Guide to the Human Genome
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Name: FAM118A Sequence: fasta or formatted (357aa) NCBI GI: 157388971
Description:

hypothetical protein LOC55007

Not currently referenced in the text

Other entries for this name:
alt mRNA {357aa} hypothetical protein LOC55007
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         21           2
 C cysteine            2.5          9           1
 D aspartate           8.7         31           2
 E glutamate           6.2         22           2
 F phenylalanine       3.9         14           2
 G glycine             5.9         21           2
 H histidine           3.1         11           1
 I isoleucine          3.6         13           1
 K lysine              7.0         25           2
 L leucine            11.2         40           3
 M methionine          2.8         10           1
 N asparagine          2.5          9           1
 P proline             3.6         13           1
 Q glutamine           5.3         19           2
 R arginine            5.3         19           2
 S serine              6.2         22           1
 T threonine           4.8         17           2
 V valine              8.4         30           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55007 
FAM118A               1.000   hypothetical protein LOC55007 
FAM118B               0.404   hypothetical protein LOC79607 
IPO11                 0.014   Ran binding protein 11 isoform 1 
IPO11                 0.014   Ran binding protein 11 isoform 2 
SQRDL                 0.007   sulfide dehydrogenase like 
JUB                   0.006   ajuba isoform 1 
ZNFX1                 0.006   zinc finger, NFX1-type containing 1 
HAUS1                 0.004   coiled-coil domain containing 5 
FGG                   0.004   fibrinogen, gamma chain isoform gamma-B precursor [H...
FGG                   0.004   fibrinogen, gamma chain isoform gamma-A precursor [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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