Search of human proteins with 13375721

Search of human proteins with 13375721

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13375721 hypothetical protein LOC79607 [Homo sapiens]
         (351 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13375721 hypothetical protein LOC79607 [Homo sapiens]              701   0.0  
gi|157388971 hypothetical protein LOC55007 [Homo sapiens]             306   2e-83
gi|157388973 hypothetical protein LOC55007 [Homo sapiens]             306   2e-83
gi|219283152 apoptosis inhibitor 5 isoform a [Homo sapiens]            33   0.29 
gi|5729730 apoptosis inhibitor 5 isoform b [Homo sapiens]              33   0.29 
gi|221316747 exophilin 5 isoform a [Homo sapiens]                      33   0.50 
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s...    32   0.65 
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s...    32   0.65 
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]     32   1.1  
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s...    31   1.9  
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]      30   2.5  
gi|39930479 DIX domain containing 1 isoform b [Homo sapiens]           30   2.5  
gi|83816971 DIX domain containing 1 isoform a [Homo sapiens]           30   2.5  
gi|241982802 HMG box domain containing 3 [Homo sapiens]                30   3.2  
gi|6912734 transportin 3 [Homo sapiens]                                30   4.2  
gi|7657116 glyceraldehyde-3-phosphate dehydrogenase, spermatogen...    30   4.2  
gi|23308751 3-hydroxyisobutyrate dehydrogenase [Homo sapiens]          30   4.2  
gi|157276588 basonuclin 1 [Homo sapiens]                               29   5.5  
gi|118572606 hemicentin 1 [Homo sapiens]                               29   7.2  
gi|109255239 centrosomal protein 63 isoform b [Homo sapiens]           29   7.2  
gi|22095367 centrosomal protein 63 isoform a [Homo sapiens]            29   7.2  
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ...    28   9.4  
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ...    28   9.4  

>gi|13375721 hypothetical protein LOC79607 [Homo sapiens]
          Length = 351

 Score =  701 bits (1809), Expect = 0.0
 Identities = 351/351 (100%), Positives = 351/351 (100%)

Query: 1   MASTGSQASDIDEIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 60
           MASTGSQASDIDEIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP
Sbjct: 1   MASTGSQASDIDEIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVP 60

Query: 61  ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 120
           ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS
Sbjct: 61  ALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRS 120

Query: 121 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 180
           TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE
Sbjct: 121 TFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLE 180

Query: 181 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 240
           SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE
Sbjct: 181 SLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYE 240

Query: 241 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 300
           NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV
Sbjct: 241 NKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKV 300

Query: 301 ISYGDDYADLPEYFKRLTCEISTRGTSAGMVREGQLNGSSAAHSEIRGCST 351
           ISYGDDYADLPEYFKRLTCEISTRGTSAGMVREGQLNGSSAAHSEIRGCST
Sbjct: 301 ISYGDDYADLPEYFKRLTCEISTRGTSAGMVREGQLNGSSAAHSEIRGCST 351


>gi|157388971 hypothetical protein LOC55007 [Homo sapiens]
          Length = 357

 Score =  306 bits (783), Expect = 2e-83
 Identities = 155/296 (52%), Positives = 215/296 (72%), Gaps = 2/296 (0%)

Query: 26  KKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQALLDAAIDFDLLEDE 85
           +K RK L SL  K+P+EL+LVIGTG+SAAVAP +PAL SW+  I+A+++AA   ++L   
Sbjct: 13  QKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPG 72

Query: 86  ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQL 145
           +  +F++ + +D++L+ VAHDLI+K+SPRT + + +FF+DCL EVFDDLE  +      +
Sbjct: 73  DVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSP--VV 130

Query: 146 LQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHI 205
           LQS+L LM+ GA+VLTTN+DNLLE +   Q K +ESLDL D+ KVLEWA+   K  VLHI
Sbjct: 131 LQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWARGHMKYGVLHI 190

Query: 206 HGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEA 265
           HG+YT+P G+VL P+GY++V ++ EVM  +Q LY  KSFLF+GCG T+ D  FQALFL +
Sbjct: 191 HGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYS 250

Query: 266 VKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGDDYADLPEYFKRLTCEI 321
           V +K DLEH+MLV + + D F K + +ML  GIKV+SYGD +   P Y + L  +I
Sbjct: 251 VPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQDLATQI 306


>gi|157388973 hypothetical protein LOC55007 [Homo sapiens]
          Length = 357

 Score =  306 bits (783), Expect = 2e-83
 Identities = 155/296 (52%), Positives = 215/296 (72%), Gaps = 2/296 (0%)

Query: 26  KKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQALLDAAIDFDLLEDE 85
           +K RK L SL  K+P+EL+LVIGTG+SAAVAP +PAL SW+  I+A+++AA   ++L   
Sbjct: 13  QKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPG 72

Query: 86  ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQL 145
           +  +F++ + +D++L+ VAHDLI+K+SPRT + + +FF+DCL EVFDDLE  +      +
Sbjct: 73  DVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSP--VV 130

Query: 146 LQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHI 205
           LQS+L LM+ GA+VLTTN+DNLLE +   Q K +ESLDL D+ KVLEWA+   K  VLHI
Sbjct: 131 LQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWARGHMKYGVLHI 190

Query: 206 HGVYTNPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEA 265
           HG+YT+P G+VL P+GY++V ++ EVM  +Q LY  KSFLF+GCG T+ D  FQALFL +
Sbjct: 191 HGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYS 250

Query: 266 VKHKSDLEHFMLVRRGDVDEFKKLRENMLDKGIKVISYGDDYADLPEYFKRLTCEI 321
           V +K DLEH+MLV + + D F K + +ML  GIKV+SYGD +   P Y + L  +I
Sbjct: 251 VPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQDLATQI 306


>gi|219283152 apoptosis inhibitor 5 isoform a [Homo sapiens]
          Length = 524

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 72  LLDAAID--FDLLEDEESKKFQKCLHE------DKNLVHVAHDLIQKLSPRTSNVRSTFF 123
           L D+AI+   DL EDE+    ++ + E       +NL  VA D++ +L     +      
Sbjct: 59  LADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVA-DILTQLLQTDDSAEFNLV 117

Query: 124 KDCLYEVFD-DLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESL 182
            + L  +F  D +  +     Q+LQ    + E     L+T    L +       K++E L
Sbjct: 118 NNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT---KEVEEL 174

Query: 183 DLTDEKKVLE 192
            LT+ KKVLE
Sbjct: 175 ILTESKKVLE 184


>gi|5729730 apoptosis inhibitor 5 isoform b [Homo sapiens]
          Length = 504

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 72  LLDAAID--FDLLEDEESKKFQKCLHE------DKNLVHVAHDLIQKLSPRTSNVRSTFF 123
           L D+AI+   DL EDE+    ++ + E       +NL  VA D++ +L     +      
Sbjct: 59  LADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVA-DILTQLLQTDDSAEFNLV 117

Query: 124 KDCLYEVFD-DLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESL 182
            + L  +F  D +  +     Q+LQ    + E     L+T    L +       K++E L
Sbjct: 118 NNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT---KEVEEL 174

Query: 183 DLTDEKKVLE 192
            LT+ KKVLE
Sbjct: 175 ILTESKKVLE 184


>gi|221316747 exophilin 5 isoform a [Homo sapiens]
          Length = 1989

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 76  AIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLE 135
           A DF  L DEE++K  + L  ++ L     D I KL     ++R  + +    E F++++
Sbjct: 7   AFDFSFLNDEEARKILQVLERNEELQRAEKDRISKLQKTKRDIR--WLQGVTGEWFEEIQ 64

Query: 136 SK 137
            K
Sbjct: 65  RK 66


>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
           sapiens]
          Length = 326

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 20/146 (13%)

Query: 64  SWKGLIQ-----ALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNV 118
           SWK  IQ      L D     D+L+ EES + Q    E+++++    +   ++  +T ++
Sbjct: 169 SWKTQIQYDKTNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSL 228

Query: 119 RSTFFKDCLYEVFDDLESKMEDSGKQLLQ---SVLHLMENGALVLTTNF-DNLLELYAAD 174
           R         E+  DLE +++ S  +LLQ    V+   EN  L     F  N   ++ A 
Sbjct: 229 R---------ELISDLEHRLQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAP 279

Query: 175 QGKQLESL--DLTDEKKVLEWAQEKR 198
             K +  +  +LTD ++   W+   R
Sbjct: 280 DLKGMLEVFRELTDVRRYWGWSAMAR 305


>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
           sapiens]
          Length = 347

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 22/145 (15%)

Query: 64  SWKGLIQ-----ALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNV 118
           SWK  IQ      L D     D+L+ EES + Q    E+++++    +   ++  +T ++
Sbjct: 169 SWKTQIQYDKTNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSL 228

Query: 119 RSTFFKDCLYEVFDDLESKMEDSGKQLLQ---SVLHLMENGALVLTTNF-DNLLELYAAD 174
           R         E+  DLE +++ S  +LLQ    V+   EN  L     F  N   ++ A 
Sbjct: 229 R---------ELISDLEHRLQGSVMELLQGVDGVIKRTENVTLKKPETFPKNQRRVFRAP 279

Query: 175 QGKQLESL--DLTDEKKVLEWAQEK 197
             K +  +  +LTD ++   W +EK
Sbjct: 280 DLKGMLEVFRELTDVRRY--WGKEK 302


>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
          Length = 2230

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 12/139 (8%)

Query: 68  LIQALLDAAIDFDLLEDE----ESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFF 123
           L Q LLD   +  LL  +    E++K   C   D + + V  DL+Q+L  + S +     
Sbjct: 824 LQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQV-QDLMQQLEKQNSEMEQKV- 881

Query: 124 KDCLYEVFDDLESKMEDSGKQLLQS--VLHLMENGALVLTTNFDNLLELYAADQGKQLES 181
              L +V+   ESK+ED  K+  Q+  +L   EN  L +       +E+       + +S
Sbjct: 882 -KSLTQVY---ESKLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDS 937

Query: 182 LDLTDEKKVLEWAQEKRKL 200
           + + +E+   ++  +++K+
Sbjct: 938 IHILNEEYETKFKNQEKKM 956


>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
           sapiens]
          Length = 493

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 64  SWKGLIQ-----ALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNV 118
           SWK  IQ      L D     D+L+ EES + Q    E+++++    +   ++  +T ++
Sbjct: 169 SWKTQIQYDKTNVLADFEQLRDILDWEESNELQNLEKEEEDILKSLTNSETEMVQQTQSL 228

Query: 119 RSTFFKDCLYEVFDDLESKMEDSGKQLLQSV 149
           R         E+  DLE +++ S  +LLQ V
Sbjct: 229 R---------ELISDLEHRLQGSVMELLQGV 250


>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
          Length = 1844

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 85  EESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESK--MEDSG 142
           EE ++F K   +       A D ++    ++S+ +    + CLYEV  D  SK  ME+SG
Sbjct: 398 EERQQFMKAFRQP------ASDALKNGVKKSSDKQKDLNEKCLYEVGRDDNSKKIMENSG 451

Query: 143 KQLLQSVLHLMENGALVLTTNFDNLLE 169
            Q++       +NG L L T+  + L+
Sbjct: 452 IQMVS------KNGNLQLHTDKGSFLK 472


>gi|39930479 DIX domain containing 1 isoform b [Homo sapiens]
          Length = 472

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 19/143 (13%)

Query: 72  LLDAAIDFDLLEDEESKK-FQKCLHEDKNLVHVAHDLIQKLSPRTSNV--------RSTF 122
           ++ + +D  + E+++ KK   KC  E +NL  +   L Q+L+ + ++V        R+  
Sbjct: 127 IIQSRLDQSMEENQDLKKELLKCKQEARNLQGIKDALQQRLTQQDTSVLQLKQELLRANM 186

Query: 123 FKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESL 182
            KD L+    DL+ K+++  + L +    L +          D LL+ + A   + L  L
Sbjct: 187 DKDELHNQNVDLQRKLDERNRLLGEYKKELGQK---------DRLLQQHQAKLEEALRKL 237

Query: 183 -DLTDEKKVLEWAQEKRKLSVLH 204
            D++  +  LE   E + + + H
Sbjct: 238 SDVSYHQVDLERELEHKDVLLAH 260


>gi|83816971 DIX domain containing 1 isoform a [Homo sapiens]
          Length = 683

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 19/143 (13%)

Query: 72  LLDAAIDFDLLEDEESKK-FQKCLHEDKNLVHVAHDLIQKLSPRTSNV--------RSTF 122
           ++ + +D  + E+++ KK   KC  E +NL  +   L Q+L+ + ++V        R+  
Sbjct: 338 IIQSRLDQSMEENQDLKKELLKCKQEARNLQGIKDALQQRLTQQDTSVLQLKQELLRANM 397

Query: 123 FKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESL 182
            KD L+    DL+ K+++  + L +    L +          D LL+ + A   + L  L
Sbjct: 398 DKDELHNQNVDLQRKLDERNRLLGEYKKELGQK---------DRLLQQHQAKLEEALRKL 448

Query: 183 -DLTDEKKVLEWAQEKRKLSVLH 204
            D++  +  LE   E + + + H
Sbjct: 449 SDVSYHQVDLERELEHKDVLLAH 471


>gi|241982802 HMG box domain containing 3 [Homo sapiens]
          Length = 1292

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 10 DIDEIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPAL 62
          +I+E + + + G PP KK +  +   KTKKPR   L+    I   V  ++P L
Sbjct: 16 EIEEAYCYTSPG-PPKKKKKYKIHGEKTKKPRSAYLLYYYDIYLKVQQELPHL 67


>gi|6912734 transportin 3 [Homo sapiens]
          Length = 923

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 22  EPPTKKPRKLLPSLKT--KKPRELVLVIGTGISAAVAPQVPALKSWKGLIQALLD 74
           E PT     L  SL T  +  ++L  VI T ++ A+A     + SWKG +Q L++
Sbjct: 77  ELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVE 131


>gi|7657116 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
           [Homo sapiens]
          Length = 408

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 294 LDKGIKVISYGDDYADLPEYFKRLTCEISTRGTSAGMV--REGQL 336
           ++KG+KV++  D + D PEY   +    ST G   G V  R GQL
Sbjct: 95  MEKGVKVVAVNDPFID-PEYMVYMFKYDSTHGRYKGSVEFRNGQL 138


>gi|23308751 3-hydroxyisobutyrate dehydrogenase [Homo sapiens]
          Length = 336

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 112 SPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVLT--TNFDNLLE 169
           +P   N+    +   +Y+VF D   + +D+G+Q++ S   + E    ++T      N +E
Sbjct: 52  NPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIE 111

Query: 170 LYAADQG 176
            Y+   G
Sbjct: 112 AYSGANG 118


>gi|157276588 basonuclin 1 [Homo sapiens]
          Length = 994

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 31  LLPSLKTKKP-----RELVLVIGTGISAAVAPQVPALKSWKGLIQALLDAAIDFDLLEDE 85
           L P+LKT +P     R          +  + P +P L S   + + L+   + FD L  +
Sbjct: 478 LFPNLKTVQPVLPFYRSPATPAEVANTPGILPSLPLLSS--SIPEQLISNEMPFDALPKK 535

Query: 86  ESKKFQKCLHEDKNLVHVAHDLIQKLS 112
           +S+K    +  +K  V +A++    LS
Sbjct: 536 KSRKSSMPIKIEKEAVEIANEKRHNLS 562


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 130 VFDDLESKMEDSGKQLLQSVLHLMENGALVLTTNFDN-------LLELYAADQGKQLESL 182
           VF D  SK      ++LQ +         VLT + D+       + E  A+    Q+  L
Sbjct: 141 VFTDARSKDYRLTHEVLQLIQQKQSQVVFVLTGDCDDRTHIGYKVYEEIASTSSGQVFHL 200

Query: 183 DLTDEKKVLEWAQEKRKLSVLHI 205
           D     +VL+W +E  + S +H+
Sbjct: 201 DKKQVNEVLKWVEEAVQASKVHL 223


>gi|109255239 centrosomal protein 63 isoform b [Homo sapiens]
          Length = 541

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 85  EESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDL-ESKMEDSGK 143
           EE ++ +  L   +NL+H A    +KL  +     +    + +    + L E K    G+
Sbjct: 267 EEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKYTSQGQ 326

Query: 144 QLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVL 203
             L SVL       L  T   ++LL+         LES+  T ++   E  ++  +L  +
Sbjct: 327 GDLDSVL-----SQLNFTHTSEDLLQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRM 381

Query: 204 HIH 206
             H
Sbjct: 382 EAH 384


>gi|22095367 centrosomal protein 63 isoform a [Homo sapiens]
          Length = 703

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 85  EESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDL-ESKMEDSGK 143
           EE ++ +  L   +NL+H A    +KL  +     +    + +    + L E K    G+
Sbjct: 267 EEKRELKAALQSQENLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKYTSQGQ 326

Query: 144 QLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVL 203
             L SVL       L  T   ++LL+         LES+  T ++   E  ++  +L  +
Sbjct: 327 GDLDSVL-----SQLNFTHTSEDLLQAEVTCLEGSLESVSATCKQLSQELMEKYEELKRM 381

Query: 204 HIH 206
             H
Sbjct: 382 EAH 384


>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
           [Homo sapiens]
          Length = 1288

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 85  EESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNV 118
           E+ K+ QK   E+ N   + HDL QK+    S++
Sbjct: 557 EKEKELQKLTQEETNFKSLVHDLFQKVEEAKSSL 590


>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
           [Homo sapiens]
          Length = 1288

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 85  EESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNV 118
           E+ K+ QK   E+ N   + HDL QK+    S++
Sbjct: 557 EKEKELQKLTQEETNFKSLVHDLFQKVEEAKSSL 590


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,016,710
Number of Sequences: 37866
Number of extensions: 564476
Number of successful extensions: 1729
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1721
Number of HSP's gapped (non-prelim): 23
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.