 1 protein precursor [Homo... 
SHISA5                0.045   scotin 
SMR3A                 0.038   submaxillary gland androgen regulated protein 3 homo...
ZFR2                  0.038   zinc finger RNA binding protein 2 isoform 1 
PCLO                  0.038   piccolo isoform 2 
PCLO                  0.038   piccolo isoform 1 
WNK2                  0.035   WNK lysine deficient protein kinase 2 
TFAP2A                0.035   transcription factor AP-2 alpha isoform a 
SMR3B                 0.035   submaxillary gland androgen regulated protein 3 homol...
DIAPH1                0.032   diaphanous 1 isoform 2 
DIAPH1                0.032   diaphanous 1 isoform 1 
LTBP4                 0.032   latent transforming growth factor beta binding prot...
LTBP4                 0.032   latent transforming growth factor beta binding prot...
LTBP4                 0.032   latent transforming growth factor beta binding prot...
TFAP2A                0.032   transcription factor AP-2 alpha isoform b 
WIPF2                 0.032   WIRE protein 
PRB2                  0.032   proline-rich protein BstNI subfamily 2 
CEP110                0.032   centrosomal protein 110kDa 
SHISA4                0.029   shisa homolog 4 
TACC2                 0.029   transforming, acidic coiled-coil containing protein...
PRB3                  0.029   proline-rich protein BstNI subfamily 3 precursor [H...
FUBP1                 0.029   far upstream element-binding protein 
SFPQ                  0.029   splicing factor proline/glutamine rich (polypyrimidin...
PRB4                  0.029   proline-rich protein BstNI subfamily 4 precursor [Ho...
TFAP2A                0.026   transcription factor AP-2 alpha isoform c 
CCDC6                 0.026   coiled-coil domain containing 6 
FOXG1                 0.026   forkhead box G1 
PRB1                  0.026   proline-rich protein BstNI subfamily 1 isoform 1 pre...
CEACAM4               0.026   carcinoembryonic antigen-related cell adhesion molec...
WBP11                 0.026   WW domain binding protein 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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